Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0230700 |
| Transcript ID | LotjaGi4g1v0230700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kinetochore protein spc25; TAIR: AT3G48210.1 kinetochore protein; Swiss-Prot: sp|Q10430|SPC25_SCHPO Kinetochore protein spc25; TrEMBL-Plants: tr|A0A0R0JXR3|A0A0R0JXR3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0230700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54122367..54127098) extracted from Lotus japonicus Gifu genome v1.2.
TGAAAAACTAATAAATCGAATAAGGTGACTTATCCGGTGCAAGTGCACTATAGGTCTTGCAAAACAACTAAAATAATCAT TCTTCGCACTTCGAAGAAAGCCAAAGCAAAAGTGGCGGTTTAAAAGTTTGATTCAAAAACCTCAAACTCAACACAGTGAC ACTGGAGAGAGCGAAGCGAAGGAAGAAGATGGAGTCTCCAACCTCTGTCTGCGACACAGAGATCCCTCTTCAAACGCAAA CCATCGATTCCTTCACCGCTTCTCACGCCAAATCTCTTCAATCCCTCAGAGACACTGCACAACAAACCGCTCAACACAGA GGTTCCATTCCATTTTCCGATTAGGGTTTCCAATTTCCATTTCCTTGTTCATTTCACTGCTTTTTCCGATTAGGGTTTTC ATTTTCACTCTCTCGTTTTCTCTGTCAGTTCAATTGGAAGAGGTTAAAGGCAAACTCAGGGAAGCGGAGGATGATTTGGT CAAAGCACTCTCAGGTCACTTCAAATTTCAAAACTTCCCCTTTTGCAGATTCGTTTATTTATTTTTTGAAGTTTTGATTT TGAATTGAATTTGAGTAATGGAAAGTGTCATTTTTTCTGTGTGTTTTCGTTGCGCAGTTAAGACTCGTAAAGAGGCCAGG CGAATGGCTTTGTTGGATGCTATTGCCTCTGCTAAGTCTAGAGTTGATGAACTCAGCACAAGTGTTCAGGAGCACCGAGC CAAAACGCAGGAGTATGCTGCTTTTCTATCTCAACAATCTCTTGGTATTGTACCTTTAACCTTTTCCATTTGCAAATGCA TGCAGCTATTTCTACCTTTTTTATTGTTTTGCATTTATATGTATGGATTTTTGTAACTGACTGATGATAATGATTCAATT AATGTGGAAAAGTGAAAGTTTTTAACATTGCCTCAGTTTACTTATTTGAACTATTATATTGTGTAAAACATTATTGGTCC CCCCCCAATAGTTATCATAATCTGACATGGTTGTATCTTGCAATATTTTCAAGTCTACATGATTATTTGTTTGCAGGGCA TAATGTTGGTTAAAATGATATGTAATTATGCACACAATATATATGTTAAAGTCGCCCACAGAGTTTTGCATTACCATTGG AGTTACATGTTTTTGTCCGGTGTAGAGTATAGACATTAATGCTGATCTTTACGTAGCTAATTCGACTTGTAATCTATGTG CATTTTTTTTCCTTTTCACTGCAGCATAGGACTACCAGGACAGGATATTTTTACAATGGTTTTGTCATAATGGCTTCATT AGTTGCTTTTTGCATGGCATATCTTTGGGATTATGTTTCTGTCTCTCCTTCCATTTATTTGTTTTCATTATTCAACTTAC TACACATGGAAATATGCGTTTTGAGACATATTATGAACTACTCTAAGCTCCTCCTCTCTTTTCCATGTAAAGCTCTGGCA GCATCTGAAGGGAAGTTAAATGAATGCATTGAGCAGAAAGATGAAACTCAGGAGGCCATGTCTTGGTACAACAGGGTCCT TGGCTTTCATGTCAAAGGGGGACGTGGTAATTGATGTTTATCTCTCTGTGCAAGGATTATTCTTCTTCTCAAAACTGATA TTCTTATTGGTTCTGTTCTTCAGGGGTAAAATTCACATTCAAGAATATAAATTTGAACAATCCAAATGAGGAGTATTTTT TTACTATCTTCCATCAAAACAATACTTACACGTGTAAGTAGCATATCCGGTTTTGATTATGATCTTAAAATATTGCGGAT ACACTCATTGAAATCTTAACTTGTTTTTTATCTTGCAGTGTTAAACTGTGAACCTTCCACCGATGACATCAAAGAGTTGA TCCATGAATTAAACAAGACAAATGATCTGTTTAAATTTGTCAGAGTAATGAGAAAGAAGTTCCAAGAAGCAGTGGGGCAA GGTACCATATCTTTTCATTTTAGTGCATTCATAAGATGAGGGACCCTGTAGGCTGAACTGACCACTTCAGTTGCAAATCA AGGGAATTGGCCCTTTATTTAGTCTGATTATTGTTTAAAAACTGGAATCATGATTAAGGAAAACTAGGACTAAAGCAGCT ATTTTTCTGTCAAACCAGTAAGCCATTGCCCATTCTGTAGATTTCTCTGGCGCCAATGTTGGATTTGACAGCCCAAGTCT GAATAAAGGATTTAACTTGTTTCTTTTATGCATGGTTATTAGATGTTACTACCAGGGGTCAAGTTGCACATGAAGAATCT GCATTTATCTCTGCATCTGCTCCAGTCTTATCAATGTCATCTGTTAGAAGTGATTCTACAACCAAGGAAAATGAGCACCG AGATGAACCTGCGGAGGGTGATACACAAATCAAGAAGAAACAATTGCTTCACAGAAGGGTCAAATCAGGAGTTTTATCTC CTGGATCTGCATCATCTGTTCGTCAATCTCCTCGTTTGAAGGTATGAATTAATCACTTTTTTTCTTCAATTAATTTCCTG TTTTTGCGCAAGGTGTTATCCCAAGATCATCATTTTCTTGGTAGAAGATATTCTCCAAATCTGGTGTTATCTATTGTACT TTTTAACATCAGCGTGTGATCTGGAAGTACCTTTATACAATGACCTTTTCATATTGCGATCGTTGGTGTAGATAATCATA TAGACTGATTGCTGGATAGAAGGCACTGTAGATGCTGATAAATTTAGAATTGTGATTTAATTGTTAATTAACATTGCTTA ACGAGTTAACGTCTATTGTTTGAATTAGCTAAACAAGTGGCTTTGACTTCCCCATCAGTTTTTGCTTTTTGGAACTGAAG TGGATTTTGCCTATAATTTTCAATATCATGATCATGAAAGTGGACATTCTGATCAACTTGATTGTGTTTCATTTTTCTTT TCTAGTTCTGGTTGGACAGAAAAGTGAAGAAAACTTAACTTTGGGGCATAGGGCAGGGAAATTTCTTACCCCCTCGTTAA GTAGCGCAGTTTCATGTTTATTTTTTTGCGTTTTTCTTTTATACCTGTTTTTCCCTGGATCTGTATCATAAATGTTATTC TGGAAATATATTATGAATTTATGAATGCTAGAAAACTTGCCAGAACTAACTTGCCAAAGTTATGTGCATTGGCCATTTGG TCTTCATTAGTATACTACTCGTCCTTTTGGGACATTTTTCTTATAAATGTTGGATTAACAATGCATTTGGGTAAACAACT GAATTAAGCTCTGTTAGGACCCAATTGCAATGTATGGGACTAGAGTCTCTCACATTGTAAGTATGGGATTCTAATGTGTG GTTTATAAGGCCTTGGGCTCTCCAACTACAGGAGCTATCTTTTGTGGTATGGTTCTCCCAAGGTTCTTATCAAGCTCTTA TAGCTATAAATTCTTATTCATAAACTTATTTGAAATAAACTCAAAATAGCTTACAGGTAAAACCGTACAAGTGCTTATCC AAAAGCTTATGAAAATAAGCTTGAAAAAACTTGTAGGTATGTAGTTTATCCAAACACTAGCATAAGTTTGTATACTACTC CCTCCGTTCCAAAATATAAATTGTTTTACCATTTGTACTATGTTCCAAAATGTAAGTTGTTTTGCAAACCCAAAGCATTT TTCTCTTTTACTTACTTATATACCCTCTTTTAAGTTTTAATATTATATCTCTTGATTACCACCTTCAATTTTCACCTATG ACAACTCTCACTATGCTCTTAACCAATAATAACATTTCTCTCTCCTTAACACAACTTTAAATAGGGGTATTTCAATCAAA ATATTTATTAAATGATAAGTTCTTAAACAATGTGTATAACCTTAAACAACCTATATTTTGGAACGGAGGGAGCATAAGAT TAACTCAAATAAGCTCTTCCAAACTAAACCTAAAAGGTTTCTTAGGGGTGAAAAATAAAATATGCATAAACAATCTTAAT ATGCTTTCACCTATCCTGTTCTTAAGTTTATTTTTGAGGTTTTATCTTTGATGCATTCATGGGCCCTGGATGAATTAGAT CAAGGGGATCGTTATAATCTGCATTCTGGCATCATTTAATGTCATGTTTCCTAACTTTTTTTTGGAAAAAATTATACCGA TTCTTTCTTAGAACATCAGCTAATGCTGATTTCTCATATATGACAGGCTAGGAAATGAAGTGGACTTGTAGGATGCTTGC CGCCTGATTTCACAATACAAGCTGAGGTGCCTCAAGTGCTCTTGTAGGCATAGCACGCAACTCTGGTTGTTAAGTGCTAA CAAATTGACACTTGATTCCTAAGATGTCTGTGTTCTAGATGTCTGAACCTGTATATAACAGATCAGAAGATTTCCTCTCA GAATGGGTAGAACTGTAGAAGTTGAAACTATGTTGGGAAACAGGAGATTCGTTGTAATCTATTTAAAAATCTTCATGTAT TTATGATTTTGTGTGTACATGTTTAGTATTTTCCCGTTGCCAAACTTGCAGAATTGTTTAATTTAAAATCAGTCATTGTA CTGCTGGTATCTTTTGTTGGCAATGTATATGATGCAAGTGTATTGGACATGGATTTCCATGTTTATTTTTCTGCAGTGTG TTCTAAAATATCATTTTAACCATTAGCTGTATACAGTATATTATTGAACTTTTGAGGGTGGCAGCAGAAAGATTGCTACT ATGAGACTCGTATTAGCTGCTTACATCTTGCCATCATAAGGCATTAAGGCCCAGGGTGATATGGCCAAATACATCAGTCT TGTATATTGGGG
CDS sequence (LotjaGi4g1v0230700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTCCAACCTCTGTCTGCGACACAGAGATCCCTCTTCAAACGCAAACCATCGATTCCTTCACCGCTTCTCACGC CAAATCTCTTCAATCCCTCAGAGACACTGCACAACAAACCGCTCAACACAGAGTTCAATTGGAAGAGGTTAAAGGCAAAC TCAGGGAAGCGGAGGATGATTTGGTCAAAGCACTCTCAGTTAAGACTCGTAAAGAGGCCAGGCGAATGGCTTTGTTGGAT GCTATTGCCTCTGCTAAGTCTAGAGTTGATGAACTCAGCACAAGTGTTCAGGAGCACCGAGCCAAAACGCAGGAGTATGC TGCTTTTCTATCTCAACAATCTCTTGCTCTGGCAGCATCTGAAGGGAAGTTAAATGAATGCATTGAGCAGAAAGATGAAA CTCAGGAGGCCATGTCTTGGTACAACAGGGTCCTTGGCTTTCATGTCAAAGGGGGACGTGGGGTAAAATTCACATTCAAG AATATAAATTTGAACAATCCAAATGAGGAGTATTTTTTTACTATCTTCCATCAAAACAATACTTACACGTTGTTAAACTG TGAACCTTCCACCGATGACATCAAAGAGTTGATCCATGAATTAAACAAGACAAATGATCTGTTTAAATTTGTCAGAGTAA TGAGAAAGAAGTTCCAAGAAGCAGTGGGGCAAGATGTTACTACCAGGGGTCAAGTTGCACATGAAGAATCTGCATTTATC TCTGCATCTGCTCCAGTCTTATCAATGTCATCTGTTAGAAGTGATTCTACAACCAAGGAAAATGAGCACCGAGATGAACC TGCGGAGGGTGATACACAAATCAAGAAGAAACAATTGCTTCACAGAAGGGTCAAATCAGGAGTTTTATCTCCTGGATCTG CATCATCTGTTCGTCAATCTCCTCGTTTGAAGGCTAGGAAATGA
Protein sequence (LotjaGi4g1v0230700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESPTSVCDTEIPLQTQTIDSFTASHAKSLQSLRDTAQQTAQHRVQLEEVKGKLREAEDDLVKALSVKTRKEARRMALLD AIASAKSRVDELSTSVQEHRAKTQEYAAFLSQQSLALAASEGKLNECIEQKDETQEAMSWYNRVLGFHVKGGRGVKFTFK NINLNNPNEEYFFTIFHQNNTYTLLNCEPSTDDIKELIHELNKTNDLFKFVRVMRKKFQEAVGQDVTTRGQVAHEESAFI SASAPVLSMSSVRSDSTTKENEHRDEPAEGDTQIKKKQLLHRRVKSGVLSPGSASSVRQSPRLKARK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 265 | 265 | 9.5E-87 | – | |
| Coils | 40 | 67 | 28 | - | – | |
| Coils | 82 | 102 | 21 | - | – | |
| Coils | 117 | 137 | 21 | - | – | |
| Gene3D | 127 | 227 | 101 | 3.5E-23 | – | |
| Pfam | 151 | 219 | 69 | 6.7E-21 | ||
| MobiDBLite | 250 | 307 | 58 | - | – | |
| MobiDBLite | 256 | 277 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0230700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…