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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0215900 |
| Transcript ID | LotjaGi4g1v0215900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | proline-, glutamic acid/leucine-rich protein; TAIR: AT4G23020.2 hypothetical protein; Swiss-Prot: sp|B4SM23|SPEE_STRM5 Polyamine aminopropyltransferase; TrEMBL-Plants: tr|A0A151SLD5|A0A151SLD5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:50569716..50574604) extracted from Lotus japonicus Gifu genome v1.2.
CAAGGTTCAAATAGAGCCAATAATCAATAATATATTGAGATTCAAATTTCATCACGCACTAGGATTACAATCTTAGAACC TTCCAAGCTTCTTCTTCTTTGCTCTCCCTCAGAGTTCTCACGTTAATATTTTCGATCCTGGCCAGTATCTTTCAGTTCAC TCTCTTCTCAAGTAGTATTATTTTTATCTCACGGACTATCTTGAGATTTGAAATCTTCCCTTTCGAACCTTCTTCCTTCT TTCTCCTCTATTCCGCTCTCCAACAATATATATAACCCCTTCGAGTACCTATAGTTCTTCACCATACACACATTTGCATA ATTGCTTTCTTCTCTCTCTTTCTACATGCTACAAGCTTTCTCTTCTAATATGGCTCCTAGTTGTAGCAAAACCTTTTGTG ATCATTCTTCACTTGTAAAAATCACCAAACGTCCTTCTCCACTTTTGCTGAAGGACTATCTGAGGGACGATCTGAGCTCG TGTTCATCTAGCGGTTTCAAATCGTTGCCGCGCCGACAATGCTGCACCACCGTTGGATTCTCTAGAGATCCGAAGCTCCA ACGCAAGAAGAGGAACACGCTTCCTCGACAACAATCCAATTCTTCTTCTTCTTCAACCATGTCGTTAGCTCTTCAGAGAG CTTCTGAAGTTGTGATAAACGCAATAAAGTCACTGCCATTGAAGCAAAAGAGTGAGAACAAAGTGAAGAAAGGTGGTGTT GCTCTTTCTAGAAGCTTCTCGAGGAGGCTGTTGAGCAGAAGCTTCTGGAGAAAAGCGGCGGCGAAGGAAGACGGAAGTGG AGGTGTCTCAAAGAGATGTTCATTTCGCGAGCTACTACTGAAGGAACGGGATTATCACAAAACGATGTCGTTGGATGAGG AGACCACGACGACAACGCTCACTGCCACCACGAGTTCAGGTAGTGGTAGTAATAATGATAGCTGGGGGGAGAGCGATTTC ACTTTTTGTGATAGCTCCACGGAAAATGACGCCAAAGAGGAAGAGGATGCGCCACGCCATAAGATAGAAGGAATCAAAAC CGTGGTTAGTTTTTTTTTTTTCCAACTATCTTTATGATTTTTTGGATGAAACCACGTACAGCTTGAGAGACACATAAAAT GAATTATACTAATTATACTAGTTAACCACGGAGTATTAACTAATACACTCAATTAATTTCTGCAAAATCAGATATTATAT ATATATATATATATATATATATATATTCTAGTAAAAATAAAAAATGAATGACTATTGTTCATATGTGACATAATATAATT TTTTTGGTACATTGGAAAGATGTGAGACAATATAATTGAATAGTAGTATTAGTGTAAATTTTATATTAACCATCACAATT ATATTAAATAGGTGGTCTAACTTACCCCATAACCTATTTTAACCCAATCTTAGAATAGTGATATTTGTGATAATTTAGTT AGAAATTTCATAAAATCGCTAATTAATTTTTTATAAATATACTAGAATGAGATTAAATAAAAAAAATTATAACACATTAA ACTAGTGAGATCCGAGAAAACTGTTTAGGGGGTATTTTGAGGATCTTTGGTTTTTAAAATTATTATTTTTTAGTTAAGAA AAAATAGTTTCAAAAGATCGCTTAAAAAATTAATGTTATTTATAGAAAATGGCTTACAAAGTTTTGAAGAACATTTATTA TTTTCTTATATTCACTCTTTTGTTTTTGAAACCATTATATTCTTTTTTTATTTTACATAAGGAAACATAAGGAAGAAATT CATTGTTTGATTATTGGACTTTTGTGAATTCCTTTTTTGCTTCAATATGTTTTTTTTTTAATCATTATCATTATACTCCA TCCGCGGCGCTGAATTCACTGCAATGAGTACATTGCAATTAATTTGGGTGAGTGTTTCAAAGTTACCATGGTGGCCATAA GCGCCATCTGCGGCGTTGAAATTCACTGCAATGGCTGACACTACAGTGGTCACAGTCGCATGCAGACACCATTCAAATAT AGGGGTAGTTTGGGAAAGATGCTTCTGATTTCATCTAATATTTCTGAGCATGACGAAGCTAGGTAGGGACACACTGTGAC ACCGTTACAGTATTCACACTGTTACTAGTGTTATCAGACTCGGACCGGTGATCGATTCGGTCGAGACACTGAGTCAATGA GTCAATGGTTCAACCACTGGGTCACTGGTTGAACCGTTTGACTCGGTGTACATTACAAAATATTCAAAATGTATAATATA ATAAGATAATATTATTGAATAAATTCATACTCTATAAAATTGAATATTTTATCCAAATAACAATCGAATTTATTAGTATA TAAAATATATTTTTTATAATTTATGAATAAAGTATTATGATTTTTTATTATATATTTGTATTATATATTATTGGTTTCTA CGTATATGTTGCTGGTCCAAGATTTCTTTTTTAAACAATCCTAATAGTATGAAGATGGTAACAGGCCCAAGTCTCATTTT GTATACTTTGGCCCAATTAATATGTGTTGTTGACATAATTTTGACTTGTCCTTTGTTTGTTAGTGATATTATATTCAATG AAAACTTGAACTTTTTTTTTGGTCACTATGAAAACTTGAACTTGAACCGGCCATTACAGCTGTAAAGCATAATCTCCTCA TATTACTGCCACATTTTGGCAAACGTGCATCTCCCTCTCTCTCTTCACAATCTCAGAAAAATAGATCTAAAAATATGTTT CTCTACAACTCTTTCCTTGATCTGTTGTTCCAGATTCAGATCTCACTTTTTCCTTCTTCTTCATTACATACAGTACAGAG AGAGAATAATTCCTACAAACGTATGAACTGAGAAACAATGTGAATGATGAGAAAAAAATCCAATTTCTTCATTTTTTCTT CTCATCTGATGTGAATGGGGATAAAGAATCAAGCTTTTCATCTTCTTCTTTTCAACTTTCAAAAAAATCCTCTTCTTTTC CTCATTAAATGACTCACCGGTTCATTCAAATCCGGCCGAGTCACCGGTTTTTCGTAAAACCGGCCGGTTCACTCCGGTTC GTAACGGTGCGATTGCATGCCCGATCTGATCAGTGACTTGAACCGGCCATGCTACCGGTTCACGGTCGGACCGGTTCAAC CGGCCGGTCCGGTCCGAGTCTGATAACAGTCTGTTACACATCCGTGAACGACTCCGGAGTCCGGACTGTCTTGCAATATT TACTCGTATTATTTGATTTCGATATTCTCCAATACATCTCACAAAAATTATTTATTTATAACATATAACAAAAAAAGTAC GTTTAATATTATAAAAACATAAAATATATTCTTTATTTAATAAGTAGAAAATTATTAGTGCTATATTGGGAACAAAATAA AAAGAGAAGGAAAATGTGGAGAATATAGAAAACAGGAATAATTCAAATACTTTTTGTAAAATAATTAATTATATAAATTT GTCCAGTAAAATATTATACAAGGATAACTTTTTTTTAAAAGGGACAATTTTATGAGTTTAATTTTAATATACTGACAGTG TAATTTTTTTAATACATGCATCAGTAATCATAATAAATTAGTTTAAAAGGTTACATAATTTATTATTTTAAATGAATTTC AAATTTGCTTTCTCATTTAGCAAACAAAATTATTGACAGAAAAGCAAAGCATGCAAACGGCTTGCACTTTCACATCATAA GCTCAAAGAACACCCATTGCTTTAGAGGAAAAAATGAGCATTTCCTTTTCATTATTTCACAAAACCCCACTGATTCCGCT CATTCTCTGACTTCCTTTAAAAGATCTATCAACATTGAACTTCAGCATATCTTTCTTTTTTTTGTCTTGAACTTCAGCAT ATCTTAGGTGGAAATATTATTCACTTATGAAATGATTAATAAGTGGGCTTGTGATGGGCCTATTATTTTCTTCTTAAATC AATAAAAAAAAATAAGTGGGCTGACAAAACTTGCAAGTTTTGTCTAAGTAGGAAAACTTTGATTTCTTTTTCTCAAACAG AAAATCAATTGACAAAAAAATAACAAACAGGAAATCAATAAGTAATTTGCTCTGATGAAACAGGATTGGCCATGTGAGAA GGAACAATTCAGTCCAGTATCTGTGCTAGATTTCCCATTTGAAGATGAACAAGTGATGAAGCCCCATTTAAATTCCACAG GAGCCAAACACAAGCATATGCAAAAGAGACGACATTTTAGAAGTGTATCTTCACTGAAGCCTGTGGCTTTAGAGAAAAGG ATCGCACGTTCAGAACTAGATGATATTGCACTACATAATAATAACCATTCTGCAAACAAATGTTCAAACAACGTTAATGA CAATGCCCGGGACCTTGTTAGCTTCATGAAAACCTCAATTCCTTACAATTGTTTGATTTTTGAGGCAGAGAACCTGCTAT TTGACTACTTCAAGCAGAGCAGAATGATAATAATAACAACGACATTGATCATTCGAAGAAGCTTCAACTTTGCGAGGTAG CTGAGGATTGGATAAGAGGGCAGCCCAAAGAAGTGTATTTGGGTTGGGAAGTGAAAGAAAGAAGAGGGGTTTACATTAGG GAGATGGACAAGTGCGAGGAATGGAAAAATTACTCTGATGGAGAAACACAACAATTGGTTCTGGAGCTGGAAAACGAGGT GTTTGCTAGTTTGATTAACGAGGTTGTGCTTGACCTCGCTACATGATATGACAGATTTGATATATGTATGCTTCTATTGT TCTATTTTCGTTTCTTTTTTTGTTTTCGACCCTTTATCCCTGTCTTGGGGATGCGGGCGGCTAAATTTTGGAATAGAGAT AAATTTGGTTTTAGTTATGGTTTTTCTTTTCATGCATGTTTCCCTTAATGCATTGCTTAGATAGGCATGTAGAGTTAGCA TATATCCGC
CDS sequence (LotjaGi4g1v0215900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTACAAGCTTTCTCTTCTAATATGGCTCCTAGTTGTAGCAAAACCTTTTGTGATCATTCTTCACTTGTAAAAATCAC CAAACGTCCTTCTCCACTTTTGCTGAAGGACTATCTGAGGGACGATCTGAGCTCGTGTTCATCTAGCGGTTTCAAATCGT TGCCGCGCCGACAATGCTGCACCACCGTTGGATTCTCTAGAGATCCGAAGCTCCAACGCAAGAAGAGGAACACGCTTCCT CGACAACAATCCAATTCTTCTTCTTCTTCAACCATGTCGTTAGCTCTTCAGAGAGCTTCTGAAGTTGTGATAAACGCAAT AAAGTCACTGCCATTGAAGCAAAAGAGTGAGAACAAAGTGAAGAAAGGTGGTGTTGCTCTTTCTAGAAGCTTCTCGAGGA GGCTGTTGAGCAGAAGCTTCTGGAGAAAAGCGGCGGCGAAGGAAGACGGAAGTGGAGGTGTCTCAAAGAGATGTTCATTT CGCGAGCTACTACTGAAGGAACGGGATTATCACAAAACGATGTCGTTGGATGAGGAGACCACGACGACAACGCTCACTGC CACCACGAGTTCAGGTAGTGGTAGTAATAATGATAGCTGGGGGGAGAGCGATTTCACTTTTTGTGATAGCTCCACGGAAA ATGACGCCAAAGAGGAAGAGGATGCGCCACGCCATAAGATAGAAGGAATCAAAACCGTGGATTGGCCATGTGAGAAGGAA CAATTCAGTCCAGTATCTGTGCTAGATTTCCCATTTGAAGATGAACAAGTGATGAAGCCCCATTTAAATTCCACAGGAGC CAAACACAAGCATATGCAAAAGAGACGACATTTTAGAAGTGTATCTTCACTGAAGCCTGTGGCTTTAGAGAAAAGGATCG CACGTTCAGAACTAGATGATATTGCACTACATAATAATAACCATTCTGCAAACAAATGTTCAAACAACGTTAATGACAAT GCCCGGGACCTTGTTAGCTTCATGAAAACCTCAATTCCTTACAATTGTTTGATTTTTGAGGCAGAGAACCTGCTATTTGA CTACTTCAAGCAGAGCAGAATGATAATAATAACAACGACATTGATCATTCGAAGAAGCTTCAACTTTGCGAGGTAG
Protein sequence (LotjaGi4g1v0215900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQAFSSNMAPSCSKTFCDHSSLVKITKRPSPLLLKDYLRDDLSSCSSSGFKSLPRRQCCTTVGFSRDPKLQRKKRNTLP RQQSNSSSSSTMSLALQRASEVVINAIKSLPLKQKSENKVKKGGVALSRSFSRRLLSRSFWRKAAAKEDGSGGVSKRCSF RELLLKERDYHKTMSLDEETTTTTLTATTSSGSGSNNDSWGESDFTFCDSSTENDAKEEEDAPRHKIEGIKTVDWPCEKE QFSPVSVLDFPFEDEQVMKPHLNSTGAKHKHMQKRRHFRSVSSLKPVALEKRIARSELDDIALHNNNHSANKCSNNVNDN ARDLVSFMKTSIPYNCLIFEAENLLFDYFKQSRMIIITTTLIIRRSFNFAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 352 | 333 | 4.4E-74 | – | |
| PANTHER | 20 | 352 | 333 | 4.4E-74 | – | |
| MobiDBLite | 70 | 92 | 23 | - | – | |
| MobiDBLite | 78 | 92 | 15 | - | – | |
| MobiDBLite | 175 | 201 | 27 | - | – | |
| MobiDBLite | 177 | 201 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0215900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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