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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0207000 |
Transcript ID | LotjaGi4g1v0207000.10 |
Related isoforms 10 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Oxysterol-binding family protein; TAIR: AT4G22540.1 OSBP(oxysterol binding protein)-related protein 2A; Swiss-Prot: sp|Q940Y1|ORP2A_ARATH Oxysterol-binding protein-related protein 2A; TrEMBL-Plants: tr|K7MLJ7|K7MLJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0207000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:47959734..47966494) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTCGCTGAGTTCTCTGAATTACAAGAGCAGCTCACAGTTCTTTGTGTTGAACGGTCAAATTTGCTTGATACAATAAG ACAGTTGGAGGTAAAATTTTTAACTTGGCTTCTGTGCTTTACCCTTTGAATGCTTCTGACAATTTCCTGTATTTGCGCTT CATTTGAGATGTTGAAAATACTAGTATTTCTTGTTAACACACAAGACGACAACTCCTCTATTTCAATTTTGGTTGATAAA AACATCTAGCTAGATTTCATAAAATTATTACTACTATAACTTTGAGTCCAAGTGATTTATTTCTGAAGTGCTTGTTTTTT TTCTTTAAAAAATGAACTTTTTAATGAGGGTGATAACTTGGATGGGTCAGTTTTCTCTACCAAGGCAGCTTGACAATAAC ATTCATTGGAATATAACTTGCACAATATCCTAAAAGTTTCTTTTAGGACATTCAGTGATGAGACTTATTTTATGTAACGC TTCAGCTTTCACTGTTTTAAATTATTATGGCTTGTTTTATTTCAAACTTTTGCTTTAGCTCCCCAATAATACTAATTTGA ATAACTTCACTGTATATTTTCTTTTAGAATCTTACATGTAATTTAATGAGATGAGATCTCTTGTCATGGTTCTATCCAAT GCTAAAAGTTGTATAAAATGAACTATTTTTTTCATACCCAAATAACCAAAACTATGAAAATGTTTTCAGTACTACAATAG TATGTACTCCATCTATTTAAATACAATCACCTGGCCATATATGGTTTTTTTATTTGTTGTGTAAGAAAAAGGAGAATTAT TGAACTAATTATCACACAAAGGAGTTTGAAATGAATTATTGGACATTATTGTTGTACTTCTGAGTTTGTATACATGGATA TTTACTTGATTAAGATATTTGTGGCTGTAGCTTCATATGACGGGATAAGCTGTTAATGTATTAGTGCAACGCAAGCTAAA GTTGTATTTTTTTTTTTGATAGAAACAAGAACTTTGTCCAATTATGTATGCAGTATGCTACTACATCACATGCTTACCAA AAAAAAAATGCTACATCACATGATATGTTTGTTTAATTTTGTCATGCATTTTGGCTGATTTATGGTAAATTTTCCGAAAG TCTTGTCACTGGTGACTTTGTTTGATAGAGTTTCCTGCCTCTTTCCCCACCCAAAGAAATATCATAAATAATGGTACATA TTGATTACCATTCCCCCCCCTCATATTTATTTTTCCTTTCTTTCCTTGATTTCAATAGTCTTTTCAGTATGCTGATTTTT GCATGTCAGCATGTGTTTAGTTTCTAGATGTGGAAGGTTCATGCCTTTGTCTATGACTTGCTAAACTAATATTTGTTACT GATAATGAACAGGCAGCTAACATTGAACCTGAGGCCTCTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGCACT GTCAAGTCTAGGACGTGGAAAATATAGTGGTACAATGTTATTTGTCACTTATGCTTGTCATTTTAATATATACATATGCT ATGACCTTTCTTTTTCTTATTTGATGTGATAAGCATGTGATTGTAGTTAGAATTGTTGTCTGTCTTATATGAACATGAAA ATTATTGACAGCTATTTGTGAAGTCTTTCTGAATCATGGAAAGTATTTGGCTAATTCTCATTAACTGCATAGTTTGAAAT CCACCTCGTATCAGTAATTTGAGTTATATTCCTCTTGCTGCTGTTTTCACAAACTTCTAAAGAACTTAATTTTTTTATTA TTTTAACTAACTTTTAGCTGCAAGTATGTTTTGATTAAGTTAACATTAGTGGTAGATCCTGGCTCAGGTGAGTCAGGTGA GGAGAAATCCTAGCTCTATACTTGTTTTCTTCTGTTAATTTCTAGTTTAGTCTGTTAGTCAATGTATCAACTTGAGGTAC ATAGTTAACTCAGATTTTGATTCATTTAAAAAGAAAAAATAATAATTCAAAGACGAGCTATTTTCATTGATTTCTCCTCT TTGGATGCTGTATGATCATATGATATAGCATATTGTCTTCTAATAACTGCGGTTATATATATTTGGGTAAATTTTTTTAC AACGATCATGTCTGCAACCTTTGATATATATCTCATTCTCAGTACGTAGTATTAATTTTAACCCATAGAGTTGTCTTTCA GAATACAGTACAACTGAATCATCTGATGATATTGAGAAACAAGAGGTGGAGGAAGTGTCAGATGAAGATGAAATCTCATA TTATGATTCTAGAGAAGATTTTACAGAACCTGGTTTTATTTGTGGGTCAAAAACAGCTTTGGATCAAGTGAACACTTCTG CAGAAGTTAATACAGAATGCATTGATATGGAGAACAGTCATGTCGAAAATATGATCTCTGATTTTGGTTACCCTCAGATA GCAAGGCGAAAAAAGCTTCCGGATCCTGTTGAGAAAGAGAAGGGCGTTAGTCTTTGGTCAATGATCAAGGACAATGTGGG CAAAGATCTTACACGTGTTTGTCTTCCTGTATACTTTAATGAGCCAATATCTTCCCTCCAGAAATGTTTTGAAGACTTGG AGTACTCTTATCTTCTGGATCGCGCTTATGAGTATGGAAAATCAGTAAGATCTTGCTCATGATTATGCCATTCACTGATT CACATGTTGCTTGTGATTATGCCATTCTCTTGTCTTGCAGTGTAAACAAAACAAATTTCAAACTAGTGTTGGTATATGAC TTTATTGTCCATCTGATAGTGCTGAATGAAATGTATGCATTGTCCTTCAAGGATAATGATTTTTAGCAATTTGATTGGTA ATATTGGTAGATTTGTTTCTGAACTTTCTAATAATGTTAAAAGGTTTCATTTACGCTGCTACATTTTTTTTCTGAACTTT CTAATTTTCTCAAAATTATTGTTTTAATGGGAGAATGATAATTGTGTTCAGTCATGTCATTTGTTTTATGTTTGTGTGGG TTGCAGGAGTTGGACTGATTTCTGAATTTCACTTTACCGTACTTAACGGGGGAAAATGGGGAAAGATAGTTGTAATATCT CATGTTAAATTCCACTAAATTGGTTTATAAAATAAAATACACCCTTAATAGTGTAATTAGACTTTTTTGGTCCCTGGTCT TATTGCCTCATAGTTAACTGATATATTTGCTTTCTATATGGTGGTTTTTCACTTGCCTTATAGTCATAGGAGTTTCTAAT AATAATCCAAGGAATTTTCATTAGTTTGGTTTTTGTTAAGTTTTTAAAGCTTTTCCTTAATTCAAGTGAAAGATGACATT TTTTAATACTATTCATGTGGTACTTTTAACTAACTGAATTTTATTTTCAGGGAAACAGTCTTCTTCGAGCACTATACGTT GCTGCCTTTGCAGTTTCTGGATATGCATCATCTGAAGGTCGTCATTGCAAACCCTTTAATCCCTTGTTGGGGGAAACTTA CGAAGCTGATTTTCCTGACAAAGGAATTCGGTTCTTTTCTGAGAAGGTTAGCACTTTATGATTGAATGATGGCGAGATTT TGCTGAGATATAGGTTGTCATCCAACAGTGTATTTGACTTGAGCTAACAAATGTACTTTGATAATATGACTTTTTTTTTT TACGGACGGATAATATGACTTTTCAGTTGTAAACTTAGAAAAAAAAATAGATTTTAAAGAAACTTGTTAGCCTTTTTTTG AGAAGTGGGGTGAAAGTAACGAGAATATTGTATTAACTGGGCTTAGACGTCCAATTGTGATGTCTGAATAAGAATGGTTT TGTTATACTCAAGGTTTTAAAACACCGTCCACGAGTGATTGCAGCCGCAACAGCATGGTTTTGGAGGTTAATCGTGACTT CAATTCTGGTCACTTTAGCTGCATTTGTTTGTAATTTTTTCATAAATTGTGTGATTGGATACCAATTGAGTGCAACATAA ACGGATTTTCATTCTAACACATAATAGAGCTCCATTCACTATTGTCTTGAAGTGGACGACTGTTTGAACTGCTGCAAATG TTAGACGTAACATACCTTATATCTTGTAAACATAACCACAACTGTGATGCCATTCTTTTGGTCATTGAGTTCGTCTGCTC AAATTATTATAAGCCCAAAGATTGTTGGCCGATATATGTTTTCTCACAATAATTATACGTGAAACAGGTTAGTCACCATC CAACTGTGGTTGCCTGCCACTGTCAAGGTAGAGGATGGAAGTTTTGGGCAGACAGTAACATTCGCTCAAAGTTTTGGGGA AGGTCAATTCAGCTTGACCCAGTGGGAGTTCTGACCCTAGAGTTTGATGATGGAGAAATATTTCAATGGAGCAAGGTGAG AATCATGAATGACCCTGTTTGCATGGTCTATTATACTGCCCACTTGTTCTGATTGTTTGGTTTCTCAATTCAATCTTATA TCATACATTTATTCTTATAAACTTATACTTGTTGTTTTTCCTTTAGGTTACGACTACAATTTATAATCTTATCCTTGGCA AAATATATTGTGATCATCATGGGAATATGGATATACGGGGTAATCGCCAATATTCAATCAGACTCAAATTCAAAGAGCAG ACTATTCTTGACCGAAATCCTCACCAGGTAAGGTTTTTCTACTGGTATTTACTAATTAACTAACAACTTCTACTTATCCT TTGGATCCTGGTCTGTCGTTTCTAGTTTATTCATTTGCTTGTTCATTATTTTATTTCCTAATGTGTGTCCTCACATCTTA TTCATTAATGTGTCCTAATGTGTCCTATGTGTAATTAGGTGCATGGATTTATTGAAGATGCAATGGGAAAAAAGGAGGCC ACATTGTTTGGCAAGTGGGATGATAGCATGTATTATGCTAGTGGTGATGTGAATGTGAAGCCAAAAGATTTCACTTCATC AGGGGCAACCTTGTTGTGGAAAAGGACTAGACCACCCCCGAACCTCACTCGGTACAATTTGACATCATTTGCCATCACGC TGAATGAGCTCACACCGGGACTAAAGGTACTATGACGTATTGAATCATGATTCGATATGCATTTTCCTTTATCTTCTTAT GCATCTCTAATTCTTTGTTATAGCCTTTTCTGATGGGTATTTGATCACGGATTAAAGGAGAAGCTTCCGCCCACGGATTC TAGGCTAAGACCTGATCAGCGGCACCTGGAGAATGGAGAATACGAGAAGGCTAATATGGAGAAACAAAGGTTGGAAAAGA GGCAAAGAATGGTATGTTTTTAAAGTTCTCTCGTGTTTTGTTCAAGAAGCACGCGTCATATCTTTTCTTTTTTCTTTCTC CTTTGCATTTGGAGTTCTTGTTTTACCTGACGGTTTCAGAAATGTTGTATGTAATAAGCTATACTGTTTCTCAGTGATTG TTGGACTTAATTGTAACAATTAAAAAAGTTTTTTTTAAAAGGAACAATTAAAAAGTTAAGGACTAATTATGCTCCAAAAA TTATTGGGGTCTAAAATCACAATTGGTCAAAGCTAAGGGGACCAAAGGTGTAATTAAATTAAAAAGAAGTAGACTATTCA TGAATGGATAAATATTGTGAAGAATAGGATGGAAAGAGAGTGAGATAAAATATGAATGCTTATGAAATTCATAAAAAAAG GGGGAAATCATTTATCTTGAATTTATTTTCGGTCTGAATTCTACTATAGAGTTTCTCTAATAAGATTTTTTCCTTAAATC AACATTCTGTGTTTTTTTTTAATTTTTTTTTATTTGAGGCTCTGGATTTGTTTATTCTAAGAATATATTCATCTATTTAT AGATGGATTTTCAATATTGATACTTTGTTACACTACCTTTATAAGAAGAGAATAAAAAAAGTTAAAAGTACTAAAGGAGA TGGAAAATAATGGAGTGTATACAAATTAAAGCTCTTATGGTTTAATTGATAGCTAGAATATTTATGAAGAAAAAAAATAT TCTTTTTTCCTTTGTTGTCTACACTGTCAGCAAATTGTGACAATATCCTTGAGAAACATTTTTTACCTACATTTAGGGTA TGTTTGTATTAGAGTTGGGTGGGATATGAAAGCCCTTCATCCAATCCAACTTTGTTCCTTTGAAAAACTGTATTTTTTTT TGGAATGTGTGCTAATGTGGATTGAAAGTGTATTTAAACACATAGTAAGTATCGATCTAATTTTGTTAAACTATTCAATT CTGGTTCATTTTATACATGTATTGTTGGCCTTTATATAGGTATAATTATTAATTAGTAACTTAGTTTTTTTAAGATATTA ATTAGTAACTTAGTTTTTTTAAGATATTACCTCTTTAGCAAATACAAAATTTACTTGGTCCTAATTAATACCTATAATTT CTTTGACATGTAGTTTGGCTCCTTATTTTTTGAGCCTACCTTATTGCATAATGGTTATTTAAATGTTTGGGAGAGCTTAT CCAAATAACTTAATAGCTTATGAATAAGAGCTTATGCTTTATCTATAACATATCTTCAATTTATTTGAATAAATATTTCT AATTAACTTATGAGTGTTTACACAATAAACCTTAACTCCACAAGTTTTTAATTAAGCTGTTTTCCCGATTGCACCCTATG ATGATCATGCTTTTGTTGTAGTCAAGGAAAATGCAAGAAAATGGTTGGAAGCCTAGATGGTTTCACAGAGAAGGTGAAAA TGGAACGTTTCTATATCTTGGCGGGTATTGGGAAACAAGAGCTCAAGGAAGATGGGATGGATGCCCAGATATATTTGGTG AATATCAAGAAGGCATTGTTGATCCTTCAGATGTTTCTTGA
CDS sequence (LotjaGi4g1v0207000.10) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCGCTGAGTTCTCTGAATTACAAGAGCAGCTCACAGTTCTTTGTGTTGAACGGTCAAATTTGCTTGATACAATAAG ACAGTTGGAGGCAGCTAACATTGAACCTGAGGCCTCTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGCACTGT CAAGTCTAGGACGTGGAAAATATAGTGAATACAGTACAACTGAATCATCTGATGATATTGAGAAACAAGAGGTGGAGGAA GTGTCAGATGAAGATGAAATCTCATATTATGATTCTAGAGAAGATTTTACAGAACCTGGTTTTATTTGTGGGTCAAAAAC AGCTTTGGATCAAGTGAACACTTCTGCAGAAGTTAATACAGAATGCATTGATATGGAGAACAGTCATGTCGAAAATATGA TCTCTGATTTTGGTTACCCTCAGATAGCAAGGCGAAAAAAGCTTCCGGATCCTGTTGAGAAAGAGAAGGGCGTTAGTCTT TGGTCAATGATCAAGGACAATGTGGGCAAAGATCTTACACGTGTTTGTCTTCCTGTATACTTTAATGAGCCAATATCTTC CCTCCAGAAATGTTTTGAAGACTTGGAGTACTCTTATCTTCTGGATCGCGCTTATGAGTATGGAAAATCAGGAAACAGTC TTCTTCGAGCACTATACGTTGCTGCCTTTGCAGTTTCTGGATATGCATCATCTGAAGGTCGTCATTGCAAACCCTTTAAT CCCTTGTTGGGGGAAACTTACGAAGCTGATTTTCCTGACAAAGGAATTCGGTTCTTTTCTGAGAAGGTTAGTCACCATCC AACTGTGGTTGCCTGCCACTGTCAAGGTAGAGGATGGAAGTTTTGGGCAGACAGTAACATTCGCTCAAAGTTTTGGGGAA GGTCAATTCAGCTTGACCCAGTGGGAGTTCTGACCCTAGAGTTTGATGATGGAGAAATATTTCAATGGAGCAAGGTTACG ACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAATATGGATATACGGGGTAATCGCCAATA TTCAATCAGACTCAAATTCAAAGAGCAGACTATTCTTGACCGAAATCCTCACCAGGTGCATGGATTTATTGAAGATGCAA TGGGAAAAAAGGAGGCCACATTGTTTGGCAAGTGGGATGATAGCATGTATTATGCTAGTGGTGATGTGAATGTGAAGCCA AAAGATTTCACTTCATCAGGGGCAACCTTGTTGTGGAAAAGGACTAGACCACCCCCGAACCTCACTCGGTACAATTTGAC ATCATTTGCCATCACGCTGAATGAGCTCACACCGGGACTAAAGGAGAAGCTTCCGCCCACGGATTCTAGGCTAAGACCTG ATCAGCGGCACCTGGAGAATGGAGAATACGAGAAGGCTAATATGGAGAAACAAAGGTTGGAAAAGAGGCAAAGAATGTCA AGGAAAATGCAAGAAAATGGTTGGAAGCCTAGATGGTTTCACAGAGAAGGTGAAAATGGAACGTTTCTATATCTTGGCGG GTATTGGGAAACAAGAGCTCAAGGAAGATGGGATGGATGCCCAGATATATTTGGTGAATATCAAGAAGGCATTGTTGATC CTTCAGATGTTTCTTGA
Protein sequence (LotjaGi4g1v0207000.10) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAEFSELQEQLTVLCVERSNLLDTIRQLEAANIEPEASALHDSEYQLTKNALSSLGRGKYSEYSTTESSDDIEKQEVEE VSDEDEISYYDSREDFTEPGFICGSKTALDQVNTSAEVNTECIDMENSHVENMISDFGYPQIARRKKLPDPVEKEKGVSL WSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYEYGKSGNSLLRALYVAAFAVSGYASSEGRHCKPFN PLLGETYEADFPDKGIRFFSEKVSHHPTVVACHCQGRGWKFWADSNIRSKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVT TTIYNLILGKIYCDHHGNMDIRGNRQYSIRLKFKEQTILDRNPHQVHGFIEDAMGKKEATLFGKWDDSMYYASGDVNVKP KDFTSSGATLLWKRTRPPPNLTRYNLTSFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYEKANMEKQRLEKRQRMS RKMQENGWKPRWFHREGENGTFLYLGGYWETRAQGRWDGCPDIFGEYQEGIVDPSDVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 530 | 530 | 0.0 | – | |
PANTHER | 1 | 530 | 530 | 0.0 | ||
MobiDBLite | 59 | 83 | 25 | - | – | |
SUPERFAMILY | 154 | 530 | 377 | 9.15E-113 | ||
Pfam | 159 | 510 | 352 | 8.8E-122 | ||
Gene3D | 245 | 409 | 165 | 5.7E-22 | – | |
Coils | 456 | 485 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0207000.10, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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