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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0286900 |
| Transcript ID | LotjaGi4g1v0286900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome C oxidase, subunit VIb family protein; TAIR: AT5G58005.1 Cytochrome c oxidase, subunit Vib family protein; Swiss-Prot: sp|Q2M2S5|COA6_BOVIN Cytochrome c oxidase assembly factor 6 homolog; TrEMBL-Plants: tr|I1JGN3|I1JGN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0286900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65912804..65917027) extracted from Lotus japonicus Gifu genome v1.2.
CTAATTTTTGGTCAAATGTTCTTGGACTAATGTTCTTCACATGAGAAACCTTGGTCTTTTTAAAAGCCCAACCCAGCCCA GCCCAGGATAGTGTGTGTATATTGCAAGTCCTTCTCCACAGTCCCTATTTTTGGTGTCACTGTTGTGTTCCCATGGCGCT GGAAGCTTACGCTGCAGGAAACCACGACAAAATCAACGCTGATGTCCTCTCCAAAGCTAGGGAAGCTTGCTACAAGGTAG AAATCTATCTTCTCCTTTTCTCCTTCCACGTAAATGGGTTTCTGTGATTTCTTCTTCTTCTTCTTCTTCTTCATTTACAT GTGTATTAATGGTTTTGAACAAGGCTCGTGATGCTTTCTACGCGTGTCTGGATAAGGAATCTGACAAGAAACCCACAGAG ATTGCATCAGTGGGCTTGATTTACCCTGCAGAATGCAAACGATCGAGGGATGAGTTCGTTAAACAATGCCGATCTTCATG GGTAACAATAACATATAACCCTTTTTGGCTTGTTTGTGAGTTTTGATATTCTGTTACTAAAACTTGATGCTTTTCTTCAT TGGGTATGTTGATCTTGTGCCAGGTGAAGCATTTCGATAGGCAATACTGCCAGAACAAGAGGGTTCAGAGGCTTTTGGAT GACAAAGGTTCAAGGAGAGGTCCGTTGTCGCTCCCACAGTCTACTTTCAAACCCACTGCTTAATTTCAATGAGTCATTCC AATTTCCAGCAGTAGTAGTAGGTTGTTCTGATTTCCCTGATAGCTTAGTTATACATGGTTGGTTCTTTGGATGTACATTC ATGTTGCTGAAAGTGAGAAGTATATGTTTAGTACTAATTACTTATTTGCTAGTCTTCCTAGTCGCTACGGTGAGCTCTTA CAATTGATGTTGGGATTAATGATATTTCAAGAAAAAACAATCAAACAGGAAAAGAAACATCTGTCTCTAGGAGTTACAAC TCGTAGTGCAGAATACTCTTATTTAGGTTGAATTTATTCATGTTGGCAGGGGTATAGAATATACAGATCGTCTTGGCCCC TGTCGAAGATGGGATATCACTTCATGGTCTTTGTATGGGTGGATGTGGAATGCTGATCTGAATTAGTAGCAAACAGAAGT TCTTTGCAGTATTTTTGAATCTTGAGCATTGCTTTAATTTGTGGGTCTAGCATTATAGTGATTTGTTTGGTCCTGATAAC GTGTATTTGTTGCCTCGAGACTTTTGACTATTTGTAACGTGTAATGTAATAAACCTTAGGTATCTTTGCATTAGTTAAGA AAAATATCTGAGATAACACACATCAGGTTTAATATTTTAAGCTTCATGGTTCAAGTCTCTTTTTGCATTTGAGAAAGGTG AATAGTGTTCCTAAAGATCCTGGTTTGAGGCTTTAATGATTTGGTGGTTCATGTGAATGCATTAACTATGTATAAATTTT TTATTTTCATGAAAGCATGCCTATCTAATTCATCTATGAATGCAATGAACACTCTCTTTGTCATGCAAACACTTGGATCA ATGACTAGTTGGTAACGCAGAAGAAATGTAGCTAAAATAGATGAAATATTGTATCGACTATTGATTCTATTAATACATAA AAGTATGCGGACTTATATTTTACTTGCATTACCAACTAGCTTCATAGAGTGTTTAGACATATTTCCATGGTTTAATGAAG TTAGACATCCAAGAATGATATTTTGAGGTTTGCCATGCTGATGAGGAATTTTGGTATAGAGAATTAGAAGATGGTGTTAA GGTATGGAGAGACTAGAAGCAGCTGTCTAGCTTCACTTAACTTCGAAGATACAATAACTTTTTCTCTTTTAGCTTCATAA CTACGCATTTATGTGGGTAAGATCTAAGACCTTACTAGCCCCATGGACACTTAGGGTTAGGGAAATGCTTAGGGCAGCAT GCACATTGATGGGTAACCTTAGTAAAGTTATTATTAGTGTATGTTAGTGTTATATATCTGTTAGTATATTTTAGTAGCTG TCGGTAAGGGAGTTAGTTAGTTAGTTAGTTAGGAAGTTAGTTTAGGAGCTTTGATGATTAGAGAACTTATGCATGTTGCC TATTAATAGGTAGAGGGGGTCGATAGGGAGAGTTATCTAAACAATTAAGAGAGTATTGGGACCTTTAGGCTTTAGAAGGC TTGCAGGTCTTGAAGTTCTGCAGTATCTACCTGTTTAAGATGGGTAATCTCTATTTCCGTTAACAAGATACTCAGTTTTT GTCAACCCTCAATCAGAGAAGAGTTTTGTTTTGTTATTTCTTCTGGGAAATATAACTTGGAGACTGATGCTAATTTTGGA GCTCTAGATGTTAACAGAATTCTTTCAAGTGATAGTGGACAGGTGGTTCTGTATTTAGTCTTATTTGATATAGTTTTAGT TTTACAGATATTTGATTTTTAGTGGTAGCAACTTTGTTGTATGCATCTGTGAGAAATAGAGGGAGTTTTAGTTTTGGTCT CATTGAAAAGACATTGCATTTTGGTCCTTACGATTAAAGAAAATATTGAATTTGTTTCTCACTTGAGACAAAGTTTAGAT GCAGCTCAAGTGGATAGCTCAAGTGGTAGGAGCTGGGGTTATATGGGTTAGGTAGGGGGAGGTTCAGGAATCGATTCCTG GTTGGTGCAATTTATCTTTTCGATGTACAAAAAAAAAGTTTAGATGCAGTGCTTGTGTGTTTGGGAGATGCCTACGTGAC ACATGACATGATGTGTGACGCATTAGTTGAGAAACTACAACCAAATTTTGTCAATTTCAGAGGGACAAAAACTTACTTAA ACCTACAAAATTAAATTTCTCCTCCACCCAAAACCTATTGCCCTCCCCTTCTTTCTTTCTCATCATCACCAATAACACTC AAACTCACACCAAGAACCCAAAACCTATAACCCATAACTCCCTAATTTGACCAATAACCCTTTCCCCTTCAGAATATACT AGAAACCTCTTCCCTCAACATAGCAGTCCCCACACACATATGGAGAGAGAGAGGTGGTGAGTGAGATGATGGAGGGAGAG GGTGAGAAAGGATGCCATAGGGGCGGGTGGGAGTTATGAGTTCTACATTTGAGTGTTCTTTGTGATGGTGGGAGATAAAG TAGAAGAGTAGGAGGGTACGGTTTGAGTGGAGAAGAAAATTTCATTTAATTGGTTAAATAATTTGTTGGTCCCTCTAAAA TTGACAAATGTTCAAGTTTAGTCCTCAACTGACACGGTACCCATCACGCCACGTGTCATGTCACCTTCCACAAACGTGAC AGATGATATGGGTGTGCAAAGTAAGTGCATGTCAGACCCGCTAGTGCTTCGAGTGAGCTTAGCTTCTGGTAATGACCAAA CCCAATATTTCCTCAAATAGTAGGGACAAAAATGCAAAGTATTTTCAGTGAAGGACCAAAACCCATACTCGCTCTATTTA CGGGGAAAAGTATATAATTAAACATAAAATATATCCAAATACTTTAATTAAAAAATAATTTATTTCATCAAATAATTAAT TGGTTAGCTGGTTTTCTAGGTTTTTCCTTTGGTTCTAGCCCCCTGCTTGTTAAGCTTTTGGCCATCAAACATGGTTTTCT TCTAGCTTTTGGCCATTAAACTTTATCTTCTCTCATCATAATTGTTTTGAATAAGATTATTTCTATTACTTACTCACTCT TGGAATATTTCTTTCAAGCACATTCTGAGGGCTGTTGACATGCACTTTTCCTGACTAGTTAGCTTCATTTGGTTTGCATA CGTAATAATGTGTTCTTAAAAATTGGTCTCTTCTGCCAGAGGATTTAGTTACTTTTCTAGTCTCAGATATGTGGTGTTGT GCTACTTATGAGGAACTTTTGGTTTTTTATTTTATTTTCCTTCTTACTCAAAATAAAAATACCGGGGTGCAACGTATACT GAACTGGTTCTAACTATAAACAAACAAGTTTTTATATTTATTTTTATTCGGATTAGGATAAATTATTTTTATTCTTGTCT CCTTCCTCTTGTTCCAAAGACCACTCGCTAACGTGGGATCCTCAACTTTAAACATGGACTTACATCAGCTTATTTTATGT TCAAACGTGGGAACTTCAATATCTACAATGTCCCCTACTTCTGCGGACGCCACTCATTTGTTGCTGCCCATTATCTAGTT TGTTGATTTGTTCCCATTATTATCAACTAATGAGTTATCTATTGGCTATTGGTGTTTAGTAATT
CDS sequence (LotjaGi4g1v0286900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCTGGAAGCTTACGCTGCAGGAAACCACGACAAAATCAACGCTGATGTCCTCTCCAAAGCTAGGGAAGCTTGCTA CAAGGCTCGTGATGCTTTCTACGCGTGTCTGGATAAGGAATCTGACAAGAAACCCACAGAGATTGCATCAGTGGGCTTGA TTTACCCTGCAGAATGCAAACGATCGAGGGATGAGTTCGTTAAACAATGCCGATCTTCATGGGTGAAGCATTTCGATAGG CAATACTGCCAGAACAAGAGGGTTCAGAGGCTTTTGGATGACAAAGGTTCAAGGAGAGGGGTATAG
Protein sequence (LotjaGi4g1v0286900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALEAYAAGNHDKINADVLSKAREACYKARDAFYACLDKESDKKPTEIASVGLIYPAECKRSRDEFVKQCRSSWVKHFDR QYCQNKRVQRLLDDKGSRRGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 100 | 100 | 1.0E-52 | – | |
| Pfam | 21 | 92 | 72 | 1.1E-18 | ||
| SUPERFAMILY | 23 | 82 | 60 | 1.57E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. |
Expression pattern of LotjaGi4g1v0286900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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