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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0222900 |
| Transcript ID | LotjaGi4g1v0222900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fbd-associated f-box protein; TAIR: AT3G58860.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860; TrEMBL-Plants: tr|V7CDT3|V7CDT3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0222900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:52788292..52791015) extracted from Lotus japonicus Gifu genome v1.2.
GTACATGGTAAAAGGTTTCCTTTTATGTGAACCACAAGCAAGGACTCCAAAGAGAAACAGGTTCTTATTAGTTACTAAGA TCAGTTTGTATATTCGCATTAGAAAAGTAATCTCAATCATAATATAAATCTCATTCACAATCACAAACTACATGAAAAGA TAGTAAGGAGTAAAGAGGTAACAATAATTCAAAGCCTTTGTTCCATTTACATTATTTTTGTTTTTACATTGGTTTTGTAA TATGATCACATTTTGACAAAATTTAAAGAGGTTTCATTTGATTATGATCTTCCAAGTTTCTTCCTCCAGTAAATGTTCAA TGAATTTTTCTTTTCCTTCCACATTAGTGAATTCATATACTCCATTTTCTACCTGATTTTCCATTCTCTGCCTTTTTTAT CAAATATTCTTTACAATTCTAACTATTCATTATCCTTATTGATCTTGATGATCCATAAATTTTGGTCAAATTTAGGCCAG GGTTGATCATGCAGGATGCAATTAACTGGGATCATAAACAGAAGAGAGCAAAATCTAACAATGAGAAAAACTGTGAAGAT CTCATCAACCAATTGCCAAATGGAATTCCTGGAGCAATTTTATCCAAATTGCCAATAAATGAAGCTGCAAAGACCAGCAT CCTCTCAAGGAAATGGAGATACATGTGGACCTTTTATTCAGGGACCTTAGAATTTGATGGTTCACCAGTTATGAAAGACA TGAAAAAAGACCTTAAGAGGGTTAGAGGAAGGCACTTACAAATGGCAATGGAGACCATGTTTGATGCTGAGAGGCAAACA TACATAAATTGGACTAATGAATTGTTGAGTTCACTTAAAAGTCCAACTCTACAAGGATTGAAGTTTTGGTTTCATGTGGG CAAAGGGTATAATGTTGACAAATGGGTTCAGTTTGCCATTCAAAAGAAGGTTCAAAAGCTTGAGTTGTATTTTGGGCAGG CATTTGAATATGTTCTTCCACTGCAAATGTTTAAACTTGCAGGTTTTAATTCCTTGCGTGTCTTGCGTCTGAGATCCGTT GCTGTGACGAAAGAGATGCTCGAGTATTTGCTGTGTTGTTGCCCGCTACTTGAAACGCTGAGCTTGATTTCCTCAGAAGT TCCAGAAACCATGAAGGTTATGTTATGAACCAATTATTTCAAAAGCTTAAGCCGTAGTCGGGTAAAGACACGTGAATGAT TTTATATTATATTTAATTTCTAACAGGTTATAGATCAATCACTCAAGCTGAAGTGCCTGGAATTGGTAAAATGTTGGAAC CCTGCAAGCCTTGAGATTTTTGCTGAGAATTTAGTGTCATTCAAATACTTTGGACCCTGTTTGGACATAAAATTTAAGAG TGTTCCAAGACTTGAGGAAGCAACATTTAGAGGAGCCTTAGAGACATTCGTTAGACTAAGCTTTCTCCCACAAATAAAAA TGCTTAAATTGGATATTACAGAAAACGCACCTGAAGAGGTAGGCTTTTTCATCCTTTTCATTTCCTTTCTTTATGCTTGC TTTCCTTATTAACAGAAGTGACTTCATTTTTTACTGTCTTAATTTTAGATTTACTGGTTACATCAACTTCCTGACTTAAA CAATCTCAAGCATTTGGAGTTGGTTGTGTGTATTGATGATGACAGCACACTTAGTGATTGTGTTCTGCTACTGAAGGCAA TGCCTTCATTATGGAGGTTCACACTCAAGGTGAATACCCTAGTGCTTATGGCCTTCTTTTCATGGATTGAATCAAGAGTG TTGACTTTGATTTAGATACTTATGGTTTTAGATGTTAATTATAAGGGCAAAGCACACAAATCTCACTATTATATGATGTC AAAGTAATGGAGCATCCAAATCCCCTTTCTCCAAATTTTGTGTCTTATCAATAAAAATCACATGTCAATTAAAAATCACT ATGTAAACTTAGGATTGAAATCTTCTATTAAATAGTGTCTCATTTTTCGTCTCACCAATAAAATTTTAACACTCATTAAT ACCACTATAAGTTTGTAATTGTCTCACTCATATCTCTTTTAACTTAGAGAGCGAATTGAAACACCATTTGAGGACAGAAA ATCTTGATTCTTAAATTTGCAACTGATGCCCGACATGTATTTGTTAATTGACATGACAAGAATTTTTAGTGGGATAGAAA ATGGAGACATCATTTGAAAATAGAAGATCTTACCTCCTAAGTTCTACCACCTCACTGCCGGGTGTAAGGTGGTGTGATTC TTGATGTTGTGCATCAAGTATCTTTTATACTATAAAGCTAGGATAGTTGAGTCTGAATATGATTTTCTTACATTTTGCAG ATGCAAAATACAAAACCCACTTTCAGAACAGAACGCAAATTAACTGTAGAATCCGAGTACAGCATTAAGGAGTTAGAGTT GGTTGGGTTTTGTGGAGCAGGGTGTGAAGTTGAATTAGCTATGTTCTTGGTTCAGAGTTCAGTTGAACTCCAAAAGATAA CTATTGATACAAGGTTACCAACTGAACCGAAATTGAAGCACTTCCAAACTTGGCATCATGAGGAAAACAGAAAGCGTGCT CTAAAACTGCAGGAGAAAATACTACCTGGGGTTGAATTCGTTTGTCTTTGACTTGATATTGGAAATTTATTATTTTTATT TTGGAAAATGTGAGGATCCAATTCTAATGTTTTTTTCTTTTGATAAATCTGAAATTGAATTTTAAAAAATAAGTGCATGC TTGG
CDS sequence (LotjaGi4g1v0222900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAAAAGGTTTCCTTTTATGTGAACCACAAGCAAGGACTCCAAAGAGAAACAGGCCAGGGTTGATCATGCAGGATGC AATTAACTGGGATCATAAACAGAAGAGAGCAAAATCTAACAATGAGAAAAACTGTGAAGATCTCATCAACCAATTGCCAA ATGGAATTCCTGGAGCAATTTTATCCAAATTGCCAATAAATGAAGCTGCAAAGACCAGCATCCTCTCAAGGAAATGGAGA TACATGTGGACCTTTTATTCAGGGACCTTAGAATTTGATGGTTCACCAGTTATGAAAGACATGAAAAAAGACCTTAAGAG GGTTAGAGGAAGGCACTTACAAATGGCAATGGAGACCATGTTTGATGCTGAGAGGCAAACATACATAAATTGGACTAATG AATTGTTGAGTTCACTTAAAAGTCCAACTCTACAAGGATTGAAGTTTTGGTTTCATGTGGGCAAAGGGTATAATGTTGAC AAATGGGTTCAGTTTGCCATTCAAAAGAAGGTTCAAAAGCTTGAGTTGTATTTTGGGCAGGCATTTGAATATGTTCTTCC ACTGCAAATGTTTAAACTTGCAGGTTTTAATTCCTTGCGTGTCTTGCGTCTGAGATCCGTTGCTGTGACGAAAGAGATGC TCGAGTATTTGCTGTGTTGTTGCCCGCTACTTGAAACGCTGAGCTTGATTTCCTCAGAAGTTCCAGAAACCATGAAGGTT ATAGATCAATCACTCAAGCTGAAGTGCCTGGAATTGGTAAAATGTTGGAACCCTGCAAGCCTTGAGATTTTTGCTGAGAA TTTAGTGTCATTCAAATACTTTGGACCCTGTTTGGACATAAAATTTAAGAGTGTTCCAAGACTTGAGGAAGCAACATTTA GAGGAGCCTTAGAGACATTCGTTAGACTAAGCTTTCTCCCACAAATAAAAATGCTTAAATTGGATATTACAGAAAACGCA CCTGAAGAGATTTACTGGTTACATCAACTTCCTGACTTAAACAATCTCAAGCATTTGGAGTTGGTTGTGTGTATTGATGA TGACAGCACACTTAGTGATTGTGTTCTGCTACTGAAGGCAATGCCTTCATTATGGAGGTTCACACTCAAGATGCAAAATA CAAAACCCACTTTCAGAACAGAACGCAAATTAACTGTAGAATCCGAGTACAGCATTAAGGAGTTAGAGTTGGTTGGGTTT TGTGGAGCAGGGTGTGAAGTTGAATTAGCTATGTTCTTGGTTCAGAGTTCAGTTGAACTCCAAAAGATAACTATTGATAC AAGGTTACCAACTGAACCGAAATTGAAGCACTTCCAAACTTGGCATCATGAGGAAAACAGAAAGCGTGCTCTAAAACTGC AGGAGAAAATACTACCTGGGGTTGAATTCGTTTGTCTTTGA
Protein sequence (LotjaGi4g1v0222900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKGFLLCEPQARTPKRNRPGLIMQDAINWDHKQKRAKSNNEKNCEDLINQLPNGIPGAILSKLPINEAAKTSILSRKWR YMWTFYSGTLEFDGSPVMKDMKKDLKRVRGRHLQMAMETMFDAERQTYINWTNELLSSLKSPTLQGLKFWFHVGKGYNVD KWVQFAIQKKVQKLELYFGQAFEYVLPLQMFKLAGFNSLRVLRLRSVAVTKEMLEYLLCCCPLLETLSLISSEVPETMKV IDQSLKLKCLELVKCWNPASLEIFAENLVSFKYFGPCLDIKFKSVPRLEEATFRGALETFVRLSFLPQIKMLKLDITENA PEEIYWLHQLPDLNNLKHLELVVCIDDDSTLSDCVLLLKAMPSLWRFTLKMQNTKPTFRTERKLTVESEYSIKELELVGF CGAGCEVELAMFLVQSSVELQKITIDTRLPTEPKLKHFQTWHHEENRKRALKLQEKILPGVEFVCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 44 | 464 | 421 | 4.9E-65 | – | |
| PANTHER | 44 | 464 | 421 | 4.9E-65 | – | |
| SUPERFAMILY | 46 | 85 | 40 | 8.76E-7 | ||
| Gene3D | 47 | 392 | 346 | 5.2E-23 | ||
| SUPERFAMILY | 188 | 374 | 187 | 1.73E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0222900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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