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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0235300 |
Transcript ID | LotjaGi4g1v0235300.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phosphoglycerate mutase; TAIR: AT5G62840.2 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9R6X3|PHYB_NOSS1 Cyanobacterial phytochrome B; TrEMBL-Plants: tr|V7CDP2|V7CDP2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0235300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54947371..54950736) extracted from Lotus japonicus Gifu genome v1.2.
CTTCAATGACGAATCTATTATAACTGTCATTAATTTTAATGGGAAATGACTTATCTTCTCTTCTCTCACTTTTTTATTGT CTCTCTTATCAAAATGAGCACACTCTCTTACACTAATGTGAGTATGTGACCCCCACAATGTGACCCCTTTAATATGTATA GGCCACTTTTTAAAAATATTTTGCAGGATGCTCCTAGTTGATAAGGTTGTAAACCTCCGCCATTAAAACGCCAACGCTAA TAACAAAATGTTAGCGCCAAATCAAACACATCAGACTCTTTCTCTTTCTCCGCCGCAACCGTCGTCTCTCCCTCCCAACC ACGCCACCAACCTCCTTCTCCGTCGCCGCCACCTCCTCAGCACCACCGCATTCACCATCTCCTTCAATCTCAACATCCCG TTCACAACCTCGCTTCCCATTTCAGAGCCAGTAGCCAGCGCCAGCGGCCTCTTCCTCATGCCCCCGCCGCGCCTCACCAA CCGGTAATCACTCAAACTCCGCCACACTGGTGGTGTTTACATTGGTTTAGCTTGTTGTTAACTTTTTGTTGATTGTGGAA GGTATTTTCTGGTGAGGGCAGGGGAATCAGAGTTCGAGAGGATTGGAGTGATCAACACGAACCCGGTGGCGAAAACTTCA GTGGATAGTGGTTTATCTGAGAGAGGGAAGAAGCAGGCGGTGAGAGCAGCTTTTGATTTGAAAGAAATGGGTGCATGTGA CAATAACTGTTGGATATGGCCTGCTATAACTCAGAGAGCTTACCAGACTGCTGAGATTATTGCTTCTGTTAATGCAGTTA CTCGAAGGTATCTTTTCAAATAACAAAATGATCATGTTGCTAATTTAAATCTTGAAAAAATCTTCACTGTGATTTTTATC ATAAGTTTTTGAAGTATATGGTTTTGTTTTGATTCTGAAGTGAAGAGCAATCTAGTTATCTAGCACAATGTTTTTTTGGG ATAGGGTAATCATCCCAATTCCCAGAAGCTGAGTGTGTTTGTAAATTTTTTTGATTTCAGTTATATAGTCCCAGAATACA GCTTTCTGGATGCCCGTGGATTAGGTGCTTATGAAGGAAAAAATTTGGAATCTGTTTCAGAAGTAGGATTTCTCCCTGTT ATGTTGTTTTCCTTAAGACTTTACCTATAATTTATAACATGGTAAATTGCATATATTTGTCCTTAATTTTGGTATTATTT TGATTGTGATGTAAAGTTCATATATAACTCTGGATTTGGCTGCATTAAAATGAGGATTGTACTGAATTAATAAACTAATA ATCACTTGTCAAATCTATAGAATAGATTTTAGCAACTTAATTGCATGTGCTGTGCATGTCTTTTATCATAGTTTTAGTTA GTGCATGTTTGGATATTTTCTAAAATTGATTCTAAAGCCAAAATCAATTCTAGGCCGAAACTTTTGTGACTAGCTTCTAG ATGCCATAATTAAACCTGAGGAGAAATAAGTTAAGTCAAACATGCTATTAATAGTTAAAAATCAACGGTTATGACAACTC ATGCTTCACTCATGTTTTGATGAACATTTCCTATCTAAGTGTAATTTGTGTAATGATGTTAAGAATATTGTATCTAATTG AGGGATTCTTTCAAATTCTCCAGATATATGTATCAGATGGAATGTCTCCAAACATCAAACCTCCCCCCACTAATGATGGA ACTCCAAATGAGTGTGTTGCAGATGTTTTTGTTCGTGTGACACAACTCATGTCAATTCTTGAAACTCAATACTCCGGTGA CACGGTTGTTATAGTCTCGCCAGATTCTGACAACTTGTCAATCCTTCAGGCTGGTTTGATAGGGCTAGACCTGCGAAGGT AACTGAATGATGGATAGTCCTAAGTCCTAGCTCCTGTTATAGTGTGTATGAATTTAATTAAGGCTTCAATCTGGTACTCA GTTTGTTTCCTTTTATGCTTGCTTAACTTTCAGGCACAGGGATTTGTCTTTTGCACCTGGTGAAGTTCGCTTTGTTGATA CCAGTGACATTCCTGCTTACAAGCAGCCCCCATCTCGTGTATATAAATGTTTGAAGCCGCCACCAAATTGTAACTAGCTG TTTTCTTTCGTTCAGGTTATTGTGTCTGCATCTTCTGTTTCATACTAGCTTCTTATGATGCTTTATTGAAAGGGGAAAAA ATGTTATGCTGATAAAATCTTAAATTATGAGATGTCTGTGAGTTCATAAATGTAAGTGAAAGCTTATGCAAGTGATGGAA ATGGAAAAAATGAATTGAAATAGAATGAATGAAAAGATTAAGATACTAGGTTATATTGTTTAGTTTATTAAAGTAGGAGG AAAAGAAAAGAAAAAAGATTGTTTAAATCCCCCATGAGGGTAACTTAACCCCATCCTAGGAGGATCTGTATAGCATCTTC AAATATTTAAGCATAGCAATTGTCTTAGAATTAAGGGCAAGAGCAAGAGTTCCCTTGAGGAAATTATTCACTATGACCTG TGGGCTCGAGAATATGCTGCTAGTTTGCAGAACACTGCTTGCTTTACTCCTATTCCTGCATGAAGAACACCGTAATTTAT GAGGGCATTTAATGTATACAATGTAGGATGAAGCATTTCCCAGATATTGAAAAATGAAAAGGATTTTACTGATGGAATCT TTATATTGTCATACATTTTACTTGATCTTACAGTTCTATCATAATCTCAACGAAAATAATTTGTCTTAGGATGTTGGCCA CTATCAAAACTCTTGAGTATATGTTGTCTAGGCACATTCGGAATAATAAGATAAGAAGGACAATACACTTATCTCCATGC TACATTCAAGTAAGTTTAGTTCCTCGATGTTAGTAATAGTTGGTTCATTACACATGATCATTTCATAGTTGGTAAATTAC TATTCAAATTAAGTTGAGAGAACTCACAAAATTGAAGAGGTTCAAATGCTCAAATCCCAAACAAATTGATTGGTTCAGGA GCTTGCACATGTTCTGGAAACGAATCAACAACTAGTACATTTTATCCTTGAATGTACTAATAGATAACAAGCAAGTTTTT CAAAAGGAGACACCAAATAACATTGTCTTTATTTGCCACTGCCGTATGTAAGAGGAGAGTGCCAGAGTGGGCTGCGCACT TCCTTTAGTAGTAATTGGACAGAGCGTCCCATGACCTATTTAGTTTTAGGCTTAATTACAACTTTCGTCCCCGACGTTTA CCAATGCCACGATTTTGGTCCCCACCTAATTTAATTACATGGATGGTCCCCGACGTTGTACGCTGGGTGCAACATTAGTC CTACCGTTTATTTCTTAATGGAGGAGGCTTACGTGGACGTCTAGTTGGAGAGAAAAAGGAGATCTGAGGAGAGAGGGGAG CACATG
CDS sequence (LotjaGi4g1v0235300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCAAACATCAAACCTCCCCCCACTAATGATGGAACTCCAAATGAGTGTGTTGCAGATGTTTTTGTTCGTGTGAC ACAACTCATGTCAATTCTTGAAACTCAATACTCCGGTGACACGGTTGTTATAGTCTCGCCAGATTCTGACAACTTGTCAA TCCTTCAGGCTGGTTTGATAGGGCTAGACCTGCGAAGGCACAGGGATTTGTCTTTTGCACCTGGTGAAGTTCGCTTTGTT GATACCAGTGACATTCCTGCTTACAAGCAGCCCCCATCTCGTGTATATAAATGTTTGAAGCCGCCACCAAATTGTAACTA G
Protein sequence (LotjaGi4g1v0235300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPNIKPPPTNDGTPNECVADVFVRVTQLMSILETQYSGDTVVIVSPDSDNLSILQAGLIGLDLRRHRDLSFAPGEVRFV DTSDIPAYKQPPSRVYKCLKPPPNCN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 106 | 105 | 1.0E-55 | – | |
SUPERFAMILY | 15 | 82 | 68 | 7.77E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0235300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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