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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0226700 |
| Transcript ID | LotjaGi4g1v0226700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT5G50250.1 chloroplast RNA-binding protein 31B; Swiss-Prot: sp|Q9FGS0|CP31B_ARATH RNA-binding protein CP31B, chloroplastic; TrEMBL-Plants: tr|I3T4E2|I3T4E2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0226700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53603990..53607798) extracted from Lotus japonicus Gifu genome v1.2.
CTGGGAGCGGGATGCAATTCTCCGAGTTCGTGATATGCTTCATTGGTGATGAAGAGTCAATTTGCGTCTTGTTCAAAGAG ATGGTAACATAGTGGCCGATGCTTTGGCATACCAACCTTGTAAAGGTGGATTCTCTTACCGTGTGTGGCGGCTACCACCT TGTAGTATTCTGGTTGTTAATTTTCCAAATGTAACCAAAAAAACACTAACAGTGTACATTAAGTTAATTGCACATCATTT TTTTGGGGGGTCAAATTGCACATCATTTTTTTGGGGGGTCAAATTGCACATCATTTTTTTTTTTGTTTGCACCCCTTTCA TTTATATTTGTGGGTGAGAAGTCTGTATTTATGTGTTTTTGGACAACTTGGGTGAGTGGTCTCATACAAGCCCATGTTTC AAAACATGGAAAATTAAAAAGCCCATTAAAAAACCATAATAAAAAAATAAAGAAAAGTATATCTTTTGTCAAAAAAAAAA GTATATCTATAATATGATAATATCTGTCACCATTTCCAAAACCCTTTCAATCTTATTCCTACCCCCTTATCCACAACCAC TGTGTTGTTGTTGTTGTTGTTGTTGTGTACATTGTTCTAAACCCTCTTCTTCCATTTCTTCTCCCTCACCTTCTTCAATT ATCCATGTCTATCACAACCATGCCTGCGTTCAAGTTCCTCACAGTGGCAGAATCATGCCTACTCTCTCAACCCTCACTCT TCTCCTCCAAAACCAGATACCCAATTCTCTCAAATTCTCTAAAGACCCTCAAGCTTCAACTCCCATGCTCAAATTCTTCA CCTTTTTCACCCTCCCTCCTCTCAACAACCCACCGTTCTCCTCTCCTCACATTTGTAGCCCAGACTTCAGATTGGGCTCA GCAAGAAGAAGAGGGTGGAGCCGCATGGGAGAACGAGGGCGAACCCACATGGGCAAATGAAGATAGTGATGAAACTGAAG GTGGTGAAGAAGTGGTGGCATCTGCTGAACCTTCTGAAGATTTGAAGATCTTTGTTGGGAACTTGCCATGGGATGTTGAG AGTGAGAATTTGGCCATGCTTTTTGAGGAAGCTGGGTCGGTGGAGTTTGCTGAGGTTAGTTCTTAGTTCTTACCCTTTTG GATTTCAATTCATATTTGAGTTTATTCGTGTACTGGGGTTATATTACAATTTACAAGTTTTGGACTTTCAATATCTGAGG TGGTTTGAATGTTGCTTTTGTATTGTGATTTCAGGTTATTTATAATAAGGCCACTAACCAAAGTCGTGGGTTTGGATTTG TTATCATGAGTACGGCTGAAGATCTTGAGAAGGCTTTGAACAAGTTCAGTGGCTATGTAAGTTGGCTCTTCATATTTTGT AGTATTGTGCTGTTAAGTAGAAAGTTATAATTATGATCTATAAAACATAGACATGGGCACCTGAAGACCAACATATCGAC CCGTTCTAATTATATAACACCAGGACACTGCATATATATGTCTGAGAGAAGTTAATCTTAACCATCAATGCATGATTGTA TGGTCAAGTTTAGTTCTTCTCACTTGATATGCCATAAGGGTAAACATAGGAAGAATCGGCATTCCCAATAAGTTCACTTT CAGTAAGTTATTCCATAACAAAATGCAAGTTTTCAACAAGAGTTGTGTCCTTCAAATGTCATACCTTATCTAAACTGTCT GCTTTGTAGATTATGATAAAATGTTGTATTGGAAATAATCTGTTCGAAAATAAAATAGGAAAACTTAAACCGATAAGTGG GTGACCGGATGATATATTTCTAATTCTAAATGCTAATTGCTTAGTGTAAAAGTGTGAACACTGAACAGATATGTACATAG GTGTCAGATTATTAACACTGAGTTGCATTCTAGTTGTGCATTACAAACATCACTTCTGCCCCCAACTGAAAGAAAACATG GCAATTTTGTCTCACACAAACTACAAAGCTAAAGAAATCAATCATTTAGTTTTTAGTTTAACCAGCTGAGATAATGTCCC TGTGAACATTTTTAAGTAGAAAACTTCTGCTTCTTTGGACCTGCAAAACTTATTTTTGATGTATCTCATTTCACCCATTA AGAAGAATACATGCCACTTGTTTGAGGATTGCACAACTTATAGCTACCTCTAGATTGATGTTATACTGTATATAGATAAG AAGGGGAAATTATTATTTAACATTATGAGGTTGGTCTATGACTATGGCTCACTACACTTCCTGGCTGCTGTAAATGCTAT CCCTTTGTTGCTCATTGTTCTAAGTTCTAATGGTGCTTGGCTCTCATTATGGTACAATTCCTTGAGATTAATTGTTGACG AGGTTGGTGAAAATGTATAGACTAAAACTTGTATTTGGTGGTTTTTGCCTCATGAGTATGACATTTGAATACCTTCTTAC TTAATTATCTACCTGCGTCTTAATATCCGGACCTGCATGTATTTATATTTGGAATATCATCTTTGAAATTTTAAACTTAT ATTTTCACAGAACAAAATATAACTGAATCTTTAGATTTTGATGTTCTTATCACTGTGTTTGAGTTTGGAAATTTTTCTGC TTTTACAAAGGTGCTTCGATTTTTCTTTTTCCCAGTTCTAATGTGTCCTACATTTGGCATATGGTTTTAAATTTTCTGCA CTTGCAGTGTAAATAATTTTACTCATGCATCCAATGACATTTCTCCATTTTCCATTTTAAATATTTAAAAATTCAAATTT AATTATGATACGGCAAATTGATGGATCCTAATCGGATGATTGTCAGTGCATAGTCCTTTACAGGAAGAATCACATGTATT GTTAATAATTCTTCTCTAATTGATTCTATCATGGCCTATTGAGTTATTTTGGATCTTATCCATGTTTTCTGTTACAGGAA TTGGATGGAAGAGTGTTGACTGTTAATAAGGCTACTCCAAAGGAAGCACGGCCTGAACGCCCGCCACGTACCTTTGGTTC TGGTTCTGGTTCCCGTGATTCTGGTTTAAGTGTCTATGTTGGTAACTTACCATGGAGTGTTGATACTGCTCGCCTGGAAG AAATTTTCAGGGAACATGGTAATGTTGAGAATGCTCGGATAGTCATGGACAGAGAGACGGGTCGATCACGTGGTTTTGGC TTTGTCACAATGTCCAGTGAAGCTGATATTAATGGTGCCATTGCTGCTCTTGATGGTCAGGTATTACACCAGTACTTTCT TACTTGATCATTGGTAACATGTATGATGCAGCAAGATTGCTTTAGGTTAATGTTTTTGTGGGCAATGTTTTAAACAAACA GCTTATGAAGTTGCCTTTTCTTTGGGATATTTTATTTAAATTTGAATCATTATAAGAACTACTTCTGTAGTTAATTCTTT GTAATGAAAAATTGATTCTGCAGAGCTTGGATGGGAGAACAATCAGGGTGAGTGTTGCTGAGGGAAGGTCCGGCGGGCGT AGCTCCTTTTGAGTGGTAGCTCAAGTAATTCTCCATGTCCACTGGTTGAGTTCCTTTTTTTGTGTGGCTGAGGATATAGT GCCCCTTTTTCCATTTTAAATTTTCCTCTTTTAGCTGCTGGTGTGACATTAGATTTGCATATTTGTTATATTAGTTTGGT GACCTGGTAAAATTTATGTAAGTTATAATTCCAGCTCTAGGGGTTTTGAAGAAAGTCTTCTTGATGTTTTCCCTTTTTTT CTCACCATTTTGTTTGCTGTTGATGAACGAAATAGATAAATTTGTCTTTTAGCATATATCTTCCATTAAATTGTCTGGCA ACTTTTAACTAAGCTCTTATTAATATGCTATTATTTTTCCCCAGCACAA
CDS sequence (LotjaGi4g1v0226700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTATCACAACCATGCCTGCGTTCAAGTTCCTCACAGTGGCAGAATCATGCCTACTCTCTCAACCCTCACTCTTCTC CTCCAAAACCAGATACCCAATTCTCTCAAATTCTCTAAAGACCCTCAAGCTTCAACTCCCATGCTCAAATTCTTCACCTT TTTCACCCTCCCTCCTCTCAACAACCCACCGTTCTCCTCTCCTCACATTTGTAGCCCAGACTTCAGATTGGGCTCAGCAA GAAGAAGAGGGTGGAGCCGCATGGGAGAACGAGGGCGAACCCACATGGGCAAATGAAGATAGTGATGAAACTGAAGGTGG TGAAGAAGTGGTGGCATCTGCTGAACCTTCTGAAGATTTGAAGATCTTTGTTGGGAACTTGCCATGGGATGTTGAGAGTG AGAATTTGGCCATGCTTTTTGAGGAAGCTGGGTCGGTGGAGTTTGCTGAGGTTATTTATAATAAGGCCACTAACCAAAGT CGTGGGTTTGGATTTGTTATCATGAGTACGGCTGAAGATCTTGAGAAGGCTTTGAACAAGTTCAGTGGCTATGAATTGGA TGGAAGAGTGTTGACTGTTAATAAGGCTACTCCAAAGGAAGCACGGCCTGAACGCCCGCCACGTACCTTTGGTTCTGGTT CTGGTTCCCGTGATTCTGGTTTAAGTGTCTATGTTGGTAACTTACCATGGAGTGTTGATACTGCTCGCCTGGAAGAAATT TTCAGGGAACATGGTAATGTTGAGAATGCTCGGATAGTCATGGACAGAGAGACGGGTCGATCACGTGGTTTTGGCTTTGT CACAATGTCCAGTGAAGCTGATATTAATGGTGCCATTGCTGCTCTTGATGGTCAGAGCTTGGATGGGAGAACAATCAGGG TGAGTGTTGCTGAGGGAAGGTCCGGCGGGCGTAGCTCCTTTTGA
Protein sequence (LotjaGi4g1v0226700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSITTMPAFKFLTVAESCLLSQPSLFSSKTRYPILSNSLKTLKLQLPCSNSSPFSPSLLSTTHRSPLLTFVAQTSDWAQQ EEEGGAAWENEGEPTWANEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQS RGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFGSGSGSRDSGLSVYVGNLPWSVDTARLEEI FREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRSGGRSSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 72 | 206 | 135 | 6.4E-27 | ||
| MobiDBLite | 79 | 115 | 37 | - | – | |
| MobiDBLite | 95 | 109 | 15 | - | – | |
| PANTHER | 109 | 301 | 193 | 5.4E-79 | – | |
| PANTHER | 109 | 301 | 193 | 5.4E-79 | – | |
| SUPERFAMILY | 113 | 220 | 108 | 2.55E-29 | ||
| ProSiteProfiles | 120 | 198 | 79 | 18.24 | ||
| SMART | 121 | 194 | 74 | 8.4E-25 | ||
| CDD | 121 | 198 | 78 | 3.22918E-30 | – | |
| Pfam | 122 | 191 | 70 | 3.2E-18 | ||
| MobiDBLite | 197 | 218 | 22 | - | – | |
| Gene3D | 207 | 306 | 100 | 8.4E-29 | ||
| SUPERFAMILY | 220 | 304 | 85 | 1.61E-28 | ||
| ProSiteProfiles | 221 | 299 | 79 | 19.945 | ||
| SMART | 222 | 295 | 74 | 6.5E-27 | ||
| Pfam | 223 | 293 | 71 | 5.2E-21 | ||
| CDD | 224 | 298 | 75 | 8.55389E-34 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0226700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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