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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0220400 |
| Transcript ID | LotjaGi4g1v0220400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G24255.3 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|A7MU49|HSCA_VIBCB Chaperone protein HscA homolog; TrEMBL-Plants: tr|I3SCE4|I3SCE4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0220400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:51833077..51839869) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATTTCAAATATTATTATTTTCAAAATAAAAGTATTTTATTTTTTAGGAAATACGTTGTAAATGTCGGGGGGTAAAT GGTCACTTTGGTCCTCAAAAGTGTCAACCGACTTCACATTCGTCCCTGAATGAATTTTATTCACCTCGTAGTCCCCCAAA GTGTCAAACGTCCGTCACTTTAGTCCTTGACGTTAAAAAACACAAACGGACGTTAACGGAAGATTGAGTTGCAACGTTGG GAAAGTTTGAAATGCTTCAATTTAATCCTTGATGGATTTTTCCTTCATCTTCCTCAACCTGCAACCTTCATCACCTCAGA TCCATCCCAGAAATCTTCATCTTCCTAATCAAAAGCCATCCCACATCCACCTCTTTCTGGATCGACCCCCTTACCACCAC CATGGCCACTCTCTCATCCCTCCCAGCAAGCTCGCAAAATCAACAATCACAAGCTTATCCCCCGCGTTCAAAAGTGAGTC AACAAGGTCTTCTGCCGAAGTCACCTCTCTCATGTTTGGTTGAAGACCATTTTCCCACCATTTCTGAACTTTCCCTATTC TTGAGGTCATCTGCAAAATCCAATAAAAGTAACAACATAGGTCAGAAAAGATCCAATAAACCCATTAGAAATTAAGAAAC TTTTCCACCAGAGGCATAAATGGTGTCAAAGGGAAATGTAGCAAGCTGTACACATATGTAGATTTATGATATTTGAAACA AATGGCTACAGGAAATAAAATTTGTGCAAGTATTATTGATGTATTAATTAAATTAATACACTACTTTCAGGTATTGATAA TCATAACTACTGTATTGTATACTTTGTGTGAATTGGGTTACATATTTAATTGCAAGTGAACCTGATCGTGAATTACAAAA ATAAAACTGTGTTATTGATGTTACTTTGTTGCCCCTGTCACTGGTACCAAATCCTTCCCCCTTTAACTGGAACAACATCA TAAGGTGCTACACTAGGCTAGACACTCCACGCAATGCACTCCATGTCCATGTTTTGATTCTGCAAGCTGGGGTTTTGCCT GATCGCTACACCCTCCCAATTGTTCTCAAAGCAGTGTGCCAATCCTTTGCCATTGAGTTTGGAAAGCAGGTTCATTCACT CGGTGTGAAGATTGGATTGCAAATCTATGAGTATTTTGAAACTGGGTTAATAAACTTGTATTGTAAATATGGAGAATTTG CAAGTGCCCGTATGCCGTTTGATGAAAATCCTGACCCAAAGCTTGGTTCTTGGAATGCTATTATAGGTGGGCTTGCTCAA GCTGGGATGGATCTGAGGTGATGGAGGTTGCAGGTTGAGGAAGATGAGGATTTGGGGAAAAATTCAGAACAAGGACAAAA TTGAAGCATTTCAAACTTTCCTAACGTTCTAACTCAACCTTCCGTTTGTGTTTTTTAACGTCAAGGACTAAAGTGACGGA CATTTGACACTTTGTGGGACCGCGAGGTGATTAAAATTCATTCAGGGACGAATGTGAAGTCGGTTGACACTTTTGAGGAC CAAAGTGACCATTTACCCAAATGTCGGGATTGATTGTAATGTAAGTCCCACATTGTTGCCATGATGGCGATGCCGGGTCT GATGATGAGGATTCACGGTGGTCTAATAATGGGTCCATGCCATTTTGGGCGACGCCTACCCATTCTGGTGGGGGCGATGA TGACCTCGATGATAATTTTGGGGATGGCGGGATAGGGGGGCTTCAACGCTGCCAGATGCGGAAGAAGCAGTGGGTGGTGA CGGGCACTCCGGCGGGGAGCAGTATGGTAACGTGCTGTTGGGGGATGGCAATAATCAAGGGAATACGTTAGCGAATATTG ATGGGAGGCCGTTGACGGCGTACGCAATCAATACGCAATCAGTTACCAATCATGAAGGTTATGTGGGAGTTGAGAAAATT ACAGTCTCTCAGGCTGCTGCAGAGGTTGATGGGTTTCAAATTATTCCAATATCCTCTGCTGTGGGCCCCACTTATGAATT TAATTTAAATTTGGGTGCTGGGGCGGGTCAAACCTTATTGGAACCTGTTGCTCTCCAAACCGGGTCTGGAGCACTTGTGG GTGAAATAGTTTTAGCCACTCATTCTTATCCTGAGGGGCCCACGTTGAACCATATCTCACCAAGGCAATTGCAAACTGAT GATGCTCAGCGTGAAAATTCTCACCCAAATTCAAGAACGCAAAATTGTGGGGATGGTAGGGGAAATTGTTTGCACAATCG ACCTACAGGGGATGCGAATTTGGATTCTCACACTGGGGAGGGTGATCCTGGAACACTCATGGCTTCTACTATGCGCCCTT TGGAGGGTTTTGAGGTGAACCAAAATCCCTTCGAGGCTCTGATGAGGAATGTCAATTCCACAGCATCTGGGAGAACAACC TCTTCAGACTTGGGGGACGAGCTTCGCCAAGTAAGTATCTCTGGTACTCGTAAGACCTTGCGTCTCAGGAGCTTCTCACA GTGTTCCTCTGTCCCGGACTCTGTTCTACATATACATAATAAGGCTGCTTGGGTTGGGAGTGATTTTGCTAAAGCTGAGA GACTGTGGGAGTTGGGCAGGGAGATTGGGGTGGCTTGCGCTGGTAATGATGGTGAGATAATCAGTAGGCTTGTTGCTCTG GAACAGAGGGACGCTGGGGTGTGTCAACCACAAATCAGTGGTGCGGCGGATAGGGTTAATAGTGTCCAATGAAGGTTCTC TCCTTTAATGTGCGTGGTTTGGGGAGTTCAGGAAAGAGGAGAGTTATTAGAGAGCTTGTGGGGCAGAATCACGTTGAGCT ACTGTGTTTGCAAGAGACAAAGGCCCAGACCATTGATAGAAGAATTTGCAACCAGGTTTGGGGAGACTCTGAGTTTGATT GGAAAGTTGTGCACGCTGTAAACAGGGGGGAGGCCTGCTTTGTGTGTGGAGGAAAAATCTGTTTGTGTTAGAGAACAGTG TTGAAGGGACAGGAATTCTTGGGCTGATTGGTCTTTGGGGGAGTCTCAAAGGAGGTGTGTGATAGTGAATGTCTATGCAG GCTATAGTATGGAAGAGAAATGAGCACTTTGGCATGAATTGCTTGTGTGGCGTTAGAGTTGCCCTGTTGATGTATGGTGT GTAGGGGGGGACTTTAATGCAGTAAGGTCCGAGGATGAAAGACGTGGAAGGGGTAGTGCAAGGAGCTTGGTCGCACAACA CCGATAAATGCATGAATTTAATGAGTTTATTTCTGATATGGGCCTCTTGGATATCCCGATGGCCGGCAGGAAATTCACGT GGCGACGACCAAATAATCAAGCACAAAGCAAACTTGATAGGTTTCTGATTTCGTCGGAATGGAACACATTGTGGCCAGAT TGCTCTCAGTTGGTGCTGAATAGAGATATCTCCAATCATTGTCCTCTTCTTTTGCGGCAAACAATTCAGAATTGGGGACC AAAACCTTTCAGAGTTCTTAATTGTTGGTTGTAGGACCTGAGAATTATTCCGTTTATGGAGAACTCTGGGAAGGCGTTTC AGGTTCAGGGGTGGGGGATGTATGTGCTTAAGGAAAAGCTTAAGGGAATCAATGGCAGTTTAAAACAGTGGAATATTGAT GTGTTTGGCCACTCGAAATCTAGAAGGGAGGCAGCGGTTAGGAGAATAAATGAATTGGATGCGAAAGAAGAAGATGGGGG TTTGACCTAGGAGGAAGTGCTCACAAGGCAAGAATCTCTTATTGAATTCTGGAATGTTTTAAAATTGCATGAGTCTTTGC TGTGTCAGAAAGCTAGATCAAAGTGGGTATCGAAAGGTGGTCAAAATACTAGCTTTTTCCATGCCACAAATAATTGGAAA CGGCGAGCTAATTCTCTTGTGGGTTTATTGATTAATGGGGGTTGGGAGGAGAATCCTGATAGAATTAAAGTTGCTGTTAA AAATTTCTTTGAGAACAAGTTCAAGTTAGATAGTTGGTCTCGTCCGAATCTAGATGGTATCCATTTTAAGTCCCTTTCTG AAGCGGACAATGCTGATTTGGTTGCTCCTTTTGATGAGGGGGAAATCAAAGAAGTTGTGTGGGCATGCAGAGGTGACAAG AGCCCGGGTCCGGATGGGTTTAATTTTAGATTCATTCAAAAATTCTGGGGTTCAATGAAGATGATTTTATCAGAACCGTT AGAGAATTTTGGGCTAATGGTGTTTGGTTGAGAAGGTGCAATGCCTCCTTTATAGTTCTCATTCCTAAGGTTAATTTCCC TCAAAATCTTAATGAGTTTCGACCGATCTCTTTGACTGGGTGTATTTATAAGCTGGTTTCTAAGTTGCTTGCCAGTCGGC TAAAATGTGTTCTTGGGAAGCTTATTGATGACCGGCAGTTTGCATTCATTGGTGGGAGGTATATGTTAGATAGTGTGGTT GTGGTGAATGAAGTTGTGCATGAGGCAAAGACTCGGAAAAAACCAACAGTTATTTTTAAGGTGGATTATGAAAAAGCTTA TGACTCGGTGCAATGGGAGTTTTTGTTTTACATGATGCGGAGAATGAGCTTTAGTGAGCAGTGGATAGGGTGGATTAAAG GGTGTCTTGAATCAGCATCTGTCTCAGTCTTAGTCAACGGAAGCCCGTGTGATGAGTTCAGAATGGAGAAGGGTCTTAGG CAAGGTGACCCCCTTGCCCCGTTTCTTTTCCTCATTGTTGTTGAAGGCTTGAATGGGTTGTTCATGAACGCAGTTAACTT GAGTAAATCCAGTGGGTTCAAGGTCGGGGGAGCAAGCTCTGTGGATGTTGCCTTACTCCAGTTTGCTGATGATACTATCT TTCTGGGAGAGGCAAGTATGCAGAATATGATTGTCATCAAGTGTGTCTTGAGGTGCTTTGAGTTAATTTCCGGGTTGAAG GTTAACTTTAATAAAAGTAAGTTGGCGACTATAGCAGTTGAGGAACCTGTTACTCAGAGTTTCATGGCTCTTTTGCATTG CAAACGAATGAGTGTTCCATTTACTTACTTGGGGATTCCAGTGGGAGGGCGTCCAAAGCTTCAGAAAACTTGGGAGCCGG TTATCAATAAATTCAAAGCCAAGTTGTCTTCTTGGAAACTTAAATCAATTTCATTTGGAGGCTGAATTTGTTTGATTCAG AGTGTACTAACAGCGCTGCCATTATTTTATCTCTCCTTTTTCAAGCTGCCCAATATTGTGGAGAAGATTTGTACTGGAAT AATGAGGGACTTTTTGTGGGGAGGGGGTCATGACTTGAGGAAAACAGCTTGGGTGAGTTGGGCGTCGGTTTGTAAGCCGA AGGAGGCTGGTGGACTTGGCATTAAGGATATGTTTTTATTTAATAAATCCCTGCTTGGCAAATGGAGGTGGAGGTTTGCT ACTAAACCAGATAGCCTTTGATGCCGTGTGATAAAGGCTAAGTATATGGGCAGCAATCCGATGAAATTGTCTCCATGGTG GAATGATATTCTAAATTCTTGTTGTGATGAGAGTGGTGATTGGTTTGAGCTGGGTATTCAGAAATCTATCCGTAAAGGAA ATGCAACAAGGTTTTGGAGTGAGAACTGGACGGGTAATGATGCTCTCTGTGACAGGTATCTTAGGCTCTATAATTTATCC ACTATGAAATATGTGTGCGTGCAGGATTGTGGGGAGTGGTGCAATGGAGTGTGGTGATGGTGCCTTATGTGGAGGAGAAC TCTTGCTGATAGAGAGCATGCGGGGTGTAATGCCTTTCTTGAGGAGGTTAATTGTGTGCCACTTTCTGAAGGTGTCCTGG ACAAGTGGTGTTGGCTCCCAAGTTCTGATGGGATTTTTACAGTTAACTCTTTCAACACTTTTTTGCGGGTACCTACTGTT AGCCCCCCATATTTGGTTCTATCTCGAGTTTGGAATTCTGTTGTCCTGACCAATGTATAGACATTTTTGTGGCGGCTTGT GCTGGATAGAATCCCAAGCAAAGAGAACCTGTGGGGGCGGCATGTAATTCATATGGAGGACCAAAGGATGTGTGTGCTGT GCCATTTGGAGGTTGAATCTTCTGAGCACCTAGCTTTAGAGTGCCCCTTCTCCCTTGATATTTGGTATGGTTGTTTCCGT TGGATTGGGGTGCTTACAGTTCTTCCAATATCCACTCGAGAGTGTCTGCTGCAGTTTAACTTTGGATGGAATGGCTCACA ACAGAGGGGTGCTTTTTCTATTTTAATGGCAGCATTGTGGTCTATTTGGCTGGTTAGAAACTCAACTGTTTTCAGAGATG GGGAGCCGGATTTTTCCACTGTAATGGAACTAATAAAGTGGCGGTCATGGTTGTGGAACAGATCAAAGTTGAAGGGTTTC ACTTGTCCATTATTTGAATGGTCTACGCAGCCATTGATTTGTTTGGAAGGATTGTAATTGCTATGTCTGGTTGTTGCTTG TCTAGGCTTGGTGTATCAGATATTTTGTTGGTTGCTGGGATTTTAATTGGTTTTTGCTGATATGGTGTGGGGTATCTTGC TGTTTGTGTACAACTTTTGGGTTAACATTGGAATGGGGCTTTTGTTTGTTTTTTTCTTCCTTTTCTTTGCTGTAATTTTT TCTTCCTTTTCTTTGCTATATTTCTTGCTTGTATTAAGGGTTGGAGTACCCCTTGTACTCCCCTTTAATGCAATATTGGC TTATAAAAAAAAACATTTTAAATATTATTATTTTGAAAATAAAAGTATATTTTTCACGAAATAAGCGGTAAATGTTGGGG TTGATTACAATGTAAGTCTCACATTGCTTATGTTGATGAAGGAAGAAAGAGGTTAAGGAAAACACTTGGAGAA
CDS sequence (LotjaGi4g1v0220400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGACCAAAGGATGTGTGTGCTGTGCCATTTGGAGGTTGAATCTTCTGAGCACCTAGCTTTAGAGTGCCCCTTCTC CCTTGATATTTGGTATGGTTGTTTCCGTTGGATTGGGGTGCTTACAGTTCTTCCAATATCCACTCGAGAGTGTCTGCTGC AGTTTAACTTTGGATGGAATGGCTCACAACAGAGGGGTGCTTTTTCTATTTTAATGGCAGCATTGTGGTCTATTTGGCTG GTTAGAAACTCAACTGTTTTCAGAGATGGGGAGCCGGATTTTTCCACTGTAATGGAACTAATAAAGTGGCGGTCATGGTT GTGGAACAGATCAAAGTTGAAGGGTTTCACTTGTCCATTATTTGAATGGTCTACGCAGCCATTGATTTGTTTGGAAGGAT TGTAA
Protein sequence (LotjaGi4g1v0220400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDQRMCVLCHLEVESSEHLALECPFSLDIWYGCFRWIGVLTVLPISTRECLLQFNFGWNGSQQRGAFSILMAALWSIWL VRNSTVFRDGEPDFSTVMELIKWRSWLWNRSKLKGFTCPLFEWSTQPLICLEGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 111 | 109 | 2.6E-16 | – | |
| PANTHER | 3 | 111 | 109 | 2.6E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0220400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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