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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0252800 |
| Transcript ID | LotjaGi4g1v0252800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant calmodulin-binding-like protein; TAIR: AT5G61260.1 Plant calmodulin-binding protein-like protein; Swiss-Prot: sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alpha; TrEMBL-Plants: tr|K7MKF4|K7MKF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0252800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60665723..60669409) extracted from Lotus japonicus Gifu genome v1.2.
AGGTGAATTTGTTGAAAAATATCTACTCTTTTAAAGTAATCTCAAAACTGCGAGATGATTAATCTCATGGTTGTAGTTTC TTGCAACCAAAAAGGAACAAATAAAGGTAGTTTGGCAAAGGCAGGGAAAAAAGGGGTTAAGATAAAGATGCTGACGTGCT TTTCTGAATGTGAGTATGTAATGATATTGCATGGTTAGGGGGGGATGGTTGACAGGGTGTTATTTCTCAAGGTGGGACTC TGGAAGGTTACTTTCTCGCAACAAACGCGCTTCATCAACACCTTACACCACCCTTTTTCACTTTGCATCCATCCATTCCT GACTTGCAGTCTCCCTTGTTGGGGTTCTTCTTGCATGATCTCTTTTTAAGAATTACCACCCTAACAAGGTATTATGTTGA TTATTACAATTTATGAATATGGTCTTGTTGGATCATGCTTGTTTTATTCATTTCTGTTCATTTTTTCCTTCTTCTCCTCT TCATTGATGTTATGATGCATGCCATGAACATGATTAATGACATAGGCCATCTCATTTAACGATGTGTGATCATGATCTTG AATGTCATAGGATCGTTTCATCAATGGGATGCTATTCTCTTATGTGATCAGATCATGATTATTATTGGTCTCTGGAGAGA CAAGTTTGTTTCATTTTTGTTTGCCTTTTTCTCTTCTCTATCCTTGTTCTGTTCTGCTGTTTTATTTTTTGGTCTGAAAT CTGAATCAATTCGTGATGTTAGGATCTGCTGTTTATAGCACCACAAGATCTTCATTTTCATTAATCAAATCTAAGTTGGT GTTGTCATTTGTTTGCATTAATCAGATGAATGATTCTGGGGCCTAGTTTAGAATTTCATTCAAACATTAGTTGCCCCTTG AAGTTGTGCAAACAGGATTTAGATACAACCTATCAAAAGCTTTAGATAATATTAAAATAATCTTAAACACAACTTTTGAT ATCTTTCTTAAGTTTTTGATTGATTTTGTCTATAGATACTAGTGCTAATGAGTTGTTCATCGAAAAAAAAAATTATGTCA TCAACAGTGAAATTTGCTTCCTTTTATGGAGTAAAATTTATTATTGAACTGCAAGACAAATGTTAAATTGTCTGCAAAAG ATGAATAAAAGGAGTAATTGATGTAAAAGATTTCATTTCATGATAATGTGATAGAACAAAATCTTGAAGTTAATTATTTA TTCCCTTCAAGCAAGGCTTTTATCCTACTGTTTTCATTATTATGTTCCTAGTTTTCAGATTTGACAATTGTTATGCTCAG TGAAAGGATCCAATTCCTGCAGTTGGAGACTAAACATAAAATTTGCTGCACATTCAAGCTTTTAAATCTCCTCTTTGAAA TGTTTTCATGTCACTAATCAAAGTGTTACCATCGATGTGTCAAGACAATCTAGCTTAGGCACCATTCCTCTAAAGTAGAT CCCAGAAAATAAATAAGCAGGTTTGGATCAACTTGTTTTTTCCCAGAATCAATTCTGGTGCTCAGAGGCTTCTCCTCGGA ATTGATTTTGGTTTTATATTCAATGTAGAAGGATTCCCAAACATGCATTAAATTAAATTGTACATATCTCATGTTGCTTT AGTTAGCATCTTTCCTCCCCCTTGCTCTACATCTCTGAAAGAGTTCTTATCTGTTGCAGGGGCCTGAAATCATTGTGTCA TCCTTTATCAGATGAGGACAGAGGAAAGTACTATTAACCAGGAGAAGTCTGAGAAAACTGATCCTGAAGAAGTTGTTGAA AAAGCAAATCCTGAAGAGACATTAACTATCACAAAAGTCCCACCTAAGATCCTTTCACGTTATCTTAGTGCTCGAAAGAG TTCCTGCCATGATTTTTGCAAGTATGGTATCAAACATGCTGATGAAGAAAAACCATGGAGAAGGGTCAACACAAGGGGAA GAAAAACCAATGTTCAAACCAATGTTTTGGAAGAAAATGTAATATCTTTGGCAGGGACAAAGAAATCAGGAAGAAGTTCA AAGCCTTCTCTGACTTCAAAAGGTGAAGATCCCAGCTCTCCTATTGACATCAAGGAAGTGACAAATGAAAAAACAGTTAC TTCAGAGAAAAATTCACCATCTTTTGAAGAAACAGATGTTTCAATTGAACATCACAACAGTGACCTAAGGCAAGAAGGTT CTGAGCCATCTCTTCCAGTGCAAGAATGTTCCAAAAGTCAAACCAAAAGGGGAATTGTCAAGAACAAAACTGCTTTTGCC TTTGGTTCAAGCAGCCCAAAGAGAACTGAAAGTAGAAGCAAACAGACAAAAACTGAAGGCAAGGGAAAATCAACACCACC AAGCGTTAACTTGTCTCCAAAACATAATGTCAAGAAGAAACCTTCAAGCTCACCAAGTGCTAAAACTGTCAAAAACTTGA GGGGAGTGTCTTCTCTGAAAACTCATGAGAATGTTGAAGAAATCAAACATGAAATATCCAGCAATGACAATTTACCAGAC AAAATTTTGCATGTCATTGAACCTACCTCTGAAAATTTATCTGAACAACCTCCTAAGTCTCCCGGTGCAACTAAGTTGCC TTCACCCTCTCATCCATCATCAGGGGAGAAAATCTTGAAGAGGAGGACCACTAAGAAAATTGCCAGTTCTGGAATGTCTT CAACTTCAAGGAAGAACCTTAGACATGTGACATTCTCTCAAATATCTTCAGGGAACAAAGGCAAAACAAACATGGTACGT ACTTCTTCAAAATCATCATCAGTTTCATCATCTGCTTCCTCATCCATATCTTCAATTTCAAAACAAAATGGTGCTGCCAA GTCTAAGTCCAACAAAGCAGGACAAAGTCATCAAGGTGAAAATGTGAAGGTGGGGTACAAAATCAGGCCAAAAATGAGCA CAAAAGTTGTTGTAGGAAACAAAGTTGTTCCACCCCGGAAATTATCTTTCAGGAGAGGAAAAGTGATTGAAATTCAGCCT CAGAACAACAACATTCCAAGGAGGCTCAAATTCAAGCCAGCACGGTTGCTTGGTGCTGATGACATCAAAAGAGAAATAAA TGGTGCAAGAATGAGAAGGGCCATTACCAATAAAAAAGCTGAAGATGGTGGTGAGGTAAATGCAGCTAATAATGCAAATA CTGAATCTGAGAAAGCTGTGTCTAGGCACCAAACTGTGGAAGGAGGTAAGAAGAGAAGCCTTGTGAGAGATAGAAGCAAG AATATGTATGGTTCCAAATCAGCTTCTGAGAAAGTGATTTTGAGGCATCAAAATGTGGAAGGGAAGAAACAGAACTCACG TTTGTATAACAATGTGATTGAAGAGACAGCAATCAAGCTTGCTGGGCTAAGAAAGAGCAAGGTTAAGGCTCTGGTTGGTG CATTTGAAACCGTGATATCTCTTGATTCTCCTCGAGCAGAGACCAATGCTGCTGAAGCGAGCACAGCTTGTTGAGTTTTA CCTCTGGTGTGTTGTGTTGTTATGTATTCAACTCCTAACATATGACTGTGTTGTGTTGTATAGAATGATAATTATGTATT TGACAAAGTGGTCATGAGCTTTCTACCCTTTGTGAAACTGCAACTGTTTGTGGCTTGGATTTGTAAAGCTAAGATTGTTA ATATTGTTTTATGTGTTTTACTTAACCTTTTCCCTAGGTGTCATTAAGATTTGGTGAATGAAAATATTTCACTTGAATTT GTTACGC
CDS sequence (LotjaGi4g1v0252800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGACAGAGGAAAGTACTATTAACCAGGAGAAGTCTGAGAAAACTGATCCTGAAGAAGTTGTTGAAAAAGCAAATCC TGAAGAGACATTAACTATCACAAAAGTCCCACCTAAGATCCTTTCACGTTATCTTAGTGCTCGAAAGAGTTCCTGCCATG ATTTTTGCAAGTATGGTATCAAACATGCTGATGAAGAAAAACCATGGAGAAGGGTCAACACAAGGGGAAGAAAAACCAAT GTTCAAACCAATGTTTTGGAAGAAAATGTAATATCTTTGGCAGGGACAAAGAAATCAGGAAGAAGTTCAAAGCCTTCTCT GACTTCAAAAGGTGAAGATCCCAGCTCTCCTATTGACATCAAGGAAGTGACAAATGAAAAAACAGTTACTTCAGAGAAAA ATTCACCATCTTTTGAAGAAACAGATGTTTCAATTGAACATCACAACAGTGACCTAAGGCAAGAAGGTTCTGAGCCATCT CTTCCAGTGCAAGAATGTTCCAAAAGTCAAACCAAAAGGGGAATTGTCAAGAACAAAACTGCTTTTGCCTTTGGTTCAAG CAGCCCAAAGAGAACTGAAAGTAGAAGCAAACAGACAAAAACTGAAGGCAAGGGAAAATCAACACCACCAAGCGTTAACT TGTCTCCAAAACATAATGTCAAGAAGAAACCTTCAAGCTCACCAAGTGCTAAAACTGTCAAAAACTTGAGGGGAGTGTCT TCTCTGAAAACTCATGAGAATGTTGAAGAAATCAAACATGAAATATCCAGCAATGACAATTTACCAGACAAAATTTTGCA TGTCATTGAACCTACCTCTGAAAATTTATCTGAACAACCTCCTAAGTCTCCCGGTGCAACTAAGTTGCCTTCACCCTCTC ATCCATCATCAGGGGAGAAAATCTTGAAGAGGAGGACCACTAAGAAAATTGCCAGTTCTGGAATGTCTTCAACTTCAAGG AAGAACCTTAGACATGTGACATTCTCTCAAATATCTTCAGGGAACAAAGGCAAAACAAACATGGTACGTACTTCTTCAAA ATCATCATCAGTTTCATCATCTGCTTCCTCATCCATATCTTCAATTTCAAAACAAAATGGTGCTGCCAAGTCTAAGTCCA ACAAAGCAGGACAAAGTCATCAAGGTGAAAATGTGAAGGTGGGGTACAAAATCAGGCCAAAAATGAGCACAAAAGTTGTT GTAGGAAACAAAGTTGTTCCACCCCGGAAATTATCTTTCAGGAGAGGAAAAGTGATTGAAATTCAGCCTCAGAACAACAA CATTCCAAGGAGGCTCAAATTCAAGCCAGCACGGTTGCTTGGTGCTGATGACATCAAAAGAGAAATAAATGGTGCAAGAA TGAGAAGGGCCATTACCAATAAAAAAGCTGAAGATGGTGGTGAGGTAAATGCAGCTAATAATGCAAATACTGAATCTGAG AAAGCTGTGTCTAGGCACCAAACTGTGGAAGGAGGTAAGAAGAGAAGCCTTGTGAGAGATAGAAGCAAGAATATGTATGG TTCCAAATCAGCTTCTGAGAAAGTGATTTTGAGGCATCAAAATGTGGAAGGGAAGAAACAGAACTCACGTTTGTATAACA ATGTGATTGAAGAGACAGCAATCAAGCTTGCTGGGCTAAGAAAGAGCAAGGTTAAGGCTCTGGTTGGTGCATTTGAAACC GTGATATCTCTTGATTCTCCTCGAGCAGAGACCAATGCTGCTGAAGCGAGCACAGCTTGTTGA
Protein sequence (LotjaGi4g1v0252800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTEESTINQEKSEKTDPEEVVEKANPEETLTITKVPPKILSRYLSARKSSCHDFCKYGIKHADEEKPWRRVNTRGRKTN VQTNVLEENVISLAGTKKSGRSSKPSLTSKGEDPSSPIDIKEVTNEKTVTSEKNSPSFEETDVSIEHHNSDLRQEGSEPS LPVQECSKSQTKRGIVKNKTAFAFGSSSPKRTESRSKQTKTEGKGKSTPPSVNLSPKHNVKKKPSSSPSAKTVKNLRGVS SLKTHENVEEIKHEISSNDNLPDKILHVIEPTSENLSEQPPKSPGATKLPSPSHPSSGEKILKRRTTKKIASSGMSSTSR KNLRHVTFSQISSGNKGKTNMVRTSSKSSSVSSSASSSISSISKQNGAAKSKSNKAGQSHQGENVKVGYKIRPKMSTKVV VGNKVVPPRKLSFRRGKVIEIQPQNNNIPRRLKFKPARLLGADDIKREINGARMRRAITNKKAEDGGEVNAANNANTESE KAVSRHQTVEGGKKRSLVRDRSKNMYGSKSASEKVILRHQNVEGKKQNSRLYNNVIEETAIKLAGLRKSKVKALVGAFET VISLDSPRAETNAAEASTAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 3 | 580 | 578 | 1.0E-212 | – | |
| PANTHER | 3 | 580 | 578 | 1.0E-212 | – | |
| MobiDBLite | 64 | 83 | 20 | - | – | |
| MobiDBLite | 92 | 113 | 22 | - | – | |
| MobiDBLite | 92 | 386 | 295 | - | – | |
| MobiDBLite | 139 | 154 | 16 | - | – | |
| MobiDBLite | 155 | 192 | 38 | - | – | |
| MobiDBLite | 203 | 242 | 40 | - | – | |
| MobiDBLite | 243 | 260 | 18 | - | – | |
| MobiDBLite | 272 | 294 | 23 | - | – | |
| MobiDBLite | 309 | 381 | 73 | - | – | |
| Pfam | 410 | 495 | 86 | 9.0E-6 | ||
| SMART | 451 | 563 | 113 | 5.9E-15 | ||
| MobiDBLite | 476 | 499 | 24 | - | – | |
| MobiDBLite | 483 | 499 | 17 | - | – | |
| Pfam | 507 | 563 | 57 | 7.5E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calmodulin binding | Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. |
Expression pattern of LotjaGi4g1v0252800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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