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LotjaGi4g1v0286900.3

Overview

Field	Value
Gene ID	LotjaGi4g1v0286900
Transcript ID	LotjaGi4g1v0286900.3
Related isoforms 2	LotjaGi4g1v0286900.1 LotjaGi4g1v0286900.2
Lotus japonicus genome version	Gifu v1.2
Description	Cytochrome C oxidase, subunit VIb family protein; TAIR: AT5G58005.1 Cytochrome c oxidase, subunit Vib family protein; Swiss-Prot: sp\|Q2M2S5\|COA6_BOVIN Cytochrome c oxidase assembly factor 6 homolog; TrEMBL-Plants: tr\|I1JGN2\|I1JGN2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0286900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:65915629..65916889) extracted from Lotus japonicus Gifu genome v1.2.

ACTGTTGTGTTCCCATGGCGCTGGAAGCTTACGCTGCAGGAAACCACGACAAAATCAACGCTGATGTCCTCTCCAAAGCT AGGGAAGCTTGCTACAAGGTAGAAATCTATCTTCTCCTTTTCTCCTTCCACGTAAATGGGTTTCTGTGATTTCTTCTTCT TCTTCTTCTTCTTCATTTACATGTGTATTAATGGTTTTGAACAAGGCTCGTGATGCTTTCTACGCGTGTCTGGATAAGGA ATCTGACAAGAAACCCACAGAGATTGCATCAGTGGGCTTGATTTACCCTGCAGAATGCAAACGATCGAGGGATGAGTTCG TTAAACAATGCCGATCTTCATGGGTAACAATAACATATAACCCTTTTTGGCTTGTTTGTGAGTTTTGATATTCTGTTACT AAAACTTGATGCTTTTCTTCATTGGGTATGTTGATCTTGTGCCAGGTGAAGCATTTCGATAGGCAATACTGCCAGAACAA GAGGGTTCAGAGGCTTTTGGATGACAAAGGTTCAAGGAGAGGTCCGTTGTCGCTCCCACAGTCTACTTTCAAACCCACTG CTTAATTTCAATGAGTCATTCCAATTTCCAGCAGTAGTAGTAGGTTGTTCTGATTTCCCTGATAGCTTAGTTATACATGG TTGGTTCTTTGGATGTACATTCATGTTGCTGAAAGTGAGAAGTATATGTTTAGTACTAATTACTTATTTGCTAGTCTTCC TAGTCGCTACGGTGAGCTCTTACAATTGATGTTGGGATTAATGATATTTCAAGAAAAAACAATCAAACAGGAAAAGAAAC ATCTGTCTCTAGGAGTTACAACTCGTAGTGCAGAATACTCTTATTTAGGTTGAATTTATTCATGTTGGCAGGGGTATAGA ATATACAGATCGTCTTGGCCCCTGTCGAAGATGGGATATCACTTCATGGTCTTTGTATGGGTGGATGTGGAATGCTGATC TGAATTAGTAGCAAACAGAAGTTCTTTGCAGTATTTTTGAATCTTGAGCATTGCTTTAATTTGTGGGTCTAGCATTATAG TGATTTGTTTGGTCCTGATAACGTGTATTTGTTGCCTCGAGACTTTTGACTATTTGTAACGTGTAATGTAATAAACCTTA GGTATCTTTGCATTAGTTAAGAAAAATATCTGAGATAACACACATCAGGTTTAATATTTTAAGCTTCATGGTTCAAGTCT CTTTTTGCATTTGAGAAAGGTGAATAGTGTTCCTAAAGATCCTGGTTTGAGGCTTTAATGA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0286900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGCTGGAAGCTTACGCTGCAGGAAACCACGACAAAATCAACGCTGATGTCCTCTCCAAAGCTAGGGAAGCTTGCTA CAAGGCTCGTGATGCTTTCTACGCGTGTCTGGATAAGGAATCTGACAAGAAACCCACAGAGATTGCATCAGTGGGCTTGA TTTACCCTGCAGAATGCAAACGATCGAGGGATGAGTTCGTTAAACAATGCCGATCTTCATGGGTGAAGCATTTCGATAGG CAATACTGCCAGAACAAGAGGGTTCAGAGGCTTTTGGATGACAAAGGTTCAAGGAGAGGTCCGTTGTCGCTCCCACAGTC TACTTTCAAACCCACTGCTTAA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0286900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALEAYAAGNHDKINADVLSKAREACYKARDAFYACLDKESDKKPTEIASVGLIYPAECKRSRDEFVKQCRSSWVKHFDR QYCQNKRVQRLLDDKGSRRGPLSLPQSTFKPTA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR47445 View details on PTHR47445 Search for proteins/transripts with this domain View external data on PTHR47445	1	111	111	5.7E-57	–
Pfam	PF02297 View details on PF02297 Search for proteins/transripts with this domain View external data on PF02297	21	92	72	1.5E-18	IPR003213 Show description in modal box View details on IPR003213 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF47694 View details on SSF47694 Search for proteins/transripts with this domain View external data on SSF47694	23	82	60	2.22E-5	IPR036549 Show description in modal box View details on IPR036549 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	94	113	20	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005739 View details of GO:0005739 AmiGO InterPro QuickGO	Cellular component	Mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.	Subterm of View details of GO:0043231 View details of GO:0044444

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0286900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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