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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0272400 |
| Transcript ID | LotjaGi4g1v0272400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thylakoid lumenal 16.5 kDa protein, chloroplastic; TAIR: AT4G02530.2 chloroplast thylakoid lumen protein; Swiss-Prot: sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein, chloroplastic; TrEMBL-Plants: tr|A0A1J7I2Z4|A0A1J7I2Z4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0272400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64012730..64021574) extracted from Lotus japonicus Gifu genome v1.2.
AAAGATTGAAAATGATATGGAAGACAAAATAAAGTATGAATGAATTAAAATACTTTTTATTGGAATTTGGAAGAAATTGT TGCCACCACCATGGATGAGAAATTGTACCACCAGGTGCTTTTGAATGACTACATTACCCTTCATGATCTAGAAAAATGAC TGGATCAGGTTACAGAATCCATCAACCTTATCCTCCAAAGGTTCCAACTTGCCATCTCTTCTGAATTTTCAGGCCCAGAA AAGTAAAAAGAAAAGGAAAGAGGAACAAAGAAGAAAACAAGACATGGCAACAAATATTCTCTCAACTGCAAACCCATTCC TTCTACCATCATCTTCATCATCACCATCATCCTCACCCTCTTTGTCATCAGCAACACTAACACATGTTCATCACCACATC AAATGCAGTGTGAAAAGGCAATTAACTCTTTGCAAAGCAGTGAACCAGACAGCACTTCCAACTTTGACCAAAAGAGACTT GTCCATCAGTTTTTTCACCAGCTTTGTGCTTTCATTGGCTGGTAAGGGGTGCTTGGATGCCAATGCAGCAATACTTGAGG CAGATGATGATCTGGAGCTCTTGGAAAAAGTAAAGAAGGATAGAAAGAAGAGACTTGAGAAACAAGGTGTGATCAGTTCA TCCACCAAAGAAACAGGTCTGGTGTTGCAAAAATGACATTTTGTTCTATGAAATTCATTTTCATGTTCCTTTCCTTAAAT TGATTGAGGTCCAGTTTGGAAGAGATTATTTGATATTATATTATGACAGAAACGTTAATGTAAGTATTTGGTAGAGCTTA TGCAAATAGTTTATGACCTGCCTAAAGCTATTTTGAGCTTACTTTCATAAGTTGTTCAGATTAGTTTTAGCTTATGAATA AGAGTTTATGCTTATCCATATATTATTTACATTTTATTTCAATAAGTTTATCATTTGCTTATGAGATAATCACTAATTGC CATAAACACTTGATTATGCTGTTTACGCAAACGCACCCTGACTCTGTTCACCCTGTAATGCTGATGCATGTAAATTTTAA GTTAGATGGACATATTTGGAAGTAAAGTAATTGATCCCAATTCTAGTGGTCAGTGGTCATTTGAACAAAAGTGCTTCATG AACTGCAAGGCTTGGCTTCTTTTTCTATTGTGTGTTTTGTCAAATATTGGCTTAAGTTTAGTTTTAATGCAATGGGGTAA TAGATTTTGATAGTATCACTTAATCTTATATTGATATCAGATATCTCATTTAATGAGTGTGACTTTGTTGATTAAATGGA GGGCTACATTTAAGTGATAACAACTCATTGGATGCAAGTCAAAGCTTTATTACACTAAATCTGCATTAAGAGTAAATTCA TATATTACATTCAATCATCGGTTTCTTTCCTATTTCACAAAATATGAATTGAATCTCTAGTTTCATGGGAAAGGGAACAA GCTTTCAATTGGATTAATAAATCTAACTTATACAGAGCAGTTGTAATTTAGAGTGTGTTTGGAAATAAGCTGGATTCCTG TCTTGGTGCATTGGAATGTCGCTTTTTGAGAAGAAAAAACATGAAAGGAGGGGAGGGGATACATTCTGTTCAACTTAAAA AAAACATGAATGCAAAGTAGAGTTGGTCATCACCTTTAAGATTATAGTAACCCATTTCTTAAGGATCTCAATTCTCAAAT GAACAATAATTTCATCCAACTGATATTAGATAGTATCCCTTGTACTGCGAATAATTTTTTTGTTAGTGATAAGAGGCAGC CTAGAAGAGGGGAGAACTGTATCAACAGAGTTAAGAGCTAGTAGAACATAATAGTGACTTGACACCACATCTTGATCCAA AACCTTAAGTCTATTGACCTTTACTATATATTATCCTTAATTGACCAATATGTGTGACTTCACACTCACACTTGAACTTC CACTATTTTCAAGTGTGGGCTTCAAATGAGTCCCAACATCATATTCCCCCTTTTCAAGTGTGAGAACATGTATGCAGTTC CAGCTTAGGGAATAAAGTGATACATAATTTAAGGTTGGAAGTGGTCACACTGGCTGAGTTCATGTTTCTCCTCCCAAACA TGTTAATCTCAAGAGTGAGATATAAAACTCATGTTTTTATCTCATGATAACTTCTATTCCTTCATTCATGAAACCAAAGA CACCAATTTTTATCAGTAGAATAATAGAAAATTTTCAGGCTGCCTTCTTCTGCACTGAATTCTCTATTTCAGTGCGGGAA AATTTATTTTTTCGTACTGAAGAGTGAAAAATAATTGCAGGGTATCTTCAGGATGTGGTGTACAAACTGAGTGAAGTTGG TCAAGCAATTGAAAACAATGATCTATCTACAGCTGGTTCTGTCTTTGGGAGAGGCAAGGATACTGATTGGGTCCAAAAAG CTAACATAGCTCTGAACAAGGTAAATCCTGTGTCTTAAATGAATGTATTCATTATGAACACTTTTGTTATGAAATCTTTC ATCATAAAAATTAGACTGATAAAAAGGCCGGAAACCTGCATTAAAATTTTGCCATGATAACATCCACAATTATGTACTAA CTTCCATTAATTTTTTCCATCGGTATCTAAATTCTCATATATCTGTATTAGATTCTGAATTTCAAAATGCAATAGAACTG GTACGTTTATTATCATTTTCAAGTGGTAAAGATTAAACCTGTGGTGTGGACAAATTTCAAATCCGGTGGTTAACATCCTC TTAATCTTCATCTTCATATATAAGTTTTGAACTTTTGGCTGATGAATTTTTAGTAGATTTTTTTTTTAAAATTTAATCTT TCCTTTAGTAGTAACCTTTGAACTCTGCATAAAGTAGTTTCTTAATTAGATATCTCATAGTTTCTTGGTAACCTTTGAAC AGCTAAGTTCCAGTCCTGAAGAAAAGTCTGAGGCGGATACATTCAGCTCTTCGATAGCTTCATTGATTTCATCAGGTGAG TTACATGTAATTAGGACTCAAGTTCCACAGAAGACAGAAAATATGCTCCCGCATCCATATATCTTGTCCACCTCTGAGAG TTCTGTTGATATTTTGGTTATCACAAGGAAAATTAAGGCAGTATATGTGCAACCTTGTAGATAGATTTCAATCACAATGC TAACACTTATTCATGGTTTTCTGGCAGTTTCACAGAAAGATGTTGAGTCATCCAAACTGGCCTTTGTGTCTTCGGCCAGC GCATTTGAGAAGTGGACCTCCTTGACAGGGCTGGTTGCTCAGCTTAAGGGGCTTTGATCTTTGATGGAAGCTACAAGACA TTTTACTTCATCTTGATTTATTGAACATATATACAGAGAGTTACATTCATTTTCCCTTCTATTCTGTCACCTAATTGGTG ACTTGTAGCAATCTTACCCTCATACAGCATCAAGAGAAAAAGACCAGCAATTACCATTCGTTTTTAGGAAATTTGAGCTT GGGTGTGAATCTCTCACAGTTGCAATTTTAATGTCACTGAGAATTTGACTGGATGCATTAGTCTTTCACTTAACAGTGCA ATTGCAAGGACTTATTTTGATTTAAGACTACTCTGCAGAAAGTAATCTTAATCAACGCAAGATACTCAAAAATTCACCTT GAAACCTTTGGTTTAACTTCACAACATCTCACCATTTGATCCACGCGTGTGGTTAATGGTAATTATTGTTGTTTATTACT AGACATACAACATAAGCAACATCAACATTCATCAACCAGATAAGATCTGGTACAATAGTTCGGGAGCCAACTGAATATTT AGGATGACGACCTTACACTACTACATGTCCATATCACATTACAGATACAACACAATGCTACCATGGGAACTAGAAGCTAT ACGTCTCTCCAATGCATATACGGATGGTACACCACAGGACTACTCTATAATTGTCTATCGTCATTTCAATAAACAATCAG GTAAATGACATTAACAACATAAACTACAGTCATACTGGGACAAATCTAGACGGGTCAGAATGAGAAAAGAGAGCCCAAGA GTTTATTATCTTCCTTATTAACCGGCTTTGACCTAACTGGTTCAACTTCCATTCACAGTCACCCCTGATTCAGTTTTCTG GTTTATATCATGAACCTTAAAATGTTCTTCATCATTCACCTTTGCTCCTTCTTTGTCCTTGATTTCTCCAGACTCGTGAA TGCCTCTGTCATGTTCCTCTTTGTTCTCTCCTTCCACTTCAATCTTTTGCTCAGTAGTAGGGGCTGCTTCTGATTTCTCT GGTTCCCCAGAGCCATCATCTTTGTTCTGAACAGCATCAGAACCCTCAGCTCCTTTGTCATCAACTTTCTCTTTTGAGGC TTGTAACTCTTCATCAGCAGTGTTGAGTTTTCCCTCATCGTTAGGTCCATCAGTATTTTCTCCAGGATGAGTGGGTTCTT TGACATCTGCATCCTCTGCTCTCTTCTCATCTTGATTGGCATCTGTAGCCTCTGCTTTCTTCTCATCTTGATTGACATCT GTATCCTCTGCTTTGTTCTCATCTTGATTTTCCTTCACAGCATCTTTAGTTTCACCAGCTTCTTGCATTTCCACATCTTT TGTCTCCTCTTTCTCTTCTTCCCCGGAAGCATCTTTTTTAGAAGCTGATGATCTTTTGCCACGTTTCTTTGGGGGGTCAC TTTCTGGTGTAGGAGTTACCTTGACCTTCTCACTGATTCTTGCTGATCTTCTTGGGGTCTCACCAGTGCCCCAATCAAAT TCTGATGCAGCTGGACCACCAGGATGTGCTTTCAAATACTGCTCTAGCTGCTTCTTGCTAGTGATCTCCTCTCCAGTTGG TGCAGTGAACACAATCTCATTTTTCTTTGGGGTTCCAGACTTTTTTGGAAAGAACTGCAAAGGAGATATAATTTATGAAT CATCTTATATGCAAAAAACTTGTAACAAATTAACAACTGTAATACATACAAACTACACAAGATTTTGGGTAAGTTATTGA CATTCTGCAAATAATCCTCAATGTGAAAAATGAAGCTGTCTTGACTACTTTCATATCATGAGACATTAGACTTGGCTTTG GTGCTCATGCAATTAAGCCACATTTAATGATTTGAATATTAGAAAAGTAGTTTCAAAATTCTGTTTGCTCTCTTTTTTCC CCTTTTTCCCCTTTTTCCCCTTTTTCTCTGCATTATCTGATTAATTCAAATGGTGAACCTTACCTCAAAAAAAAAGCATA TGCATAACTAGTTAAATAACATAGGCTGTTTTAAACTGGCAGTTTTACTGTTAAACTTCAGCAAAAGGGAGTAACATGGT ACTAAATTAACCTTGTTCAGTCAGAAGGCTTTTCTTTCTCTCTTTAATTCTTCCATTCAGGCTACACCTGGGAAAGGTGA AAGGCCATGGAATGGTGTGGAAGAGACGAAAAATGTGAGGACAAGTACCCGAGGCTCATACTGTGACCAAAAGACACAAA AATGCACATGGACTGTATATGAACCACTTACCAATCTAAAACTGCAGTTATAGAAAATAGACAACATCATGTAGTAAGAG GACCCACATTGGTCGCAGGAAATAAGGTAAACAATACTGCCAATACAAACTTACATAAATACCCATTTAGTTTTATATTA TACAAAGACCTCTATGTAGTTTATTTCTCAGAGGGCCTATTTATCTAGGAAAAAGGGTGAGTCTGTGAGGAGCTTAAGCA GTCAATATCACCTCATGTCCATTATGATCACCCTGGACATATGCAATAAATTATGATATAAAATCATATATAGAAAATGT GCAAATTAAATTATTTTATTAAATCATATATAGAAAATGTGCACATCTTGAGGATGAGCTAATGGAAAAGAGAATAGAAC AATCCATAGTCTCACCTTAAAAAAATTGCATAAGGGTCATATGTGTTTCTAGAACATGTTTAATACGGTGATTGAATACG TTTTAGTAAAACTCAGGGAATCAATGTAATTTACTTAAAGAAATATTATAAAGGCTTATTGTCAAGAAATTCACCAACAG TTACATGGTGGGTTTATCCTGTGCACAACATGAGGGGGAAAATAAATGAAAGACTCAAAGCTAATTTTCTGAATGTTAAC ATAATATTAGAATAAATGGATGCAATATGACATTGATAATATTTGAGTATTACTACATGGTAAGAAACAAGATCATTCTT CCAATGAAGAATTATGAATTCTATAATATCGTGTTGTTTTTTGTGTATGGCAAAGATGCATGATAACTATGCAGCTCACA ACAACAAAATAATAAAAACAAAATTAATTTTCCCCACATGATCACAAACCATATAATGTTTAATAGGGATTTCTCTATGC TCATTCAAAGTTAACTACCAAAAGTAGCATAAAATGTTTCATGTAGTAGAATGCAAGACATGTTGTAGAATCTTGCGAAT AAGAGAAAGTATTTCTGAGACCATTACATTTATCTAATAATATTGAATTAAGCTTCACACAAAGTAAAGAGGACGCATAA AAGGTCAAACAAGTGCTGATGAAGTTGATTTCTTTGAAAATAGTACATTAACATAGAAATTGCACTATTTGCATAAGCTT TATGGCTCCTCTTCTTACCACAAGTGTTGAAATATCCAGAGCACAGCTATGCACCAGATCAAATAAGTACACTGTTAAGT CTGAGCCACTAAATTTTTTAAGAGGATGTGTCAACAATCAACCTGAGACATTGGCACCCACTGGCTTATATGTGCGCATA CTTCACATGACTGGGTATTGATATACCATGTGGCTCATGCTCTGGTTAGTGTTGGATTTGCTGACACAAAGCCTGGTGTC AAAGTTCTCAGCTTAAGGTCTATAGACTCTATAATAGTATGCACCACTGTAAAACATTTTCAGTCTAACAAACTATGTGA TGTTTTAAAAATTACTTGAGTCAATAGGGATGATCTATTGAATGAATCGACACCCAGTGATATTTTGAGGTCAATGCTAA GAGGACAATTAGATAATTGGATCACGGTCATACAGCTAGCTAAACACCGAAAAAACTAAACATACTGAACGAACAAACTG TGTAGGCTGTCCACTTCTCAGGACATGTTTACAATTTAAGTGACCTATCTTTTTCACCTTTTTGGGGGGAAGGGGCGTTT GTTAAGCACTTGACAAATGACTCTGATACAAGACTAAAACTACTCATGTTTCCCCAATAATGGCTACTTGTAATTATGTG CTGGCAAATGTAGAATGATAACTTAAATCACAATCCTGGAGTCCAACCTCATCTACTCTAACACAGCCCCAACCATTTTC AGTCAAATCAATTATGCAATGTATTAAAAAATGATTTATTGAAACACCCAACTGGTTATACAAGAATAAAATTATCATGA TCACCCAAGAATGGATATTTGTCAAAGATATCTCCAAAATGTAGAATGATGTATTTACTCACAACAACTGTATCAACGTT ACCCATGTTTTCCTGTCATTTTGGAAAGCAATAACATACTATCATTGTAAAAAGGAAGTTATTTGGAAATTTTTGAACAT AATAGGACTAACTCTAGAACAGATAAATAAACACAACTGAACAGACAACAACACCAGAAATCACTATTATCATGATGGTA AATAAAACACCTCACGCTATACCATATGTGAAAAAGTCACACTTCATGGAATTTCCATGTACAGGTGAAAATATGATCGA TGACAAATCAAGAACAATCAATCCACTTGCATGGTATCCAATACCAAATTAAAAAATTGCAAGACCAGAGTAAGAAATTT AAAAAGTAAGCCACAATATATATATGAGCACAAACTTTTTCAGTCAAAATTATTAGTTAGAAAAGACAATTTCTTGTAAC AATGAAACACCTAAATATAATACTTAGTACAGGCATTCATCAAATCTGAACCCAACCCTTCCAAACAGAGCTAGAATTAT AAGCAGCAGTCTCCAAAAATATTTTTAGAAATGAAAACTGATAACATGAGACACAGTAAGAGTCCATCAAAATCCATTCC CTTACACAAAAATACAGGTCATTAGGTCAATCTACAAAACCCTAGAATAGACTACTAAACACTCAACAGCTAGATAATTC CCCAAATTCAAAGGACAAAAACGCCGAACCCTAAGTCAATTTCGTAAGGCATGTCAGAATTCAAGAAGAAGTAAGTAATT GAAAGAAAAAAAAAATCAAAACCCTAAAATTGAGAATAGCATCTAACCAACGCAAATCGCAAAATCAAACGAAACCCACA TGGAAATTCGAGAGGAAACACGCAATTAAGAAGAAACGAGATGCAAATTGCCCTAAAATTGAGCAGTGAAAGAAAAGGGG GAAAAACAAGGAATGAGAAGTGAAACCTTCTTCTGCCAACCAGATGGAGCAGGAAGCTCCAAAGACACAGTTTCCTCCAC ACCACCTTCAGCTGCAGCAGCACCACCACCAACCTCCTTCTCCACTGAACTCGCCATTTTCACCCTGCCAATTTCCCCCC AAAAAAAAAATCAACAGAAAAATACCAAATCAGTGTATCACAATTTCACCCAAAATTGTGAAAATTAGAAAGATAAAATG ATAAAATTATGAAAATCGAAGAAAGCGGGGGAACAAGAGGAACATACTTGGTCTTGTTTTTGTTTTGGCTTGGTTTGATT TTTGCCTCTGTTCGAGTGTGTGTGTGTGGTGGAGAAAATAGAAGAAACCAAGAGAGAAGAAAATAAGAAATTTTATTTAT TATTTATATTTAATTTATTTATAATAATTGAATTGAAATGAAGAGAGACACGTTGTGGAAGGAATCTCATAAAATTATGC TTCTTTTTCTCTCTAATTTTCCGTGTTGGGCATTTTCAACAATCA
CDS sequence (LotjaGi4g1v0272400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACAAATATTCTCTCAACTGCAAACCCATTCCTTCTACCATCATCTTCATCATCACCATCATCCTCACCCTCTTT GTCATCAGCAACACTAACACATGTTCATCACCACATCAAATGCAGTGTGAAAAGGCAATTAACTCTTTGCAAAGCAGTGA ACCAGACAGCACTTCCAACTTTGACCAAAAGAGACTTGTCCATCAGTTTTTTCACCAGCTTTGTGCTTTCATTGGCTGGT AAGGGGTGCTTGGATGCCAATGCAGCAATACTTGAGGCAGATGATGATCTGGAGCTCTTGGAAAAAGTAAAGAAGGATAG AAAGAAGAGACTTGAGAAACAAGGTGTGATCAGTTCATCCACCAAAGAAACAGGGTATCTTCAGGATGTGGTGTACAAAC TGAGTGAAGTTGGTCAAGCAATTGAAAACAATGATCTATCTACAGCTGGTTCTGTCTTTGGGAGAGGCAAGGATACTGAT TGGGTCCAAAAAGCTAACATAGCTCTGAACAAGCTAAGTTCCAGTCCTGAAGAAAAGTCTGAGGCGGATACATTCAGCTC TTCGATAGCTTCATTGATTTCATCAGTTTCACAGAAAGATGTTGAGTCATCCAAACTGGCCTTTGTGTCTTCGGCCAGCG CATTTGAGAAGTGGACCTCCTTGACAGGGCTGGTTGCTCAGCTTAAGGGGCTTTGA
Protein sequence (LotjaGi4g1v0272400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNILSTANPFLLPSSSSSPSSSPSLSSATLTHVHHHIKCSVKRQLTLCKAVNQTALPTLTKRDLSISFFTSFVLSLAG KGCLDANAAILEADDDLELLEKVKKDRKKRLEKQGVISSSTKETGYLQDVVYKLSEVGQAIENNDLSTAGSVFGRGKDTD WVQKANIALNKLSSSPEEKSEADTFSSSIASLISSVSQKDVESSKLAFVSSASAFEKWTSLTGLVAQLKGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 231 | 231 | 2.5E-88 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosystem II repair | Proteolysis of the damaged D1 protein and re-assembly of a new D1 subunit in the photosystem II following photoinhibition. |
Expression pattern of LotjaGi4g1v0272400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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