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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0256500 |
| Transcript ID | LotjaGi4g1v0256500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT5G15800.1 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|Q39685|CMB1_DIACA MADS-box protein CMB1; TrEMBL-Plants: tr|V7CCY2|V7CCY2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0256500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:61133660..61140665) extracted from Lotus japonicus Gifu genome v1.2.
CTTAGATAAGGTACCATATATAACAAGGTATATGAGAAACCATGTCAAATTAGTATGCAAACATTGTTCCAATTTTTGAC TTGGCTAACTGATTAAACATATTTTGGGACTACACAGTACAAATATGATATAACCATTTATAAGGTAACCTTTTTTCAGG GTTTCCACTTTTATTTCTTCTCTTGCACTATTGTTTTATCCCTTTTGGTACCCTAAGCAAAGAGGCCATTTAAGAAAGCA TTCTCATCTCTTAACCAATACAGGAAAGAGTGCTCTAGAAAGAGAGAAGAAAGATGGGAAGAGGGAAAGTTGAACTGAAG AGGATAGAGAACAAAATTAACAGGCAAGTGACTTTTGCCAAGAGAAGAAATGGGATACTCAAGAAGGCTTATGAGCTCTC TGTTCTCTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGTGGGAAGCTCTATGAGTTCAGCAGCACCTCCAGGT ATATAGATATACACATAGCTTTTCCTTATTTCCAGGTCTAAACCTTCTGTTTCTGTTTTTGTGTGTGTGTATCTAGTGTT TGAATAAATGTGCAAGAGATAACATATTCATGTTTGGGCATGTTTGGGTGAATTTTGTGCAAGATCTGTGCTTCTTCTCC TCAACTCAACATTTTACTGATTGATACAAACTACAAACTACATATATATTACCTCCAATACAAGTTTTTCGCTACGCTTA GAGCGTGTTTAGAAGCTCTTCTTTAGTTGATTTTAAAGTCAGAAATAAAATTTTGGGGAGAAACTCATATGAGTAACTTC AAGCTCTCAAAATCAATTTTGAAGAAAGAAAAATTGATTAAAAGATGTTCTATAAGATAAGCAAGTCCAGCCTAAAAGGA ATTAGAGAGAAGATATCCTTTTTGTCTCTAAATATATTTCTTCCTTTTTGATTCCCAGACTTGTGGGTAAAGTTTTGATC TTTCCACTCTGATTGTCTTCTAGAATTATTTGGATCTACGGCGAAAAATCATGGTGAACCAAAGTCAAGGTTGATGAAAA GAACTTCAGTTAGCTTATTTTAACTTCAACTTTGTTTTTCAGTGTCTAATAATCCAAACATATGCATTTATACACACAAA AAGGAAAAAAAAAACTTTGTCCCATTTAATTTCTACCCCATCTTGTGTAGATCTGAAAGCCCATGTCCCTATATGAGGAA GGAGTGTCAAAGAAGGAAAATTTTCTTTTTTCTGTCTCAATCAGAAGTTGTTTTTGTTAAGCTTTGCTGTGTCTATTGGA AGATGGGTTTCATGTCTTCTCCACTAGGGCAAGATCATTAAAGGAATAAAGAAGAGTTCAAAAGGAATTAATCATCTGTT ATAAAATTATTTTAGGGGGTGTGATTGGTTACCTTTCATTCCTCTCAAAATTTTGCCAAAGTTTATAAATTTGCTTATTT TGGGTCATTTTTGTTGATGAAGATGAAACCATGAACTAGCCCTAATAAGAATCTGATTTGATGTTCTTTATTTTCTTTTT AATTTCTGGCCTACATCGTATTAGGGATAGAGCATGCCAGGATTTACTGTTATGATTTGGTGTCAGAGATGGGATGTCTG ATTTGCAAACCTGTTTTACTTTGCATTACAATTTAAGGATGGCAAAGAGAGAGAATGAGAAAAAGAGCATCTTTAGCTTC TGAGGCAGTAAAACAAAGTCTATCCTTCAAACCGTTGAGGAATAGCTGGTTTGATCAAAAAGTGAAAACAATACATTGTT CTCTGTCATACAAAACAATTATTTCCTCGATCATGAGATATTTCATTAACTCTGAGATTTGGATGAATGGTTAAAAATCA CGGTTAGCTGATTTTAATTTTGTTGTGATTTTTTTTATGTATCCAAACTTTCATATAGTTTTTTTTTTAGTTTTTGACCT TAATAACTCTTTGTTAAAATGGTAAAGGCTTGGATTTTTTAAGGGCAATTTTATGTCAGAATCATGTTTTTATTTGTTAT ATTAGATAATTTTTAGTACATGTTATTGGTTAATTCTATTGAATAAATACTAATTCACCCATAAACTTATTTTTATCTAT AATAAAATGTAATACTTAAAATATGATATTTATAATGCACTTTTTATGAGCTAAAATAAATTTGTAAAAAAACACTTTTA ATTTGTGATTCTCAGTCTATCATCGTAGACAAAGTCAATGTTATTTATAAAATATTTCTTACAACTATTTTAATTTACAA TAATGTTATCTTCACACCTCTGTTTGAGGTGGAGAGAGGTGGAATGAAGAGAGAGATATGAAGAAAAGAAAAAATAAGAA ACAGAAAGTATTAGATGTGATAAATGATAAGAGAATAGAGATAGAAATATAAAGAGGTGGAAATGAAGTGTTTCAAAAAT GAGGTGTGTATATATCATTACTCTTTAATTTATGAACTAAGTTTTTCTTAATTGATGGCAGATAAAACCATCTTTTACAT GCCACGAGATTAATTCCAGCACACAAAAAATCCTACAAATTAATAATAAATGTGCGTATACTAATAGTATGCAAGTTTTT ACACATACACTTAATTAGATTTATTCTTTTACCACATTATAATTAATTAAATTTAAAATAAAATAAACAAAAAAGATAGA TGCCTGTGCAAATTTTTTTCACCTTTAGGGAATTATAATTAATTTCTTAGTGCATTAGCAAAAGGGTTTGGTGTTCATAT TACAGAATTTGCTTGGTTGTTAGAAAGTCTTGTCCTTGGCTTTATGACTTTGATTATTAACCTCAGGTAGCCATTTTGAC TTGGTGAGTACATAGTGTTTTAACTTTTAAGTATCTCGATGCGTCTTGGTTTTGTGAAAATATTGTCTCCAAAAGCTCCA AACATTATATTATCCTCATAATCATCTTATTATTGGATCATTATGATCTCTAAAAAGTTTCAACATTTTTCTAGGTTTTT GTAAAAAGAACTTATTGAATTAGCTCCAAGGAAAACTGCAATGAGGTCATCCACATGAACCACCCTATAAGGACATTATA ATGAAATCATACAACCAATCATATATTAAATTAAACCATCTTAGACAAAGATTAGAAGCAAAAAATTGGAGTATGACATA TACATGTTTTTTTTTTCCTTCACATTTTTACAAATTTTGGTTCAAAAAGTCATCAGTTTTCTCAATTTCAAATCAAATGA TTCCTCATTTTGATTGAGCTTTTCATCATGTGATCACAGCATAATGAAAACACTGGAAAAATACCAGAAGTACAGTTACA GTGCACTAGAGTCCAGCAGTCCAACCAATGATACTCAGGTAATTAACTCTTCAGTTAATTCCAGAAATAATTTTGTTTTT CTTTATGTTCACCATCAATTATATCAATCACTTTTGCTTTGGTGAGATTTTCCATCTATGTGATTATAGCTCTACCAAAT ATGAAGTAACTGCTTTGTAATATGTATGAAAATCTATTTAATAGTTAATATGTCCCTGTGCAGAACTACCAGGAATATGT GAGACTAAAAGCAAGGGTAGAAAACCTGCAACGTTCACAAAGGTAATTAATTAACTTAAAGTAAGATTCTATGAAGATTA ATGCACCTAGATACTACCTTATGTTTTTAGTCCTCAGCTATTTTTTGTTTTGTTTTTTGAGTTAAGTTAAATAATACTTT AATTTATTCAACATATCATAGGAGTAATATTTTTGAGCTAATGATTCTAAATGCTGAAGGAACCTTCTCGGAGAAGATAT TGCTCAAATGAATACAACTCAGCTGGAGCAGCTTGAGAATCAATTGGAGGTAGCATTGAGGAACATCAGGTCAACAAAGG TAACATTGGTTATTTTCAATTTGAATTATCAGTGTTTTGAGTTTGTTTAAGTTAAAGAGTGCCATAAACTAGTCTCGCTT ACTGATGAAGATAAATTCTAACTTTTACATGATCTGACAGTTCTGTTATCTCAACATTGAGTCAAATCCCTGGTCCCAAT GCCTTTTTATTTGTCAATTGAACTGGCATAGGAAGAAGACTTGTAGCTAATTTACTATTCACAATTTTACATTTGGAAGC CTAGAATGGAGGACATCCTCTACTGCAAAATATAGGGACGATGCCAAACCATAAGTTTGATGATGACTGGAATTCGATGA ACAGGAAAACATATAATGGAATATATTTTTGTTGTCTCATTTGATTGCATAAAGTACGTGAAAATTTGATTATAGAATAT TTCAATTATTCATTGGCCATGAATTAGGTGATTGGTATTTGGTGTATTTCCCAAGATGTAGCCCGGGGGAGATTGTTGTT GCGTCTACACCTTCACTTATTGACTCAAAAAAGTTTATAAAGGGACATGTACTTGGGTCCCGTTTGGAAAAACAACTTAA TTAAGCGCTTGTGGTCATAAGCGTTTATTCATAAGTTATTTTAAAAAATTAATCGAAATAAATTGAAAATAAGCTATATA TAAGCATAAGCTCTTTTTCATAAGATATCTTGAATAGCTTATGAAAATAAGCTCAAAACAGCTTATGACCATAAGCTGTT TGAATAAGCTCTCCTAAACACTGACATAAGCGCTTATGTTGTCAGATAAGCTCTTCCAAACGGGGCCTTGAACAATATTT GAGTGTTCTTCTACGCTAGCTCAGTGTTTTGCTCATTTTCCCTTTGTCATGCCTCTTGAGAACCCATGCCTCTTGAGAAC CCATGCCTTTGGCTCCAACTCCTTCAAAAGCGACTAACCGTCCTCATCAACTGCCTATGACCCCTAAGAAGCGTCCTTGA AATCCATTGATACATCCCACATATCAATTGAACATATTGTCCGCCTTCTCATCGAACATTAGTGTTGTAAATGTGAACGC TAAAACATAGGCTGAATATGTGTTCGATCCATTTCAAGTTACCGTCTGCCAGACCAACGCTACAACCATCCTCATCAACT GCCTATGACCCCTAAGAAGCGTCCTTGAAATCCATTGATACATCCCACATATCAATTGAACATATCGTCCGCCTTCTCAT CGAACATTAGTGTTGTAAATGTGAACGCTAAAACATGGGCTAAATATGTGTTCGATCCATTTCAAGTTACCGTCTGCCAG ACCAACGCTACATTGGCTAGTGATTTAGCATCGAAGAAGTTGACGCCTGTGGCAGCATTGAACAAACATTAATTGGCGTC GGTCTATGTGACACAAATTTGAATTTTGACGTATTGTGTTGACTTAGTGCAGATAGAGCGACACTAAATAAATTCTTTCT TGTAGTAACCATGAAGTAGTACTCCCAACTCTTTAGCTCCCAACCAACTCATGTATCACCATAACAGCTTACATGAGTAT TGGGTACTATGCTTTAGCCAATCCTTTTGAGTAGAATCTGCATCTTTCAATAACTTGTTGTCTTGAGAACTCAATATGTT GATTATTAACTAATTTAGAAGCTATATCTACTCTAAAAGGATTGACACATTCTCCTTTCATATCATTGACATTATTTCTA TCACATTCTCCCCTTTTTAATAAGCTAATTGATAAGCCATATAGCTGCAAAAGGAGGAGGTTCCAGGGGTAATTGTTTCC AAAGCTAACAGTACACAATTGTAAATCTTGTAACTAGCTGCTTGAATTAGTGTTCTTTTTCTTTGCAAATACTTTCACAT TTCTCTCTCTTTTTGTTAGCTAGAGTTTTAACATATGTTAGATTTTTTCAGACTCAATTCATGCTTGACCAGCTCGCTGA TCTTCACAACAAGGTATCTCCAAGTTCCTTTCTTTCATTAATTAATTAGTAGACTCCGATTAATACTGCATGTCCTGTTC TTTGGTGTAACCTTGGCTTTCACTAATTCAATGCAGGAAGCAGTGCTAGTCGAAACTAATCATGTGTTAAGGAACAAGGT AACAATTGTTTCCAAACCCAATGCAGATCTTTGATTTGGACCTTAAATCAGCATATAGATGGCACTCATGCGTATATGCT CTTCCTAAACTTCAATTGTTAAAATCTTTCTGATATATATTTTTCTCTAATAGGCAACTTTTTTTGTATATTGAAAGATA AATTACACCCTCCTAGGATTGATCCCTCCTCTCCAACTCATATGTCTCAAGATCTTACCACTTGATGATCTATCCTTCAG GGACAACTAATAGGCAATTAATGTAGTTTAGCTATTACATTGCTTCTGATCAAAATTCTCTCTGTTGAAACAGTTGGAAG AAAGTAATAACTCACATAATCCAGTGGTCAGATTGGCTTTGGAAGCTGGAGTGCCTAACATCCATTACACTCGCTTCCCT CCTCAATCAGAGGGGTTTTTCCAGCATATGGGAGTGAATCCAAACTTGCAAATTGGGTAAAGTCACTGATCTAGTCATAA AAATACTTCTCTGTTTGTTTAAACTAGATGTATAATCCATTGCGTCAATCACATAAGAGTCCATGAGAACCACTATGAGT GACAAAACTCTCTCTACCAAGTATTTAACACAGCTGCATTCACATGGATACAAACAAATCTGCTTAAGCTAGAACAATTC CGGTCAATCCCAGTGTGTGTTTTGCTGTAGTACATTGCAGTAAAAGGTTTTATTTATTATATGCAGGTACAATCCCAGCC ATGATGATGTAAATGCTGGAGCTTCATCCTTAAATATGCATGGATTCGCCTCTGGGTGGATGCTGTGACAACATTGAGTT TACTTGCAACATAGACAAAGAATGGTAGTGGATTTGTCGACCATATAATTCCTTAAAAGTTGATATATATGTTTTAGTTT TAGTTTTCTTCTGCATCATTTATCAATGTTTAAATAAATAAATTTTGCAAGTAGTATGGTCATAAAAATTTGAACCTGAA AAGTTGTATATTTGTACTGAATTCAAAACTTGTAACCTTTAATCATATGTGCATGAGATTAGAACCTTGTATGTGCTATG ATATAATAATGTCAAATCTATGTATGATCACCTTTTTATTTCATAT
CDS sequence (LotjaGi4g1v0256500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAGGGAAAGTTGAACTGAAGAGGATAGAGAACAAAATTAACAGGCAAGTGACTTTTGCCAAGAGAAGAAATGG GATACTCAAGAAGGCTTATGAGCTCTCTGTTCTCTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGTGGGAAGC TCTATGAGTTCAGCAGCACCTCCAGCATAATGAAAACACTGGAAAAATACCAGAAGTACAGTTACAGTGCACTAGAGTCC AGCAGTCCAACCAATGATACTCAGAACTACCAGGAATATGTGAGACTAAAAGCAAGGGTAGAAAACCTGCAACGTTCACA AAGGAACCTTCTCGGAGAAGATATTGCTCAAATGAATACAACTCAGCTGGAGCAGCTTGAGAATCAATTGGAGGTAGCAT TGAGGAACATCAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTCGCTGATCTTCACAACAAGGAAGCAGTGCTAGTC GAAACTAATCATGTGTTAAGGAACAAGTTGGAAGAAAGTAATAACTCACATAATCCAGTGGTCAGATTGGCTTTGGAAGC TGGAGTGCCTAACATCCATTACACTCGCTTCCCTCCTCAATCAGAGGGGTTTTTCCAGCATATGGGAGTGAATCCAAACT TGCAAATTGGGTACAATCCCAGCCATGATGATGTAAATGCTGGAGCTTCATCCTTAAATATGCATGGATTCGCCTCTGGG TGGATGCTGTGA
Protein sequence (LotjaGi4g1v0256500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGKVELKRIENKINRQVTFAKRRNGILKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSIMKTLEKYQKYSYSALES SSPTNDTQNYQEYVRLKARVENLQRSQRNLLGEDIAQMNTTQLEQLENQLEVALRNIRSTKTQFMLDQLADLHNKEAVLV ETNHVLRNKLEESNNSHNPVVRLALEAGVPNIHYTRFPPQSEGFFQHMGVNPNLQIGYNPSHDDVNAGASSLNMHGFASG WML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 60 | 60 | 5.8E-42 | ||
| ProSiteProfiles | 1 | 61 | 61 | 33.922 | ||
| CDD | 2 | 78 | 77 | 8.89074E-46 | ||
| SUPERFAMILY | 2 | 85 | 84 | 7.59E-34 | ||
| PANTHER | 2 | 192 | 191 | 2.4E-97 | – | |
| PANTHER | 2 | 192 | 191 | 2.4E-97 | – | |
| ProSitePatterns | 3 | 57 | 55 | - | ||
| PRINTS | 3 | 23 | 21 | 8.7E-33 | ||
| Pfam | 10 | 57 | 48 | 1.1E-25 | ||
| Gene3D | 13 | 77 | 65 | 1.1E-28 | ||
| PRINTS | 23 | 38 | 16 | 8.7E-33 | ||
| PRINTS | 38 | 59 | 22 | 8.7E-33 | ||
| Pfam | 84 | 170 | 87 | 2.9E-25 | ||
| ProSiteProfiles | 86 | 176 | 91 | 14.148 | ||
| Coils | 93 | 113 | 21 | - | – | |
| Coils | 116 | 143 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0256500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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