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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0220500 |
| Transcript ID | LotjaGi4g1v0220500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein PP2-A13; TAIR: AT1G12710.1 phloem protein 2-A12; Swiss-Prot: sp|Q9LN77|P2A12_ARATH F-box protein PP2-A12; TrEMBL-Plants: tr|V7CE44|V7CE44_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0220500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:51840102..51843039) extracted from Lotus japonicus Gifu genome v1.2.
TGGATATATAGCACTAGGTGGTTTTGCCTTTCCGTCCTACAGCACACCCAAGTCAGATCCCGCTGTCGTGTTCGCTTTCG CTTTCCGAGGAATCAAAAACAAACAAACAAACAATGCTTCTTCTGCTATCAAACAACTCCTCACAGCTGTGACCTGTTTC ACCTTCGCATATAGAGAACAACAACAACAACAACTCTCGTTCTTCTTCTTCTTCTTCTTCTTGTTGATTCTGGACGATTT TGGAAGCTTCTAGTTCCCTCCCTCGTGTTGCTGGTTGATGGGGATCTGGTTTTCTTCAACTCCTTCACCGGAGTCGGCAT CCAAATCGAGTTTAGGCGAATTGCCGGAGTGCTGTGTGGCGGTGATGATGGGTTACATGGATCCGCCGCAGATTTGCAAG CTCGCCCTCATGAATCGCACTTTCCGCGGCGCTTCAATGGCGGATTTTGTCTGGGAATCCAAACTTCCGCCAAATTACCA CCTTCTCCTCCGCCAAATCTTCGACGATTTTCCCTCCGATTTGGGGATGAGAGGGATTTATGCGCGCCTTTGCAGGGTCA ATACTTTCGATGAAGGCACCAAGGTAACACAACACAGTTTTTTTGGTGTATATGCAAGCTTTTTTGTTGATTTTATTGGT TTTGATGTTTGTAGAAGGTTTGGTTGGATAGAAGCATGGGGAAGCTGTGTATGTCTATATCTGCAAAGGGGTTATCCATA ACGGGGATTGATGATCGGAGATATTGGAACCATATCCCCACTGAAGAATCTAGGTGAGCTTCTTCATTTATTTCTCATTC TTGTTTCTTAGCTTTTTGAGTTTTTTTTGTAATTGGAATTCGGTTGGAATGGAAAGGGGGAAATTGATGTATAGGAACAA TTTCAATTTCGGTTTCTTATTAAGGGTTGATTCTGCAAGGTTGAAAGTTTTCAATGAAAATCACTTCTTTTTTTAGACTT GCTTAGTGGATGGAAAATCAAATGTGAACCATTTTCACTCTGTCCTGAATTTTTACTTTCTCATGTTCCCCCCTGCTTAA TCAAGCTAACCATAACCTCAAATACTGGAGGGGCTAATAATGCCAATATCAATGTTCTATATCCTATTCCCTCCATCCTT CATGGTGATCCTTTTCTTTGCTAACTTGGTTGTTTGTAATTTTTTCGAGTATAATGTTTCTATTTTTGCAGTTTTCCCCT TTGTTTTGAGACTGGATATTTTATATACTCAAAAGGAGAATTTTCTCACTACAAGTTCTTTTTTTTTTCCCTGTCAAAAA TTAATTTCTCTGCACTATCAGTCTTGGAGTGTTTTTAAGTAAATTATGCACTCTATCCCTTTATTATTTTGAAGAAAGGT ATTCATTAGGATTATTAAATCATTTCAACCATAGGATGGATCATGGAGTTCAATGAACGAATCCATTTCGAGAATTTTCT TTTGGACAAGCTATCAAGTTAGAAGGGGCTAACTTTGAAAGTAACAGTCAAGTATTCATGTTCAAGTGTATTATGACATA GTAACTTTTGTGGATATTTGTATTCCCCCCCTTGTTCTGTAGCCTTCTGTCTGTGCTATATGTTCTAAATCCCCAACATT TCAAACTTGTAGCTTTTGGTATTGTTCTGTATTGACTGAAATTTGTTCTTGGCTTGTGCTGTCATCAAGGGAAACATGTA GATATTGATGAAGACTGCACTTCTTTTCCCATTGTAATTTTGGTTGATGATGCAAGTTGTGACCCTTAAGTCATGGAATT TAACTGCCAAATTAGTAGGTCTAGTTTAAATGCTGATTGATTCACTTTGATAGAGCTTTGGTATTAAATCTGTTGTTTAT GTCTATCATTTGCAGATTCAGCTCTGTTGCATACCTCCAGCAAATCTGGTGGTTTGAAGTGGATGGAGAAGTTGAGTTCC CATTTCCACCTGGGACATACAGCTTGTTCTTCAGACTACATCTAGGGCGAGCCTCCAAGAGGTTCGGCCGACGTGTCTGC AACACAGAACATGTTCATGGCTGGGATGTAAAACCTGCGCGGTTCCAGCTCTGGACTTCAGATGGACAGTACGTTACATC TCAGTGTTTTCTGAAAGGACCAGGCAAGTGGCGCTATTACCATGCCGGAGATTTTGTGGTTGAGGATGGCAATGCGTCAA CAAAAATCAAATTCTCCATGACTCAGATTGATTGCACACACACTAAAGGTGGTCTCTGTTTAGATTCTGTGCTGGTGTAT CCAAGTGAATTCAGAAAGGTTAAAGCATTTTTGAACAACTCTTGACCTTTTTTGTGGTAATAATTATACTGTAATAGTAT TTAATATGTATAGAGCTTAGGAGTGCCAGGAGGAATAGAGAATCAAGTTTTTAATATGGTTCTTTTAGGTTTAGAATATT GTAGGAGCCAGAATGCGATTGATGTATATATGTTCATTATCTTTTATGTGTAACTGGTCTGGAATGTTCTATCTTAATCT TGGACTGTGAGGATTGTTGAATACGTGTGGCACGTGGAGTCACTATCTTAATATTGGATTAGGTTAGAAGGAGTACTTTA TTCGTTTATGGGACAAAGTGGATTTTTTATTTGCTCTATATGGATATGAATTGGCCACTTGGTATTCCTTTTTACTTGTT TATCTTGGTTTGGTATGATTGAGATTAATGTCGACGGCTTGAACTTGAATGTGGTTGTGCTTGGTTGTCGTTAACGTGCA TTCTGACTCAATTCTGGTGGAGATGATATTCTATCACTTTTATTATTATTTGTGCAATTCGTGTACTTGTGGAGTCAACT AGTCAACCTTTGTAGTGCTTCTCAGGCCAAACTAATACTATATGTAAAGAGAGTAAATTTTTTCTTCTCAAAATCAATTC TGATATTTGATATTTGATATTTGAAGTTATTATTTTCTTAAGCTTCTTCTCAGATTTA
CDS sequence (LotjaGi4g1v0220500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATCTGGTTTTCTTCAACTCCTTCACCGGAGTCGGCATCCAAATCGAGTTTAGGCGAATTGCCGGAGTGCTGTGT GGCGGTGATGATGGGTTACATGGATCCGCCGCAGATTTGCAAGCTCGCCCTCATGAATCGCACTTTCCGCGGCGCTTCAA TGGCGGATTTTGTCTGGGAATCCAAACTTCCGCCAAATTACCACCTTCTCCTCCGCCAAATCTTCGACGATTTTCCCTCC GATTTGGGGATGAGAGGGATTTATGCGCGCCTTTGCAGGGTCAATACTTTCGATGAAGGCACCAAGAAGGTTTGGTTGGA TAGAAGCATGGGGAAGCTGTGTATGTCTATATCTGCAAAGGGGTTATCCATAACGGGGATTGATGATCGGAGATATTGGA ACCATATCCCCACTGAAGAATCTAGATTCAGCTCTGTTGCATACCTCCAGCAAATCTGGTGGTTTGAAGTGGATGGAGAA GTTGAGTTCCCATTTCCACCTGGGACATACAGCTTGTTCTTCAGACTACATCTAGGGCGAGCCTCCAAGAGGTTCGGCCG ACGTGTCTGCAACACAGAACATGTTCATGGCTGGGATGTAAAACCTGCGCGGTTCCAGCTCTGGACTTCAGATGGACAGT ACGTTACATCTCAGTGTTTTCTGAAAGGACCAGGCAAGTGGCGCTATTACCATGCCGGAGATTTTGTGGTTGAGGATGGC AATGCGTCAACAAAAATCAAATTCTCCATGACTCAGATTGATTGCACACACACTAAAGGTGGTCTCTGTTTAGATTCTGT GCTGGTGTATCCAAGTGAATTCAGAAAGGTTAAAGCATTTTTGAACAACTCTTGA
Protein sequence (LotjaGi4g1v0220500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIWFSSTPSPESASKSSLGELPECCVAVMMGYMDPPQICKLALMNRTFRGASMADFVWESKLPPNYHLLLRQIFDDFPS DLGMRGIYARLCRVNTFDEGTKKVWLDRSMGKLCMSISAKGLSITGIDDRRYWNHIPTEESRFSSVAYLQQIWWFEVDGE VEFPFPPGTYSLFFRLHLGRASKRFGRRVCNTEHVHGWDVKPARFQLWTSDGQYVTSQCFLKGPGKWRYYHAGDFVVEDG NASTKIKFSMTQIDCTHTKGGLCLDSVLVYPSEFRKVKAFLNNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 279 | 279 | 6.7E-152 | – | |
| PANTHER | 1 | 279 | 279 | 6.7E-152 | – | |
| SUPERFAMILY | 10 | 94 | 85 | 9.59E-8 | ||
| Pfam | 113 | 271 | 159 | 1.0E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0220500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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