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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0208500 |
| Transcript ID | LotjaGi4g1v0208500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | C2H2-like zinc finger protein; TAIR: AT1G62520.1 sulfated surface-like glycoprotein; Swiss-Prot: sp|F4JJP1|Y4759_ARATH WEB family protein At4g27595, chloroplastic; TrEMBL-Plants: tr|I1MUY4|I1MUY4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0208500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:48363085..48364744) extracted from Lotus japonicus Gifu genome v1.2.
GCGAGTAGTAACGAATAAAAAAGAAAGAAACGAAAAAGAGAGAATCCCATTTATTATGGCGCACTCGCCACATGTCTCTT CCCCTACACACTCTCTCCTTCTCTATTCATAGCAACAACAACAACAACAGCAGAAACAAGAACACGAAACAATGGCTAGT GCGTGGGTGAAATCGCTACACTGCAAGTCAAGAGCATTTGAAGACGTGTTCCACCCCAACCCAAAATTCTCAGCTAGTTG CAGAAAAAGTGTTCAAAGCATCAAAGACATGGTCGACATACCCAAGCCCAAGCCCAGGCCCAAACCCAAGCCCAGAAAAT CAAAGCCTACATTGGAAAAACACCCAAGTTCAAAATACCCATCAACAACAATCACAAACCCCGATTTCCAAACAGAAACC CCCACCATAAACCGCTCACGCAGCACCACCACCACCACCGCCACCGCAACGACCTCTTCTTCCCGTGCCGTCACTGAGCT TCCCGAGGGGCATCCTTCCCGCAACGTGGTCGATATCATCTTTCACAGTAGTTGGGGCCCGAAGCAGTTCCCGGGTCGGG TCGAGATGGTGTTCAAGGTCCAGAATAGTGCGCGGACAGTTTCACGGTTTGACGAGTTTCGCGAGGCGGTGCAGGCGCGC GCGGCCGCTGAGCTCGACGGAGGGAACAATTTCGAGGAGAACGCGCGGTGTGTCGCTGACGGGAATGAAGTGATGCGGTT TCACTGTTTGGGTGCCTACGGCGGCGTTGATGGTGGATGTTCGTGGTCGTTTCCGGAGCGTAACGGGTCGGCGATCTGCA CGTTTGCTGGTAGCGGCGACGCGCATGAGAGTACTGGCGGTGGAAGGGGGAGGAGGGCGATGCTGGTGTGTCGGGTCATA GCGGGTCGGGTCTCGAAGCAGATCGGGTTTCTGGACTCGCTGTTGGATAAGCGAGTCGGGTTTGACTCAGTGAGTGGTGA CAACGGCGAGTTGTTTGTTTTTGACCCGCGTGCGGTATTGCCCTGTTTTCTTATTGTTTACAGGTTGTAAAAAAATGGAA AGTGTTTTTTTTTTTAATATTTTTTTTTACGTTTCTCTAATTTTTTTGAAACTTCTGATTTATTTTTCGTTGGAGTTTTT TGTGGCACATATGAGCATGCATTTATCTACGCAATTTTTTCAGCTTTTGTTAACACTTAAAATGTCTTATGTAATGTAAT TATGATGAAAATTGAGTTGATAAATGCTCGCTTGAAATTCTCTATTTTTCATTAGTTTGCTTGGTTGCCTGTTTCATTTT CAGAGCAGTTGAGGATGTAATATATATTAGAAATCGGGAGGCCTATATATTAGAAATTGGGAGGCCTATACACAACCACA AAAGCTAGCTCAAGAGTTGAGGTTTACACAACCCTTATAAAGGCTATCTATGCTCTATCTCTAGTCAATGTGGGACTTCT AACACACCCCCTCACGTCCAGGACTGAACAACCTGGAACGTGGGATCAACAACAACGGGTGCCCCATATACGGGAGGCCT CCACAACAAACAACAAATGGATCTGGGATAGGCTCTGATACCATATTAGAAATTGGGAGGCCTATACTCAACTACAAAAG CTAGCTCAAGAGTTAAGGTTTGCACTACCCTTATAAAGGCTATCTATGCTCTATCTCTAG
CDS sequence (LotjaGi4g1v0208500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGTGCGTGGGTGAAATCGCTACACTGCAAGTCAAGAGCATTTGAAGACGTGTTCCACCCCAACCCAAAATTCTC AGCTAGTTGCAGAAAAAGTGTTCAAAGCATCAAAGACATGGTCGACATACCCAAGCCCAAGCCCAGGCCCAAACCCAAGC CCAGAAAATCAAAGCCTACATTGGAAAAACACCCAAGTTCAAAATACCCATCAACAACAATCACAAACCCCGATTTCCAA ACAGAAACCCCCACCATAAACCGCTCACGCAGCACCACCACCACCACCGCCACCGCAACGACCTCTTCTTCCCGTGCCGT CACTGAGCTTCCCGAGGGGCATCCTTCCCGCAACGTGGTCGATATCATCTTTCACAGTAGTTGGGGCCCGAAGCAGTTCC CGGGTCGGGTCGAGATGGTGTTCAAGGTCCAGAATAGTGCGCGGACAGTTTCACGGTTTGACGAGTTTCGCGAGGCGGTG CAGGCGCGCGCGGCCGCTGAGCTCGACGGAGGGAACAATTTCGAGGAGAACGCGCGGTGTGTCGCTGACGGGAATGAAGT GATGCGGTTTCACTGTTTGGGTGCCTACGGCGGCGTTGATGGTGGATGTTCGTGGTCGTTTCCGGAGCGTAACGGGTCGG CGATCTGCACGTTTGCTGGTAGCGGCGACGCGCATGAGAGTACTGGCGGTGGAAGGGGGAGGAGGGCGATGCTGGTGTGT CGGGTCATAGCGGGTCGGGTCTCGAAGCAGATCGGGTTTCTGGACTCGCTGTTGGATAAGCGAGTCGGGTTTGACTCAGT GAGTGGTGACAACGGCGAGTTGTTTGTTTTTGACCCGCGTGCGGTATTGCCCTGTTTTCTTATTGTTTACAGGTTGTAA
Protein sequence (LotjaGi4g1v0208500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASAWVKSLHCKSRAFEDVFHPNPKFSASCRKSVQSIKDMVDIPKPKPRPKPKPRKSKPTLEKHPSSKYPSTTITNPDFQ TETPTINRSRSTTTTTATATTSSSRAVTELPEGHPSRNVVDIIFHSSWGPKQFPGRVEMVFKVQNSARTVSRFDEFREAV QARAAAELDGGNNFEENARCVADGNEVMRFHCLGAYGGVDGGCSWSFPERNGSAICTFAGSGDAHESTGGGRGRRAMLVC RVIAGRVSKQIGFLDSLLDKRVGFDSVSGDNGELFVFDPRAVLPCFLIVYRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 292 | 292 | 7.7E-138 | – | |
| PANTHER | 1 | 292 | 292 | 7.7E-138 | – | |
| MobiDBLite | 21 | 112 | 92 | - | – | |
| MobiDBLite | 64 | 109 | 46 | - | – | |
| Gene3D | 96 | 291 | 196 | 5.2E-12 | – | |
| SUPERFAMILY | 107 | 291 | 185 | 1.82E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0208500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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