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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0217700 |
| Transcript ID | LotjaGi4g1v0217700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT4G22950.1 AGAMOUS-like 19; Swiss-Prot: sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19; TrEMBL-Plants: tr|I1K0E6|I1K0E6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0217700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:51123728..51131282) extracted from Lotus japonicus Gifu genome v1.2.
GCAATCAATCAATGTCATTTATTCCCCTATTTCTCTCTCCTTCCTTTCCATTTTTCATAGCAAAATTGTGCTAGGGTTTC TGTGATTGAACCTGCTGCACTTCTCTTGATCAGAGTTGAGTCTATAAGGGTTCAAAAGATTCTCTATTGTTTGCTTCCAG ATTAAACTTTGTCAGGTTTGAATAGTTTCTATTTTTGGAAACAACTCATGATTTGTTCATTTGTGTCTTGTAATCCTGAA TTAATTAACTAGATCTCGTTTTCTGGGTTTAGACTTTAGATCGATCTTCAAGAGAATGGTTCGGGGGAAAACTCAGATGA AGCGCATCGAGAATGAAACAAGCAGACAAGTAACGTTCTCCAAGAGAAGAAATGGACTCCTTAAGAAGGCTTTTGAGCTC TCAGTGCTGTGTGATGCTGAAGTCGCACTCATCATCTTCTCTACCACAGGGAAGCTCTATGAGTTCTCCAGTTCAAGGTA TGTTCTTCACAAACTTGACCCCATTCTCTTCTAACACACTCAACCTCAACACTAATTTCACTTACCTCCAGCTTTTTGAT TTTTTAATCAACTCATATCATATGAAATTTCTTCTTTTCCATAAGCAAAATAGAATTAATAGGGCACAAGGTGCCCCAAC CAAATGAAAAAGTTTCTATAATTCATTTTAAAGTTTACAGTAATTCTGTTTATAGACTTTTATGAGTAGTACTCTCCGCC GGGCGAAATTGATTACAAGAAAAAATATGTTAATACATTGAGATATGTAAAATCATGATCGAGTTTGTAAACCAAATTAC ACTTAAAGGCTTAACTTCTCACATCTCTTCTTAATTACTATTTCTCTCTCATTTTTATTTGGGAATGTGGTGTTTATTCT ATTTTTAACCTTGTTTTTCCTCTATAGTTTGTACTTTAATAGTTTCACCCATAATCTATAATTTCCTCTTTTGGAAACAC TGTTGATACCTATACGCAGCAATATAAAGATGTTGGTAATTAATTAATGTTATGCCTGCTAGTAAGGCTCGTACCATAAA GGTCATCCCTTTTCAGAGGTGATATTAGTTTGATACCTAAAAATTGCTCTTTTAAATTTCACGTCAGAGAGGAATTTATG GTAAAAATATGCACAGAATAGCAATTTAATTTGAAGAGAAAGATCAGGAAAAGAGATAAGATAACCGATGGCTAGCTAAA TATGGCATAGATCTGCGTCACCACTATGTTGTTACGCATTGTGTTTATAATTAATGATTAAGAATGAAACAAGATAAGTT CAATGAATGGTTTGTCAAGGCCATTTGCTGAGTTAAGAAAAGTGTAAAACCAAAGAAACTTGTTTATATAGTTTCTGATG TGATTATAGTATAATCATTATACTTTTCTTATATTCTTTTTAATCATACCCAACCCTACACGCATATATCACTTGTAGTG CAAAGTAGAAAAAAAGAAATTTATATTTGTGGCTCTTTTACATTTTACTTTAAATAAAAAATAGACCTCATGGAGCCTCA ATAGAAAGCGCAGTGATTAGCTCTCAAATCGTTTTGGAGTTGCTGACGAACATAATATGTAGTTTTTTTTTGCTATTAGT ATGATTGACAACATGGAGCCTCTAGATAGTACAGTTATTCGCGCTCCAAAAGCTTTGGAATTACTGAATGGAAATAATGC TATATATGGAGTTTTTTTTATTGCTTGGTACTCCTATCAATGTAATTTGATAATTAAACAGGTTTTAATATCAATGGCAG CCTACTTGGAATCTTAAGATGAACATTTGCTTTTAGGTAAGTCAAAATTGATATACATGGGAGTACTATGGGTACTCCAA CCATTTACAAAAGATAAGAGCCAGTCCTTTTTGAATGAGTGATCCTTCAAGTTAAGGACTGGCTCTTCATTCATTCGATA AGAGCCAGTCCTTAATTTACAGAAAGAATATTGTTTTAATGATAGAAGATCCTTTAAGTTATACTCGATAGTTGTTTTTG TTAAATTGATAATTCATAATTACCCCAACTTCACTTAATATATTGTGACATAAGAGATTGAGGAATGGGATATATGTGCA TAATGGGAATATAAAAAATTATAATAGAAGGTGAACAAATAATTATCCCTCTTTGCATTTGTCAAATAATAGCCTAATTA AGCCTCTTAGGTGTGGACTGTGTAGTCACAGAGGCCAAGCAATGTCTTGTGGAGTCTCTGAATTCTGAACTATATGGTCA CTTCAACATTAGTATAGAACCCTGTGCAATGATCTTTGTAATAGGGATCACGATCCTCTCTACAGTTACAAAATATCTCA ACCATAAAATAACTTCACATATGGTGATTTTTTTATAAGTATAATTTATGCTGGCTTGGATTGTAGAATTACAGTTGCAT GATGCCATGATGGTACATTTATGATTTGTCTGAGGGATCTAAATCCTAACTGTAGTTGTCTGTTTTTACTTTCTTATTGC TTACCGAAAAAAAAAATTCGAGCCTCATTGTTATGAGTACGAGTGATGAGTTTCTCACAATATATTTTATTATCTCTTTT TACTTCTCTCATTCCTTTTGAACACATGATTTATGACATCTCCTTTTCCTTTTCATGAAATGTGTGTTCTAAAAGGCAAG TGCTAGCGGGTTCGGGCACAGATTAAGGAAAGGAAACATAAGTGTAGAGCTATCTTTTTATTGGAATGTGTAATATTTGA ATTAAAATAGATTATGAATTTCAATTAAAATTTTGATTGATCGATTCTTTAATCAATGTGCTACTGCTAATTGAGGGCAC TGATTAGCTAGGCCCAATATCGATCCTCATGAGAAATCAATTAATTTGATGCTTATTCAATTTTAAATCAAGTGTCATAA GTGAAAATGATCTAGTTTTAATTTATCGTTTATAATTAATATATAATCAATCTTGACTGAGAATTTATGTTGGTGTATTG GAGATGCTTCAGTATAAACAAAATAGTTGAACGCTATCAAAGGAAAGTCAATGACTTGGGTCTCAGCACCAAAGAAATCC AAGAAAATACACAGGTTAGTCACCATGTATATATTCTATGGATATTGTTTGGAATTTTTTTTTTATGAGCATGGATATTG TTTGGATGATGCATGTGATGTTAGCTAGAGGAGGCTAACTACGTTAGACAATGTTCAATCCTTTATCCTTTGCCCTTTTT TTTTAATGGGTTGAATCACCTCTTATGTTTCTTTAAACTGTAACAATCTTCAACCTCTAAAGTGCCTTAGCTTGCATCTC AATATCGTGGTGGAAAAGGTTATAAGTATTTTAGACAGAGCAGGGGGTTTGTTGTCCATTCAAAGAGAGAGGATTCAAAC CTTTTATTCCTAGCCTTTACCCACAACCAAGATCTGAATTGAATGTGCTCTAAAGCTCTTGAAAATTTGACCTCCCCTCT CTGAACAATACATAACTCATGTGAACCCAAATACACTAGAACTCCGCGAGCCAAACTAACACCCACTCCTTCTACACCTC GAACCACCGCAAACCTGAAAATGTTTGAGGATATGGCTCTTATAGTCTGCAGGAAGAACCAAGGATACATCCATCCAACC GTAGACATCCGACAACAATTCCAAGACTACCTGCACGAAAAAATGTGAAGTGCTTTCCTCCAACAAGTGCTAAACTTCTC TTTGCCTCAAATTATCCCTAGTATGGATCCGGTTGTGAAAAATATTCCAATTTTCAAGCAAAAGCTAAAACATTCAAAGG GGCATTTATTGACCATAACTTATTTAAGAGGTTATCTTGCAATTCTCGTTGTGACCAAAACATATATAGAATCATAGGCT GATTTTACTTTGTAGCGCCTTCACATTTTTCTTTTGTCCATACTCATCTATCAGCCAAACCTTCAGCCATATTGAAAACC AAAACTTTCCTTCTCAAGTCTTGTAGCTAGCTAGCTGGTCTTCCTCCCAACACCTTATTTCTATTCTCCACTAAAATATC CACCTCCAGCCCACCCAGCTCTTTTATGCAGCAATCCTGTTGAGTTGAGAGATTATAGAGTCTTTCATACTTATCCTTTA ATATATGCACAGCCAGTTTTCATTCCAAAAGAAGACTTCATTGCCGTCTCCAAGCTTCATGCTCAGACCTTGAACCACCC ACCTTCATCGTTTCCATAACCAAGATTATTTAAATCTTTCCACCAAATCAAAGAGTTATATAGGACAAATTCCTTATATT TAGAGACCATAATTATACTCCAAATAGTGCCTTCTTCATTAATCAATCTCCATCTCCACTTACCAATGAAAGTCTTATTG AATTTCTCCTCGTCTTTAATCCCTAAGCCACCATCTTCCTTTGGTCTACAAAACCTATCCCAACTTGCTTATGAAATTTT GTGAACACTTCCAATCCGCCCCACAAGAACTCTCTCATAACTTCCCTACTTTTCTGAATGAACCTCAATGGCATTCTAAT CATAGACAAATACTAAAGAGGGGTGGCAAAAAGAACACTCTTGATTAAGCATATCATTCCCTCAATTTGTAAATTCTTTT GCCTCCATTAAGATAACTTTGTCTGTAGTTTTTGGATGATTAGTTCCTTAAAGGAAAGCCTTCTAAGATTACATTCTAAA AAAATTCCCAAGTAGAGGAAAGGAACCTGCATTAGTCTGCAGGGAATGAGAGCTGCCCGACTTCGTACTATGCTGATATC AACTAATATGCCTGTTGTCTTGAAAAAATTCACTTTGAGACCCGAAACCAACTCAAAGCTGTGAAGAAGATACTTCAACA TCAACACAACATTTTTTAGAGATGCTTCTCCTATGAATTGAGTATCATCCGCAAATTGCAACAAAGATACCTCAATTGGA TTTCATCCCCAACTCCTAATAGAATGAATCTGCCCGTTGTTACTATTTTCTTAAGCAAATCATTTAAACCTTCCGCCCCC ACCGAAAAAAGAAAGGGAGCAAGAGGATCTACCTTGCCTAGACATTTTCTATTTTAAATCCTCTGTGGGACTTCTAATCA CCAAAACTGAGACTGAAGAGGACTCCACGCAGCCACATATCCAACTTATCCACTTTTCACTAAAATTCATTCTTCTTGAC ATCTAGATGAGAAAGCTCCATTTAACTAAGTCACGCATAGGACGTCTCATAATCAACCTTGAAGACCAAAATTAGACATT TTCTACTGTTAGAAGTCTCACATTGATTACAGATATGACATAGATAACATTTATACATGTAAAGCAATCCTCCAAACTTG AGCTAACTTTTGGGTTGAGTTAGGCCTTCCAAATTCTAATATAGCATCAGAGTCTATCCTAGATCTGTTTGTTGGTGGAG ACCTCTCATATTTGGGTCACCTTGCAGCTGATGTCCAGTCTTGCAAATCTCACGCTCCAAATGTCCAGCCTTAGGCGTGA GGGTGTGTTAGAAGTTATACATTGGCTAGCTAGAGATATGACATAGATAACCTTTATTAAGGGTAGAACAATTTTCAATT CTTGAACTAGTTTTTGTATTGAGTTAGACCTCCCAAATTTTAATACCAATTCATCACTTCACAAATCACCTCGTTTGCAA CACACTTTCCAACACGCTCTTTCGCCGAACAAAAGCAAATTGCTCCAATACCATGTGAGATTTTTCCTAAACTCCATCAT GGCTTGGTTGTTGAAAGAGGTGCACTTCAAAATGGCGAATGGTGTGCGAGGGAAGCGACGATCGCTCTGAGATCTAGGGT TATAAGTCAAGATTGAAGCCAGGGGTAATTTTAGTATTTTGAAAAGAAATAAAAAATGTTGGTGCGTGTCTACACCACTT TCAGCCGGGTGTTTGCTAAACGCTGCCTTCAAACACACACTAACAGTAATGCTAACAAACAGCAAACAAGTAAACTTCTA ACTGATCAAGTAAACTATTGACTGCTGTCATGATTTCACAGTTCATTTGTGTATGTAATTTGATTGCTACTGGGTCATTG ACTGAGAGGATGTAATATATGTGACCTTTTCTGTTTCTTGCAGCATCTAAAAGAAGGTGATCACATGAGCATAGCACGGA TGATCGAGCAGCTTGAAATTTCCAAAAGGTTTAAAGGAAACCGACTTTCTTTGGTTCCATTCTGATTGATATTGAGAGAA TCACATAAACCACTATATATATGCTCAACATTGGAGATTGACTTGTAGGAAGCTTCTAGGAGAAGAGTTGGATACATATG CTATTGACGAGTTAGTACAGATAGAGAACCAGCTCGAATACAGCTTAAGCAAAATTAGGGCAACAAAGGTACTCTAAATC TAGCTGGCAATTTTCTACTTTCTTTCTATTGGACCAAAATGTGGAATAAGAAAAATATGGATCACAAGTTATAAAATGAC TAAATCTTCTATAAAATACATATTGTAATAACATGTGCTAAATGTCATTAGAAAAACATGGTTCATAGGTGATTAGTTTT TAATATAATACACCATAAAATTAAATTGATTAATTATGATATTATGTTATTTGCTAATCAATAAACAAGACATAACGCTG AACAACTTGGTGTTGCTTTGTGCTCAGAGTCAATTGTTCAAGGAACGAATTGAGAAGCTAAAAGAAGAGGTAATATTACT TTCTTAGTTGCACGATTATCTTTCTTTCATGTTTTAGATTGCTTTGAAGAATTTTCATGTTCTGTGGGCTCACTTCAGGA AAGGTCACTGCTGGAAGAAAATAAACGCCTACAGGTAAGTATACGTTTGGAAATTCTTCTACAATTTAACATTGAAGAGA GAATTTGGGAGTAGTTTCTGTGAGTGACCTTTGGATTTCGGAATTGATTCTTATAAAAAAAATCTGATTCAATCATGTTA TTAGTCTTTACCTATGTAATTTAAAATCTCCTCATTCATTAAACAGATTATATTCCTTAGTTTATTTCATCGATCGCATC TCATTAGTGATCATATCATTTTTATTCTCAAGTTTCATTTGTGGTATCAAATGCAAAATAGTTAAGAGTATATATGCGCA TCTCCTATAACATGCTACAAATCTAATTAATTGAATGATCAACTTCTCTTTTCAATTTCCACCTTGATTAGAAGCTAATT TGTAACATCATTTCATCATTGTAGTGTCGGTTTGAACAACAACGTTCTTCAAATAAGCCAGATGTTGAACTCATCGTGGA AGAGCAAGGTGAGGAGGAGGTGGAGACGGAGTTGTTCATAGGGCGACCCGAGAGGCGAATTCCTTGAAATTAAAGTTGAA AGCTGCAAGAAATACATAATGCTACAAAGGTTTCTATCTAATCACTATATTTTGCTGTTCGAAGAAAAAAAAATAGTACT AGTATATACATAAGCAGGGCTGTAATCTGCTTCCCTCATCCTGTTATCTTTCATTTCTGGTTAAGATACTTAATTCGTGT TGTGTACCAACAATCACAAGGATGATTGTGAACTGTCTAACTAAAATAATTCCTTTCAACAAAGTCCTAATATTCTAACG GATTATTTCAATTTCGGATCTTTGATTTGTTTAAA
CDS sequence (LotjaGi4g1v0217700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCGGGGGAAAACTCAGATGAAGCGCATCGAGAATGAAACAAGCAGACAAGTAACGTTCTCCAAGAGAAGAAATGG ACTCCTTAAGAAGGCTTTTGAGCTCTCAGTGCTGTGTGATGCTGAAGTCGCACTCATCATCTTCTCTACCACAGGGAAGC TCTATGAGTTCTCCAGTTCAAGATGCTTCAGTATAAACAAAATAGTTGAACGCTATCAAAGGAAAGTCAATGACTTGGGT CTCAGCACCAAAGAAATCCAAGAAAATACACAGCATCTAAAAGAAGGTGATCACATGAGCATAGCACGGATGATCGAGCA GCTTGAAATTTCCAAAAGGAAGCTTCTAGGAGAAGAGTTGGATACATATGCTATTGACGAGTTAGTACAGATAGAGAACC AGCTCGAATACAGCTTAAGCAAAATTAGGGCAACAAAGAGTCAATTGTTCAAGGAACGAATTGAGAAGCTAAAAGAAGAG GAAAGGTCACTGCTGGAAGAAAATAAACGCCTACAGTGTCGGTTTGAACAACAACGTTCTTCAAATAAGCCAGATGTTGA ACTCATCGTGGAAGAGCAAGGTGAGGAGGAGGTGGAGACGGAGTTGTTCATAGGGCGACCCGAGAGGCGAATTCCTTGA
Protein sequence (LotjaGi4g1v0217700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTTGKLYEFSSSRCFSINKIVERYQRKVNDLG LSTKEIQENTQHLKEGDHMSIARMIEQLEISKRKLLGEELDTYAIDELVQIENQLEYSLSKIRATKSQLFKERIEKLKEE ERSLLEENKRLQCRFEQQRSSNKPDVELIVEEQGEEEVETELFIGRPERRIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 60 | 60 | 8.4E-41 | ||
| ProSiteProfiles | 1 | 61 | 61 | 32.071 | ||
| PANTHER | 2 | 185 | 184 | 2.9E-74 | – | |
| PANTHER | 2 | 185 | 184 | 2.9E-74 | – | |
| PRINTS | 3 | 23 | 21 | 3.7E-31 | ||
| SUPERFAMILY | 3 | 76 | 74 | 1.01E-31 | ||
| CDD | 3 | 73 | 71 | 4.45412E-40 | ||
| ProSitePatterns | 3 | 57 | 55 | - | ||
| Pfam | 10 | 57 | 48 | 5.0E-27 | ||
| Gene3D | 13 | 78 | 66 | 1.9E-28 | ||
| PRINTS | 23 | 38 | 16 | 3.7E-31 | ||
| PRINTS | 38 | 59 | 22 | 3.7E-31 | ||
| Pfam | 91 | 175 | 85 | 3.5E-20 | ||
| ProSiteProfiles | 91 | 181 | 91 | 13.466 | ||
| Coils | 147 | 174 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0217700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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