Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0222900 |
Transcript ID | LotjaGi4g1v0222900.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Fbd-associated f-box protein; TAIR: AT3G58860.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860; TrEMBL-Plants: tr|V7CDT3|V7CDT3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0222900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:52788232..52791024) extracted from Lotus japonicus Gifu genome v1.2.
CCCGGACTGAAGCTAGTTTATATAAAAACCACCACCTCAAAGGGAGCATCTTCCGGATCTGTACATGGTAAAAGGTTTCC TTTTATGTGAACCACAAGCAAGGACTCCAAAGAGAAACAGGTTCTTATTAGTTACTAAGATCAGTTTGTATATTCGCATT AGAAAAGTAATCTCAATCATAATATAAATCTCATTCACAATCACAAACTACATGAAAAGATAGTAAGGAGTAAAGAGGTA ACAATAATTCAAAGCCTTTGTTCCATTTACATTATTTTTGTTTTTACATTGGTTTTGTAATATGATCACATTTTGACAAA ATTTAAAGAGGTTTCATTTGATTATGATCTTCCAAGTTTCTTCCTCCAGTAAATGTTCAATGAATTTTTCTTTTCCTTCC ACATTAGTGAATTCATATACTCCATTTTCTACCTGATTTTCCATTCTCTGCCTTTTTTATCAAATATTCTTTACAATTCT AACTATTCATTATCCTTATTGATCTTGATGATCCATAAATTTTGGTCAAATTTAGGCCAGGGTTGATCATGCAGGATGCA ATTAACTGGGATCATAAACAGAAGAGAGCAAAATCTAACAATGAGAAAAACTGTGAAGATCTCATCAACCAATTGCCAAA TGGAATTCCTGGAGCAATTTTATCCAAATTGCCAATAAATGAAGCTGCAAAGACCAGCATCCTCTCAAGGAAATGGAGAT ACATGTGGACCTTTTATTCAGGGACCTTAGAATTTGATGGTTCACCAGTTATGAAAGACATGAAAAAAGACCTTAAGAGG GTTAGAGGAAGGCACTTACAAATGGCAATGGAGACCATGTTTGATGCTGAGAGGCAAACATACATAAATTGGACTAATGA ATTGTTGAGTTCACTTAAAAGTCCAACTCTACAAGGATTGAAGTTTTGGTTTCATGTGGGCAAAGGGTATAATGTTGACA AATGGGTTCAGTTTGCCATTCAAAAGAAGGTTCAAAAGCTTGAGTTGTATTTTGGGCAGGCATTTGAATATGTTCTTCCA CTGCAAATGTTTAAACTTGCAGGTTTTAATTCCTTGCGTGTCTTGCGTCTGAGATCCGTTGCTGTGACGAAAGAGATGCT CGAGTATTTGCTGTGTTGTTGCCCGCTACTTGAAACGCTGAGCTTGATTTCCTCAGAAGTTCCAGAAACCATGAAGGTTA TGTTATGAACCAATTATTTCAAAAGCTTAAGCCGTAGTCGGGTAAAGACACGTGAATGATTTTATATTATATTTAATTTC TAACAGGTTATAGATCAATCACTCAAGCTGAAGTGCCTGGAATTGGTAAAATGTTGGAACCCTGCAAGCCTTGAGATTTT TGCTGAGAATTTAGTGTCATTCAAATACTTTGGACCCTGTTTGGACATAAAATTTAAGAGTGTTCCAAGACTTGAGGAAG CAACATTTAGAGGAGCCTTAGAGACATTCGTTAGACTAAGCTTTCTCCCACAAATAAAAATGCTTAAATTGGATATTACA GAAAACGCACCTGAAGAGGTAGGCTTTTTCATCCTTTTCATTTCCTTTCTTTATGCTTGCTTTCCTTATTAACAGAAGTG ACTTCATTTTTTACTGTCTTAATTTTAGATTTACTGGTTACATCAACTTCCTGACTTAAACAATCTCAAGCATTTGGAGT TGGTTGTGTGTATTGATGATGACAGCACACTTAGTGATTGTGTTCTGCTACTGAAGGCAATGCCTTCATTATGGAGGTTC ACACTCAAGGTGAATACCCTAGTGCTTATGGCCTTCTTTTCATGGATTGAATCAAGAGTGTTGACTTTGATTTAGATACT TATGGTTTTAGATGTTAATTATAAGGGCAAAGCACACAAATCTCACTATTATATGATGTCAAAGTAATGGAGCATCCAAA TCCCCTTTCTCCAAATTTTGTGTCTTATCAATAAAAATCACATGTCAATTAAAAATCACTATGTAAACTTAGGATTGAAA TCTTCTATTAAATAGTGTCTCATTTTTCGTCTCACCAATAAAATTTTAACACTCATTAATACCACTATAAGTTTGTAATT GTCTCACTCATATCTCTTTTAACTTAGAGAGCGAATTGAAACACCATTTGAGGACAGAAAATCTTGATTCTTAAATTTGC AACTGATGCCCGACATGTATTTGTTAATTGACATGACAAGAATTTTTAGTGGGATAGAAAATGGAGACATCATTTGAAAA TAGAAGATCTTACCTCCTAAGTTCTACCACCTCACTGCCGGGTGTAAGGTGGTGTGATTCTTGATGTTGTGCATCAAGTA TCTTTTATACTATAAAGCTAGGATAGTTGAGTCTGAATATGATTTTCTTACATTTTGCAGATGCAAAATACAAAACCCAC TTTCAGAACAGAACGCAAATTAACTGTAGAATCCGAGTACAGCATTAAGGAGTTAGAGTTGGTTGGGTTTTGTGGAGCAG GGTGTGAAGTTGAATTAGCTATGTTCTTGGTTCAGAGTTCAGTTGAACTCCAAAAGATAACTATTGATACAAGGTTACCA ACTGAACCGAAATTGAAGCACTTCCAAACTTGGCATCATGAGGAAAACAGAAAGCGTGCTCTAAAACTGCAGGAGAAAAT ACTACCTGGGGTTGAATTCGTTTGTCTTTGACTTGATATTGGAAATTTATTATTTTTATTTTGGAAAATGTGAGGATCCA ATTCTAATGTTTTTTTCTTTTGATAAATCTGAAATTGAATTTTAAAAAATAAGTGCATGCTTGGAAAGCTATC
CDS sequence (LotjaGi4g1v0222900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGATGCAATTAACTGGGATCATAAACAGAAGAGAGCAAAATCTAACAATGAGAAAAACTGTGAAGATCTCATCAA CCAATTGCCAAATGGAATTCCTGGAGCAATTTTATCCAAATTGCCAATAAATGAAGCTGCAAAGACCAGCATCCTCTCAA GGAAATGGAGATACATGTGGACCTTTTATTCAGGGACCTTAGAATTTGATGGTTCACCAGTTATGAAAGACATGAAAAAA GACCTTAAGAGGGTTAGAGGAAGGCACTTACAAATGGCAATGGAGACCATGTTTGATGCTGAGAGGCAAACATACATAAA TTGGACTAATGAATTGTTGAGTTCACTTAAAAGTCCAACTCTACAAGGATTGAAGTTTTGGTTTCATGTGGGCAAAGGGT ATAATGTTGACAAATGGGTTCAGTTTGCCATTCAAAAGAAGGTTCAAAAGCTTGAGTTGTATTTTGGGCAGGCATTTGAA TATGTTCTTCCACTGCAAATGTTTAAACTTGCAGGTTTTAATTCCTTGCGTGTCTTGCGTCTGAGATCCGTTGCTGTGAC GAAAGAGATGCTCGAGTATTTGCTGTGTTGTTGCCCGCTACTTGAAACGCTGAGCTTGATTTCCTCAGAAGTTCCAGAAA CCATGAAGGTTATAGATCAATCACTCAAGCTGAAGTGCCTGGAATTGGTAAAATGTTGGAACCCTGCAAGCCTTGAGATT TTTGCTGAGAATTTAGTGTCATTCAAATACTTTGGACCCTGTTTGGACATAAAATTTAAGAGTGTTCCAAGACTTGAGGA AGCAACATTTAGAGGAGCCTTAGAGACATTCGTTAGACTAAGCTTTCTCCCACAAATAAAAATGCTTAAATTGGATATTA CAGAAAACGCACCTGAAGAGATTTACTGGTTACATCAACTTCCTGACTTAAACAATCTCAAGCATTTGGAGTTGGTTGTG TGTATTGATGATGACAGCACACTTAGTGATTGTGTTCTGCTACTGAAGGCAATGCCTTCATTATGGAGGTTCACACTCAA GATGCAAAATACAAAACCCACTTTCAGAACAGAACGCAAATTAACTGTAGAATCCGAGTACAGCATTAAGGAGTTAGAGT TGGTTGGGTTTTGTGGAGCAGGGTGTGAAGTTGAATTAGCTATGTTCTTGGTTCAGAGTTCAGTTGAACTCCAAAAGATA ACTATTGATACAAGGTTACCAACTGAACCGAAATTGAAGCACTTCCAAACTTGGCATCATGAGGAAAACAGAAAGCGTGC TCTAAAACTGCAGGAGAAAATACTACCTGGGGTTGAATTCGTTTGTCTTTGA
Protein sequence (LotjaGi4g1v0222900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQDAINWDHKQKRAKSNNEKNCEDLINQLPNGIPGAILSKLPINEAAKTSILSRKWRYMWTFYSGTLEFDGSPVMKDMKK DLKRVRGRHLQMAMETMFDAERQTYINWTNELLSSLKSPTLQGLKFWFHVGKGYNVDKWVQFAIQKKVQKLELYFGQAFE YVLPLQMFKLAGFNSLRVLRLRSVAVTKEMLEYLLCCCPLLETLSLISSEVPETMKVIDQSLKLKCLELVKCWNPASLEI FAENLVSFKYFGPCLDIKFKSVPRLEEATFRGALETFVRLSFLPQIKMLKLDITENAPEEIYWLHQLPDLNNLKHLELVV CIDDDSTLSDCVLLLKAMPSLWRFTLKMQNTKPTFRTERKLTVESEYSIKELELVGFCGAGCEVELAMFLVQSSVELQKI TIDTRLPTEPKLKHFQTWHHEENRKRALKLQEKILPGVEFVCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 21 | 441 | 421 | 4.0E-65 | – | |
PANTHER | 21 | 441 | 421 | 4.0E-65 | – | |
SUPERFAMILY | 23 | 62 | 40 | 8.11E-7 | ||
Gene3D | 24 | 370 | 347 | 4.2E-23 | ||
SUPERFAMILY | 165 | 351 | 187 | 1.49E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0222900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…