Transcript — View — Lotus Base

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LotjaGi4g1v0282400.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0282400
Transcript ID	LotjaGi4g1v0282400.1
Related isoforms 1	LotjaGi4g1v0282400.2
Lotus japonicus genome version	Gifu v1.2
Description	Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1; TAIR: AT2G21380.1 Kinesin motor family protein; Swiss-Prot: sp\|Q7NG51\|SMC_GLOVI Chromosome partition protein Smc; TrEMBL-Plants: tr\|G7JHS8\|G7JHS8_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0282400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:65375695..65378108) extracted from Lotus japonicus Gifu genome v1.2.

CGGCTAGTTTCCATATCAAAGTGACCGTTTGAGAGCATCGTCTCAAAAATTCAAAACCAGGAAAACAAACAACACAGACA CACCACCAAGAGTTGAGTTCTTTTCTAAGCTAGAAATTCTAACAGACACATCCAATTCAACAATCCGAAGATTCAGAAAA AAATGGTGTACTCAAACTACACACCAACCTACTACTCAACACTCCATGACTCAATCACCTCACTCTGCAAGACCCTTCTC CCTTTCAGCTTCAAGAAACGATCATTGCTCTCAGCAGAGCAAAGGTTGTCGAAGCTGCAATCCGACAACCTCAAATGGCA GCAGGAGTCTTTCCACCAGATTTTGAATTTGATGGGTCTTCACGAAGAAGGCATTGTGGCTGAAACTGAGGTTTCAGCTT TCAGAACCCACTTGCTCGAGACTCTCATCGCTTCGCCTCCGGAACAAGAGCATCCTGTTATACTCAGAGACAAGCTTCTG TTTCTGCAGGAGCTTCTGTATGCAAAGTGTGTTTCTGAAGAAGAGTATCATTCTTCTAAGAGACCTTTGCTTCAGAGATT GGCTGTTCAAGGTGCTCAGATTGAGGCTAAGGATGTGATCGTTGGTGTGAGGGCAGTGAGGCCTAGAGAGATTTCGGAGG AAGAGTGGTCGGTTATTGATTTGAAGGATGATAAGGGATTGAAGATGAACAAGGAGAATTTGAATTGTAAGGGAAAATCG AATCAGGGGTCGGGTTTGAAGCAGATTAAAGGGGCAGCCTCGGTTTTCGGCTTTGTTTCTCCTCACAAACCTGGGAAAAA TGGGGTGGAGAAGAGTGCTTTTGAATCACCTTCTTTGCAATTGAGGCAATCCAGTGAAAACCCTTTTTGGAATGCTGAGC CTAATGGCAATAAAAGTGAAGGTACAACAATTCTCATGGAGGAAAGTGGGCCCCCGGAAGCTGTGAAGGAAACCGGTGGC TCGGAGAAGTTGAAGAGGAAGCCATTTAGGACTTTATTTCACAGGGAGCAGAGGGAGGGAGTTGGTGGTGGAAGTGGTGG TGGTGGTCCTGAGCCAGAGCAAAGAGCAGGGAAACCAGTGAAGAAGCAATGGGGGTTTGATGGGTTCAAGAGATGGAAGA GAAATGAGGCAGATGATGAGACTGCTCCATTGCCTCTGAATGAGAGGTCTGATAGTGGGGGACACTCAGCTTCCTCCCAG TCTCTTGCAAGAGTTCATGGAGAGGGACCAGACACCAAGTTGTTGAAGAAGAAGTTACATTCTGATGGTTCTCCATCTGA TTTCTTCATAGATAAGGTTTTAGATCCTTCATCCATCATCTCTTTCTATATTTCAATCTAATTTCCTTTTGAAATTGAGC TAATTTTTGGACATGTTAAACAAAATTCTTGTTCACTGTGAATAGGTTTTGGGAGACAAGATAAAGAAGGAGCTGACAAG AATCCAGACAGAACTTAGCAGCACAAACCCAAATCTTAAATTCTCGTAATTACTTTCCTTGCATTTGGAAAACTGATATT AGTTAGTGCATGTTTGGATACACTATGGAAAATAGCTGTAAAACTAAGATCACGGTGAACAGTCACAAAAGCTAAGGGAA ATTACTTCCATCCATAGTGATTTTAGCTCACCATGTATCCAAACACGCACTTAGTTCTTTGCTTAGAAATGTTACTTACT TTTGGCTGCATTTGTTGTGATATCAGGAATGATCAGATGGAAGCAATTTCTACTAGAATTCCAGTGGACAAGGCTGATTT GAAAAATTACTTTCCTAAGTGAGTCAACATAACCCCACTTTTCATGTTTCAATTTTGGATCACTTGACACTTTATACAGT CTGAGATCAGAGGATTAGTGTTACTTACTGTGTACTTTCTTGTGTTTCTTTTGTGTGTTGAAGATCATGGTGTGACAGAT ACGGTGATGTGGTGCTGGACGTGGTGAAGAAGGAATTCAAAAACCATGTAGGAGAGATGGAGAACATGCGCAATGTTGCT AGAGAAAAACATGGCAGCAACTCAAGGCGGTGGACAACATCTGAGGATGATGAAAATATTCATCCAAATCTTTTTGTTCA TCATGATAATTCAGCTCGCAGCAGTAACATCAATCCATTTTCTCATGGTTATGGAGAGAGCAAGTGGAACTAGATTAAGC TGAAGTCTGAATCAGCTTCTCTAGGAAATCCATATGCAGTAAAGTATTTGTTGTTATATTGTTAAGGCAAGCAAAGAGAC TTGTAAGTACTGTCTAGATCTTCATTGACAATCTTACTTTGATGGTATTAGTCTTTTTCACAGTTCTATCAACTATCAAG CATTTCTAGTGCTAAGCCATGTTTTTTTCACCTTACAATTTTAAATGCATAATTTGATTGTCTGTTTTATTCCTTTCGTT GAAATTTATTTTCC

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0282400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGTACTCAAACTACACACCAACCTACTACTCAACACTCCATGACTCAATCACCTCACTCTGCAAGACCCTTCTCCC TTTCAGCTTCAAGAAACGATCATTGCTCTCAGCAGAGCAAAGGTTGTCGAAGCTGCAATCCGACAACCTCAAATGGCAGC AGGAGTCTTTCCACCAGATTTTGAATTTGATGGGTCTTCACGAAGAAGGCATTGTGGCTGAAACTGAGGTTTCAGCTTTC AGAACCCACTTGCTCGAGACTCTCATCGCTTCGCCTCCGGAACAAGAGCATCCTGTTATACTCAGAGACAAGCTTCTGTT TCTGCAGGAGCTTCTGTATGCAAAGTGTGTTTCTGAAGAAGAGTATCATTCTTCTAAGAGACCTTTGCTTCAGAGATTGG CTGTTCAAGGTGCTCAGATTGAGGCTAAGGATGTGATCGTTGGTGTGAGGGCAGTGAGGCCTAGAGAGATTTCGGAGGAA GAGTGGTCGGTTATTGATTTGAAGGATGATAAGGGATTGAAGATGAACAAGGAGAATTTGAATTGTAAGGGAAAATCGAA TCAGGGGTCGGGTTTGAAGCAGATTAAAGGGGCAGCCTCGGTTTTCGGCTTTGTTTCTCCTCACAAACCTGGGAAAAATG GGGTGGAGAAGAGTGCTTTTGAATCACCTTCTTTGCAATTGAGGCAATCCAGTGAAAACCCTTTTTGGAATGCTGAGCCT AATGGCAATAAAAGTGAAGGTACAACAATTCTCATGGAGGAAAGTGGGCCCCCGGAAGCTGTGAAGGAAACCGGTGGCTC GGAGAAGTTGAAGAGGAAGCCATTTAGGACTTTATTTCACAGGGAGCAGAGGGAGGGAGTTGGTGGTGGAAGTGGTGGTG GTGGTCCTGAGCCAGAGCAAAGAGCAGGGAAACCAGTGAAGAAGCAATGGGGGTTTGATGGGTTCAAGAGATGGAAGAGA AATGAGGCAGATGATGAGACTGCTCCATTGCCTCTGAATGAGAGGTCTGATAGTGGGGGACACTCAGCTTCCTCCCAGTC TCTTGCAAGAGTTCATGGAGAGGGACCAGACACCAAGTTGTTGAAGAAGAAGTTACATTCTGATGGTTCTCCATCTGATT TCTTCATAGATAAGGTTTTGGGAGACAAGATAAAGAAGGAGCTGACAAGAATCCAGACAGAACTTAGCAGCACAAACCCA AATCTTAAATTCTCGAATGATCAGATGGAAGCAATTTCTACTAGAATTCCAGTGGACAAGGCTGATTTGAAAAATTACTT TCCTAAATCATGGTGTGACAGATACGGTGATGTGGTGCTGGACGTGGTGAAGAAGGAATTCAAAAACCATGTAGGAGAGA TGGAGAACATGCGCAATGTTGCTAGAGAAAAACATGGCAGCAACTCAAGGCGGTGGACAACATCTGAGGATGATGAAAAT ATTCATCCAAATCTTTTTGTTCATCATGATAATTCAGCTCGCAGCAGTAACATCAATCCATTTTCTCATGGTTATGGAGA GAGCAAGTGGAACTAG

Download CDS Sequence

Protein sequence (LotjaGi4g1v0282400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVYSNYTPTYYSTLHDSITSLCKTLLPFSFKKRSLLSAEQRLSKLQSDNLKWQQESFHQILNLMGLHEEGIVAETEVSAF RTHLLETLIASPPEQEHPVILRDKLLFLQELLYAKCVSEEEYHSSKRPLLQRLAVQGAQIEAKDVIVGVRAVRPREISEE EWSVIDLKDDKGLKMNKENLNCKGKSNQGSGLKQIKGAASVFGFVSPHKPGKNGVEKSAFESPSLQLRQSSENPFWNAEP NGNKSEGTTILMEESGPPEAVKETGGSEKLKRKPFRTLFHREQREGVGGGSGGGGPEPEQRAGKPVKKQWGFDGFKRWKR NEADDETAPLPLNERSDSGGHSASSQSLARVHGEGPDTKLLKKKLHSDGSPSDFFIDKVLGDKIKKELTRIQTELSSTNP NLKFSNDQMEAISTRIPVDKADLKNYFPKSWCDRYGDVVLDVVKKEFKNHVGEMENMRNVAREKHGSNSRRWTTSEDDEN IHPNLFVHHDNSARSSNINPFSHGYGESKWN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR37392 View details on PTHR37392 Search for proteins/transripts with this domain View external data on PTHR37392	1	497	497	2.5E-238	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	35	55	21	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	231	250	20	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	231	354	124	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	264	283	20	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	301	331	31	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	337	351	15	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	490	511	22	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	490	504	15	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0282400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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