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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0196500 |
| Transcript ID | LotjaGi4g1v0196500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome b559 subunit alpha; TAIR: AT2G24310.1 TPRXL; Swiss-Prot: sp|Q9KBE4|HUTI_BACHD Imidazolonepropionase; TrEMBL-Plants: tr|A0A072VHK8|A0A072VHK8_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0196500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:45178269..45179879) extracted from Lotus japonicus Gifu genome v1.2.
ATCAAAAAAAAAACCGTAAAAAAACTACTCCAAAAATATAATTCAGGTACTATTTTTTTTTCTTGAAATACTTATTGAAA ACTTTGTCGCCAAAAAGACTATAAAGTCCCTATTACATTTTGCGCGGGAAGAGAAAGTTATGTAACTGTTGGCGCTTCGA TTTAAAGCGAAGATAAAGAGAGAGAGTGGAAACATTGAAAAAACAACACACAGTCACAGACTCACTTTTCTCACACACTC AACCTCGCCGCTCGCTGCCATGGAATCGCCGCCATACGACACCGGCCTTCCGGTTGCCTCCACCGCTATCGTAATGGTGA CGCCGCCGGATACCCAGGATGACACTCAAGACGGCGCTCAAGACGTTTTCCACACTCCGCGTGAGGACTCCTCGCTCACC TCGTCAGACAACCAGCAACCGACGGTGACCGTCGACTTTGGCGTCGTCCACTGCTCGGTCAGCAAGGTCTTCGATTCTGG AACCCAGGGGTTCGTTGATTTAGGTGGGTTTCCAGATGAGTCAGAGTTCATGGATTTGGGAAAAGACTCTGGATTAGGGT TTCCCGAAGCCGCCGACGAGATCTCACCTGGATCCGGAGGAGATGGTATGGGCGAGATTCCTGGAATTCAGGCTGATCAA TTTGGGGTTTCTGATGCAGATGCAGAAAATCAGGTTTCTGATGATGCTGATGCAAAAAATCAGGTTTCTGGTGATGCTGA TGCTGAAAATCCCAGCAATCTAGATGGTGAGCAAATGCCTGAGGATGAGATTTGCATAGAGGTTTCATACGACGAAGATT TGGGCTCTGGGAAGAAATCTGAAACCCTAGCAGCTGCTGATTTGGGAACTAAAGCATGTGATGACATTGACAGGGATGGA TACTTGACTGAGAGTGAAACCTTAATTTATGAGGTCACTGAAGATTCTGGAAAGCGAGGCGGGAGCGATAAGGCCACTGA AGATTCTGGAGAGCGAGGCGGGAGCGATAAAGAATTGGTGCAGAAGCGTGCTGCAGAAGATGAATTGAAATCTGGTCCGG AGAAAAGGAAGTTTTCTGGTTATGATGTGTTGAAAGTCATGGCGGAGAACAATGCTCATAGAAGTAAAGATGAGCCTACT CTGTCTCTGTTGGAAACGGCGAGGCTTATAGGTATAACATTTCCTCGGCCGAGGTGGTGGCCGAAGAATGATGATAGGTT TGCTAGTGGGTTGTTTCTTTTTGAGGAAACTTCTTAAGGTTTGATGCTTTGTTTTGTTCTGAAAGCTCAGACAAGAGGAA ATGAAGCTGTCTCTCATGGTTATTTTGTAATGTATGAGGATTCCTAATTCTCTTAATAGTTAACATCGAATGTTCTAGGT GGCTAGGTGCTATTGTGGACACTAGTAAGTAGTAACTTGCTGTCATTTTGTGAAATTAGAATATGTAAAACGAATATTGC TGGCTTTGTTTATGTACATTGCTTTAGGATGCTTCATCTGAAACTGAAGTTAGTGTCGTCTTCTTTTGGTTAAATATTTG GTTAGGAATTTCTCATAATCATGATGTTGATATTACAAGTGTGTTTTTCAACAAAAAATCAAACATGCACCAAATGTCAA GAGGTTCTAGT
CDS sequence (LotjaGi4g1v0196500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCGCCGCCATACGACACCGGCCTTCCGGTTGCCTCCACCGCTATCGTAATGGTGACGCCGCCGGATACCCAGGA TGACACTCAAGACGGCGCTCAAGACGTTTTCCACACTCCGCGTGAGGACTCCTCGCTCACCTCGTCAGACAACCAGCAAC CGACGGTGACCGTCGACTTTGGCGTCGTCCACTGCTCGGTCAGCAAGGTCTTCGATTCTGGAACCCAGGGGTTCGTTGAT TTAGGTGGGTTTCCAGATGAGTCAGAGTTCATGGATTTGGGAAAAGACTCTGGATTAGGGTTTCCCGAAGCCGCCGACGA GATCTCACCTGGATCCGGAGGAGATGGTATGGGCGAGATTCCTGGAATTCAGGCTGATCAATTTGGGGTTTCTGATGCAG ATGCAGAAAATCAGGTTTCTGATGATGCTGATGCAAAAAATCAGGTTTCTGGTGATGCTGATGCTGAAAATCCCAGCAAT CTAGATGGTGAGCAAATGCCTGAGGATGAGATTTGCATAGAGGTTTCATACGACGAAGATTTGGGCTCTGGGAAGAAATC TGAAACCCTAGCAGCTGCTGATTTGGGAACTAAAGCATGTGATGACATTGACAGGGATGGATACTTGACTGAGAGTGAAA CCTTAATTTATGAGGTCACTGAAGATTCTGGAAAGCGAGGCGGGAGCGATAAGGCCACTGAAGATTCTGGAGAGCGAGGC GGGAGCGATAAAGAATTGGTGCAGAAGCGTGCTGCAGAAGATGAATTGAAATCTGGTCCGGAGAAAAGGAAGTTTTCTGG TTATGATGTGTTGAAAGTCATGGCGGAGAACAATGCTCATAGAAGTAAAGATGAGCCTACTCTGTCTCTGTTGGAAACGG CGAGGCTTATAGGTATAACATTTCCTCGGCCGAGGTGGTGGCCGAAGAATGATGATAGGTTTGCTAGTGGGTTGTTTCTT TTTGAGGAAACTTCTTAA
Protein sequence (LotjaGi4g1v0196500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESPPYDTGLPVASTAIVMVTPPDTQDDTQDGAQDVFHTPREDSSLTSSDNQQPTVTVDFGVVHCSVSKVFDSGTQGFVD LGGFPDESEFMDLGKDSGLGFPEAADEISPGSGGDGMGEIPGIQADQFGVSDADAENQVSDDADAKNQVSGDADAENPSN LDGEQMPEDEICIEVSYDEDLGSGKKSETLAAADLGTKACDDIDRDGYLTESETLIYEVTEDSGKRGGSDKATEDSGERG GSDKELVQKRAAEDELKSGPEKRKFSGYDVLKVMAENNAHRSKDEPTLSLLETARLIGITFPRPRWWPKNDDRFASGLFL FEETS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 312 | 308 | 6.5E-33 | – | |
| MobiDBLite | 20 | 53 | 34 | - | – | |
| MobiDBLite | 106 | 185 | 80 | - | – | |
| MobiDBLite | 219 | 262 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0196500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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