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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0230400 |
| Transcript ID | LotjaGi4g1v0230400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Raffinose synthase family protein; TAIR: AT5G40390.1 Raffinose synthase family protein; Swiss-Prot: sp|Q8VWN6|RFS_PEA Galactinol--sucrose galactosyltransferase; TrEMBL-Plants: tr|A0A072UPP7|A0A072UPP7_MEDTR Raffinose synthase or seed inhibition protein; Found in the gene: LotjaGi4g1v0230400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54096193..54102223) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAAGATGTGATAAGAAAAGTGAAATATTTTATGTGAATTGAATTTGAAGAAAGAACGTAGAAAAATCACCAGTCTAA TCTTCTATTTAATTGTACAGCTCCATCTCTATTATCAACTCGCCGCTGATTGACCAAATGCCCAAAAACCTCCCTTATTG AAGATCAGTATTCTCCATGGCGCCAAGCTTAACCACCACCCTCAAAGAAACGGGACTCAACCATGCTAACAACTCACCTC TCTCCATAAAACTTGAAGCCTCAACGTTCCTTGCAAACAACCACCCTATCCTCACTCAAGTCCCACCAAACATAACCACC TGCACCACTCCCCACGATTCTCCCTCAAACAACACCATCACCGCCGGCTGCTTCGTCGGGTTCAATACCGACGAGCCGCG AAGCCGGCATGTGGTCTCCATGGGCAAGCTCAAGGGAATCAGGTTCAGCAGCATATTCCGTTTCAAGCTCTGGTGGAGCA CCCACTGGTCCGGAACCAACGGCCGCGACGTGGAGCACGAAACCCAATTCATGATCTTGGAAAATGACACCGGCAAGGGC CGTCCCTACGTCCTCCTCTTGCCACTCATCGAAGGAGCTTTCAGAGCTTCTCTGCAACCAGGTTCCGATGATTACGTGGA CATTTGCATGGAAAGTGGCTCCACGCGCGTCTCTGAATCAACCTTCAGAAGCGCCCTGTATATTCACCTTCACCATGACC CTTATGAGTTAATGAACGAAGCAATGAAAGTGATCAGAGTTCATCTTGGAACTTTCCGGCTTCTAGAAGAGAAAACTCCA CCGGCTATTGTGGACAAGTTCGGGTGGTGCACCTGGGATGCCTTCTACCTCAAGGTAGTAAAATATTTCAGTTATATACT CTTTCATTCGCAATCTACAATAGATGCTAAAAAGAGATTAATTTAATGAACCTATTAAAATTAATTTGCAGAAAATCTAG AGAATGTGAACTAAATATGTCCTGTTCCACGATCCAATTTTATACCATTTTAAACTTGAAGCGGTTTTTATGAGGGTAGA CTTGAGTTTTGATATATTCACACTTTACCTTATCTTCTATTTTATTTTTTTAATTTTTCTTTTAATTTTTCTACATTTTT ATCACCTCACATATCATCATGTCACTTCAGGTGTACATAACTAACATAAGATAACTTTTTCTAGACCTCCTTTTATATTA CATTTCTCATTTGTCTATCTATTGTCATCTCTTTCTAATAGGTACACCCTGATGGAGTGCGGCAAGGTGTGAAGGGCCTA GTGGAAGGTGGGTGCCCTCCGGGCTTTGTGATCATCGATGACGGTTGGCAAACCTTTTATCGCGATGACGAGCCGGTAAC GGAGGAGCACGGCGGGCTAAGCTTAGAATGCTCGGTGCCGGGTGAGCAGATGTTGGGGAGGCTAGTGAGTTTTGAAGAGA ATCGCAAGTTCAAGGGGTACGGCGGAGGAGGGATGGGTGGTTTTGTGAGGGAGCTGAAGGAGGAGTTTGGTGCGTTGGAG CATGTTTATGTGTGGCATGCGTTTTGTGGATACTGGGGTGGGATTAGGCCCGGCGTGAAAGGGATGCCGGAGGCGAAGGT GGTGGCGACGAAGCTCTCTCCAGGGGCGGAGATGATGATGACGGATTTGGCGGTGGTGAAGATTGTGGAGAATGGGGTCG GACTTGTGGCACCGGAAGAGGCACACATGTTGTACGAGGGACTTCACTCGCATTTGCAATCAGTGGGGATTGATGGGGTC AAGATTGACGTCACGCATGTAAGTCTTCGAGTTTATCCAATTCTATATGATACACATATCTATTTCAGCTTGATTATGTT GTTGAAAGTCAATTCAAAGCTTGCTTCAATTGAAAGGGAGAATTTACCACGGTTTAGTGTATATAGTTTGAATTTAATGG ATATACACTTTGAGGGGTAAACATCCAATTGAATTCCGCCAATCCAATTGAATTCCGCCAAATAAGTAAATATGTTTTTA TTTTAATTAAAATTAAAAATGAATGTAACTCTCCCTTTCACGTGGTAAACATTGATTGGATGTCAGTGTAAAACTATTTT ACACCGACGGTGCATATCCTTTAAACTCATATAGTTTTGTTATTTTTTTGGTACATCGGAAAGATAAATTGCACCCGCCA GGAATCGATCTCTGGACCTCCCCCAACCCAACCCATATGTCCCTAGCTCCTACCACTTAAGTTATCCTACAATGAGTTTA GTTTTAAATCTTAAGTGGACCTTAAAAAAAACGAGAATGGTTAAATTGGATGCTCATCAGTTTGTGTTTGGACTTAGAAA ATATCTCATTGTAAATGTAAGGGTCAGCAAACTAAGCAGATCATACTTATTAAGGTTCGATCTAATCATAATAATTTATT TCTATATTTTTTTATATATAAAAAGGATCATTCTACACATTCTCAATATAATGAAAATCCAACAAAACACAATTAAATTA TTTATTGAATAAAAAAACTTCAAGGAATATAGACTACCGAGACATTTAATTGATGTATTTTATTTATTGTCATTTTTCAA ATATTTTGTTTAGTAACTATATTAAGTCATGAAGAGTATTAAATTAATCGGGTGAGGAGCAAGAGAGGATAATTTGAGAG GAAAGACTTTTGTACGTCTTATAAAATGATGAAATTTTAAATCTTTATTTTGAGCTAGGAAATGACCTTATAAAGTTACA TGGTATTTTAAATTTTTTTTGATATATTTGTATTTGTATTGATTAATCTAATATCCTCTCAATACCCTTCAATTATGTAA CCAAAAAAAATACCCTTCAATTAAATCCCCCATTTAGAGATTTTCCCATGATTTTTTTTTGTCAAAGGTAAGCATATCAT TAATAACATGGGCCAGGCCCATAACCCAAAAGGGTAGTACAACTGGTTGGCAAAGCCAGAGATTTTCCCATGATAAATAT TTCTGTTTTGGCAACATGACAACATCTATAGCAAAGTCAAATATTTGTGAGGTGAGCTTGGGCTCTAACCTTTGGGCCGA GAGGCATAACATGAGGGATTCAGACTTTTTTTTATTTGAATGGATTAATCAAATAAATGTTTTTTCGGGACTGGGCATCT ACATGGAGCTGGCTTTGGGCCCAGAAAATATATAAAGCTGGCTATATTATGTTGTCTTTCACCGATGTTCTCACCTATTC GGAAAAATGACTTTTGCGGGGGTCGAGCTTGTGTTAACACTCTTACAAGGGTCTAACTTGGTTATTACTAGACCGACACT TTGTTGTTATTCAGGTTTTAATATTTTTTTTTTATGTTTTAGTCAAAGTATCCTCACAAACGATAACCATGAGATTAATC TTCCGCCACACAGTCAGCGCACTAAGCTGTAGGGGTTGACCAATGAACTTTTTCCATTCACAAGAGTTTGGAATGGAACC CCCAAACCAATTGCTTAAATGATGAAGTGTTGAACCACTTCGTCAACTCCCTTAGTTTTTCGTGTTTTAGTTTAGGAGAA TGATTGTGACACCCAAATTAAAATTAAAGAGGAAATAGATGTAATATAATGATGAGTAATGACTTAATGTAATGATACAT AGACATACACTTTTCATGAGACATCATTGAGACATATGACTTCATGATAGTTTTTAACCACCACAACACTTTTTAGCGGT TAAAAACCGTCATAAAATAATATGTCTAAAGAATGTCACAGTATATGTCTATCAATATTTTTTCGTATGACTTCCGAGAG AGGTGAAGAAAAAAATGAGCTGCATCTCAGATGTTAGTACTTTGATGTGTTTAAGAAGAGCTTCGGTAAATCACCCAAAG TACTTAGCCTTAGGTCGTTAGTGATATTTTAGCACTGTGACATGAGCTGAAATTTCTCAAAACAATGTCAAAATATTACT TGACCACCTAAATTAGGATGATTTAACTCCATATTTACTTAGTGTGATTTAGAAGAGTACCATTTAAAATTCTTGAGAAT CAGAAAGAGAGACACAGAGAGACAGATTCAGAAAATCAGATCAGAGTACTACTTATTTTGTTCTCGTGCAATTAAAAAAG AGTACTGATTACTATTTTATTAATTTTCATGTGACAGGTTCTAGAGATGGTCTCAGAGGAATATGGTGGTCGTGTTGAAC TTGCGAAAGCATACTACAAAGCACTCACTGATTCGGTGAGGAAGCATTTCAAAGGCCACGGTGTTATTTCCAGCATGCAA CAGTGCAATGATTTCATGTTCCTTGGCACAGAAACAATATCATTTGGACGAGTTGGTAAATCTTCAAACAATATATACAA GTGTTGTTTTGATCACATGAATAACTAACTTAGCATCTAACTGTGTAACTAACCAATAACCGAATAACTAACTCAATCTC CTTAGTCCTTACTAATTACAATGACTTGTGAGTGTCTAATACTGCTGTGACTGCAATCAGTGTTTATAGATTTATCCATT CATTCATGCAGGGGATGATTTTTGGTGCACTGACCCGGCCGGAGATCCAAACGGCACGTATTGGCTGCAAGGGTGTCACA TGGTGCACTGCGCCTACAACAGCTTGTGGATGGGAAACTTTGTCCACCCGGATTGGGATATGTTCCAATCTGATCATGCA TGCGCCGAATTCCATGCCGCTTCTCGTGCCATTTCTGGCGGACCGGTTTATGTAAGTGACTCTGTCGGGAGCCACAACTT CAAGTTGCTTAAGAAGCTGGTTCTGCCTGATGGCTCCATTTTGAGGTGCCAACATTATGCACTTCCCACCAGAGATTGCT TATTTGAAGACCCTTTACATGATGGCAAAACCATGCTTAAAATTTGGAACCTCAACAAAGTAAGATAATATAAGTCCTAT TTGTGCCTTGTCATATTATTGTTAGTAATTTGAATTTGTATTCCCTACAATTCATCAATTCACACAGTTAATGGATGTGA GCTGTTCGATCAAGACTGGACAACTCTTAAAGTTTATCTTTGCTAATCTTGATGAAATATATGAACTAATCTGGACTACA GAGAACTCAAATCCAATTTGCCAGTATTTGAATTTAGATTATGAGGTTTCATAAATTTTAAGTTTATCTTTGCTATCTGA TATTGTCGAAATATATGAGCCGATTTTGACTACACTAAAGTCTTAACCTTTAGTCTCATTTTTGTGTTTTTCTTTGCTAA TTGCAGTATAGTGGGGTTTTGGGTTTGTTCAATTGCCAAGGAGGAGGGTGGTGCCCTGAGACGCGGCGAAACAAGAGTGC CTCTGATTGCTCACATTCTGTGACATGCTTTGCAAGTCCTAAAGACATTGAATGGAGCAAAGGGAAAAACCCAATTTGCA CCAAAGGGGTAGAAGTCTTTGCTGTGTACATGTTTAAGGATGACAAGTTGATTTTCCTCAAGTACACAGAGTGTGAGCAA GTTTCACTTGAGCCTTTTAGTTTTGAGCTATTGACCGTTTCTCCTGTGGTTGTGCTGCCCAAAAATTCAATCCAATTTGC TCCCATTGGATTGGTTAACATGCTCAATTCTGGGGGATCAATTCTGTCAGTGGAATTTGATAAACAGGACAACTTGGTGA GGATTGGGGTGAAGGGACATGGAGAAATGAAGGTATTTGCATCAGAGAAGCCAGTCAGTTGTAAGATTGATGGAGAGCTT GTTGAATTTGATTATGGTGATAGCATGGTGAAGCTCCAAGTCCCATGGCCTGGTTCTTCAAGGTTGTCTGTGGTTGAGTA TTTATTCTAAACCTTGATTTTGTGTCAAGAAGACTCTTGTAGACACATGGTACTCCTATTCAACATTAGATTGTTGTAAA AAACTTTGTGACTGGTAGTATATGTAAATCCCTAAACAATTAAAAGTAAGTTGTTTGAGTCTAAGTATTGTCCATATAAA CACTCTGGTTATTGTCTTTGTATTGATACTAAGCTTCTTTCTTAGTTCTCATTGTATCTGGGTTCTAGCACCCCCGTGCT AGCAATGAACACAGTTTTGCTTATAAAAAAC
CDS sequence (LotjaGi4g1v0230400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCCAAGCTTAACCACCACCCTCAAAGAAACGGGACTCAACCATGCTAACAACTCACCTCTCTCCATAAAACTTGA AGCCTCAACGTTCCTTGCAAACAACCACCCTATCCTCACTCAAGTCCCACCAAACATAACCACCTGCACCACTCCCCACG ATTCTCCCTCAAACAACACCATCACCGCCGGCTGCTTCGTCGGGTTCAATACCGACGAGCCGCGAAGCCGGCATGTGGTC TCCATGGGCAAGCTCAAGGGAATCAGGTTCAGCAGCATATTCCGTTTCAAGCTCTGGTGGAGCACCCACTGGTCCGGAAC CAACGGCCGCGACGTGGAGCACGAAACCCAATTCATGATCTTGGAAAATGACACCGGCAAGGGCCGTCCCTACGTCCTCC TCTTGCCACTCATCGAAGGAGCTTTCAGAGCTTCTCTGCAACCAGGTTCCGATGATTACGTGGACATTTGCATGGAAAGT GGCTCCACGCGCGTCTCTGAATCAACCTTCAGAAGCGCCCTGTATATTCACCTTCACCATGACCCTTATGAGTTAATGAA CGAAGCAATGAAAGTGATCAGAGTTCATCTTGGAACTTTCCGGCTTCTAGAAGAGAAAACTCCACCGGCTATTGTGGACA AGTTCGGGTGGTGCACCTGGGATGCCTTCTACCTCAAGGTACACCCTGATGGAGTGCGGCAAGGTGTGAAGGGCCTAGTG GAAGGTGGGTGCCCTCCGGGCTTTGTGATCATCGATGACGGTTGGCAAACCTTTTATCGCGATGACGAGCCGGTAACGGA GGAGCACGGCGGGCTAAGCTTAGAATGCTCGGTGCCGGGTGAGCAGATGTTGGGGAGGCTAGTGAGTTTTGAAGAGAATC GCAAGTTCAAGGGGTACGGCGGAGGAGGGATGGGTGGTTTTGTGAGGGAGCTGAAGGAGGAGTTTGGTGCGTTGGAGCAT GTTTATGTGTGGCATGCGTTTTGTGGATACTGGGGTGGGATTAGGCCCGGCGTGAAAGGGATGCCGGAGGCGAAGGTGGT GGCGACGAAGCTCTCTCCAGGGGCGGAGATGATGATGACGGATTTGGCGGTGGTGAAGATTGTGGAGAATGGGGTCGGAC TTGTGGCACCGGAAGAGGCACACATGTTGTACGAGGGACTTCACTCGCATTTGCAATCAGTGGGGATTGATGGGGTCAAG ATTGACGTCACGCATGTTCTAGAGATGGTCTCAGAGGAATATGGTGGTCGTGTTGAACTTGCGAAAGCATACTACAAAGC ACTCACTGATTCGGTGAGGAAGCATTTCAAAGGCCACGGTGTTATTTCCAGCATGCAACAGTGCAATGATTTCATGTTCC TTGGCACAGAAACAATATCATTTGGACGAGTTGGGGATGATTTTTGGTGCACTGACCCGGCCGGAGATCCAAACGGCACG TATTGGCTGCAAGGGTGTCACATGGTGCACTGCGCCTACAACAGCTTGTGGATGGGAAACTTTGTCCACCCGGATTGGGA TATGTTCCAATCTGATCATGCATGCGCCGAATTCCATGCCGCTTCTCGTGCCATTTCTGGCGGACCGGTTTATGTAAGTG ACTCTGTCGGGAGCCACAACTTCAAGTTGCTTAAGAAGCTGGTTCTGCCTGATGGCTCCATTTTGAGGTGCCAACATTAT GCACTTCCCACCAGAGATTGCTTATTTGAAGACCCTTTACATGATGGCAAAACCATGCTTAAAATTTGGAACCTCAACAA ATATAGTGGGGTTTTGGGTTTGTTCAATTGCCAAGGAGGAGGGTGGTGCCCTGAGACGCGGCGAAACAAGAGTGCCTCTG ATTGCTCACATTCTGTGACATGCTTTGCAAGTCCTAAAGACATTGAATGGAGCAAAGGGAAAAACCCAATTTGCACCAAA GGGGTAGAAGTCTTTGCTGTGTACATGTTTAAGGATGACAAGTTGATTTTCCTCAAGTACACAGAGTGTGAGCAAGTTTC ACTTGAGCCTTTTAGTTTTGAGCTATTGACCGTTTCTCCTGTGGTTGTGCTGCCCAAAAATTCAATCCAATTTGCTCCCA TTGGATTGGTTAACATGCTCAATTCTGGGGGATCAATTCTGTCAGTGGAATTTGATAAACAGGACAACTTGGTGAGGATT GGGGTGAAGGGACATGGAGAAATGAAGGTATTTGCATCAGAGAAGCCAGTCAGTTGTAAGATTGATGGAGAGCTTGTTGA ATTTGATTATGGTGATAGCATGGTGAAGCTCCAAGTCCCATGGCCTGGTTCTTCAAGGTTGTCTGTGGTTGAGTATTTAT TCTAA
Protein sequence (LotjaGi4g1v0230400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPSLTTTLKETGLNHANNSPLSIKLEASTFLANNHPILTQVPPNITTCTTPHDSPSNNTITAGCFVGFNTDEPRSRHVV SMGKLKGIRFSSIFRFKLWWSTHWSGTNGRDVEHETQFMILENDTGKGRPYVLLLPLIEGAFRASLQPGSDDYVDICMES GSTRVSESTFRSALYIHLHHDPYELMNEAMKVIRVHLGTFRLLEEKTPPAIVDKFGWCTWDAFYLKVHPDGVRQGVKGLV EGGCPPGFVIIDDGWQTFYRDDEPVTEEHGGLSLECSVPGEQMLGRLVSFEENRKFKGYGGGGMGGFVRELKEEFGALEH VYVWHAFCGYWGGIRPGVKGMPEAKVVATKLSPGAEMMMTDLAVVKIVENGVGLVAPEEAHMLYEGLHSHLQSVGIDGVK IDVTHVLEMVSEEYGGRVELAKAYYKALTDSVRKHFKGHGVISSMQQCNDFMFLGTETISFGRVGDDFWCTDPAGDPNGT YWLQGCHMVHCAYNSLWMGNFVHPDWDMFQSDHACAEFHAASRAISGGPVYVSDSVGSHNFKLLKKLVLPDGSILRCQHY ALPTRDCLFEDPLHDGKTMLKIWNLNKYSGVLGLFNCQGGGWCPETRRNKSASDCSHSVTCFASPKDIEWSKGKNPICTK GVEVFAVYMFKDDKLIFLKYTECEQVSLEPFSFELLTVSPVVVLPKNSIQFAPIGLVNMLNSGGSILSVEFDKQDNLVRI GVKGHGEMKVFASEKPVSCKIDGELVEFDYGDSMVKLQVPWPGSSRLSVVEYLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 774 | 774 | 0.0 | – | |
| PANTHER | 1 | 774 | 774 | 0.0 | ||
| Pfam | 27 | 758 | 732 | 0.0 | ||
| SUPERFAMILY | 209 | 557 | 349 | 2.62E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0230400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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