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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0288700 |
| Transcript ID | LotjaGi4g1v0288700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase G; TAIR: AT5G57910.1 ribosomal RNA small subunit methyltransferase G; Swiss-Prot: sp|Q3ZN06|NS1AB_HASV4 Non-structural polyprotein 1AB; TrEMBL-Plants: tr|G7JFL7|G7JFL7_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0288700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66094624..66097675) extracted from Lotus japonicus Gifu genome v1.2.
AAAACACTCAATCCACCCACCCTCCAAAGCCTAAAAATAAGGTTGCAACCAAAGAACAACTGCTATAGAATAGCAGCAGA AACCTTTACCTTTATTTTTTTTTTTCCAGCCCCTAACCTATCTATCTATCTACCTTGAAATTCAATACAATATCTTTCTC TTTCTATGTATATGTATATCCCTCTGACCCATTCTTTCTCTCTCTACACAGGAAATGGCAAATCCAATGAAAGAAGAAGG AAAATGGAACACAAACAACAACAACCTCTTTCTTTCTCTCTCATCAATGGCCCAGCTGGACCAAAATTTATGTTTGAAGA AACAAAAACAAAAAAGAAAGAAAGAAGAAAAGAAGATGTGTTGAAATGTCCTCCAACCAAACCCACCTCACCTCACCTCA CCTCACAACTCTCTCTCTCATGAAACCATGTTCACCGATTTGCCCTTCTGCAAGACCCCAAAAAATCCAAATCTTCATCA CTGGTCTTCCAATTTTTCACCGAGTTATGTGGGCTTTTTGGGTTTCTTTCTTTCTTTCTCTTCGGTCAGAGTTAGAGTTT CACACAGAAAAGAAAACACAAAGAACCTTCTTTCTTACCCCTTCATTCATTCACACACACCCTTTTTCTCTCTTTCTCTT TCTCTCTCACGTTTTCTCTTCCACCCCACCTTCTTCTTCTTCTTCTTTCTTCTTCCTCTCTATCTGCTTTTTCACCTTTT GTAGTTGGTTCTTGTGTTCTTCCTTGATCTGATGAAGAAGATGAAAGGTGTTGTTGTTTCCATGGAGTCTCCTTCTGATC TGTTTATGGATCGAAGGGCGATGTTGAGGCACCAGAGTCTCTTGCAGGACTATGAAGATCTGCATAGGGTAACGCCTTGC CCTAGTTCTTAAAGATTGATACTTTTCTTTGTGGGTTTCGCTGGATCTGGTTTTTTTTCTTCCTTTGATGTCTTTGTGGC TTTTGGTTGATTTTGATTTAGGATGATTGTCGTTTGTTTTGATTGAATCTTTGTTTTCTGATCTGATGGGATGGTGTGTT TTCATGTTGATCCTTGTGTTATTTTGTATCTCTTGATTTTATTGAGAATTTCTTCTGTTAGGTTACCTCCTATAAAATTT TGGAGTGTTTGATTGTGATACATATGACACAATAGTCACATAGCTGTCTGTGCCCTTCTGAGTGTTCTTATGTTGTTTTA CATTTTCCAAAGCTTTTGGAGCCATTACATAGTTTTTAATCTCAGCCTCTTGGGTTGTATATTTTGCTGGATATCATATT TTCAGTATGAATTTAGACTTATACATGTTTGGAACTTGATTGTAAACCCAAAACTAATTCTGGGAGAAATTTTGTGAGGG GCTTCTGGGTGTCTGAATTGATTCCAAGGAGAAAAAAACTGATTCAAATAAGCTAGAACCTGAACCTAGGAATTAAGTGG TGACCATTTTTTAATTAGTCTCCTTTTGTGTTGGGACTCGGGGTTCACTTAGTTTAGTTTTGTCTATGATTATAAATTAG GTTGTTTTCTCTTTTATATTTTCTTTCATGCTAGTTTTGTTTGAATTGTTGTAATAGATCTTGCCAATCTCATCCATGAG ATTTTTGAAGAATTTTTCTCATTATATTTTGTAATGTTCAGGAAACTGAGGCCATGAGAAGGAAATTGCCAGCTATCAAG CAGAAGAAGCTGACACTTTCTGCTGACGTTCGGTAATGTCCTTTCCCTGAATACTAATGGTTTTAAATTTTCATGTGTTT GTAAATCCTTCTAGAATTGATTCGAATGCCGAAATCAATTATGTTGAGAAGCTTACGTGAGTAGCTTCATTTAATTTATT ATCCGTAGCACTTACGCTGAGCACAATCTCTCTTGAACTGCAGTTTTTTGAGGCAACGTTACCAATACTTACTAAAGCAT CCTCTACCCAAGCCTCAGCCAAAGCAACAAGTTCTAAAGCCGCAAAAGATCAAAATCCAAGCGCCAACTATCCCAAAGGG AAGGAATTACAACAGGAAGGAATCTACTTTGCGACCCCCTCGCATTGCTTCTAATATGAATCCTCCAAAAGAAAGGAGTT CCAATGGTGGGGTTGAAAACACATTGCAAAAGTCTGGCCATGTGTTTGATTTAAACCAAAATGCTAGGAATTCTAGTAAA AAAGATGCTTCCTTTCACAATTCTGCTCCTGTGCTTGACTTGAATCATGATAGGATTCACAGTGGGAAGGAAACCAGTCA AACCACAAAGAGTAGTGCTCCGTTTTTCGACCTGAACCAGATTTCGGTAATTAATTGCACATGCCGTGTTTACATGTTGA GTCCTTGTTTATGTTTGGTTCTAGTATACTTATACTTCCCATCTGTTTTGTTACTGTGCAGAGAGAAGAGGAGGAATTAC AGGGAAACACTGAGCCGTTGTGGATTGAGGAACCAAAGAGAAGTGCACTAAGAGTTGTGAGTGAAGAGCAACTCAATGAT GTGAAGCTATCAGTTTGTAGGAACATTGGGGATGGACCAAGTAGGGCAGTGAAAAGAAAGATTTCATGGCAAGACCAGGT GGCATTGAGGGTTTGATCCTAGTACAGTAGGCTGAACTCCTTGTTTGCCACTTTGAAATGTGTAGTCAATCTGAATCTGC CTTGACTTTTAGCAGTGTACTTCGTTCACCAAAACCATTCTAGTTTTATGTTTCATCTTGTAAAGATAAAATATACCTTA TAGATATGCTCAATATATGTTTTAGATGAAATGGAAAATTTATAACCAGAAATCATGTATTTCTTGATTTATCTTTTGCA CAAGTTAGTCCAAAATTGGATTTGGATTCTATGGTTGATAGCATGTTTCTATCAACTTATTTTTCCTCAAAATCAATTAT GTATTCAGAATCTTTTTGTACTTGTTTAGATCCTTAGGTTTTGTTCCTCTTTGTGGCCAGTTTTGAAGGCTTGGTGCTGG GGTTGGTTGCTTTGTCTATGATGTCTATACATTAGTTCCACTTCCACCTAGTAACTCTGCATTGGTCCTACTCAATATTT AAATTGCATAAC
CDS sequence (LotjaGi4g1v0288700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGATGAAAGGTGTTGTTGTTTCCATGGAGTCTCCTTCTGATCTGTTTATGGATCGAAGGGCGATGTTGAGGCA CCAGAGTCTCTTGCAGGACTATGAAGATCTGCATAGGGAAACTGAGGCCATGAGAAGGAAATTGCCAGCTATCAAGCAGA AGAAGCTGACACTTTCTGCTGACGTTCGTTTTTTGAGGCAACGTTACCAATACTTACTAAAGCATCCTCTACCCAAGCCT CAGCCAAAGCAACAAGTTCTAAAGCCGCAAAAGATCAAAATCCAAGCGCCAACTATCCCAAAGGGAAGGAATTACAACAG GAAGGAATCTACTTTGCGACCCCCTCGCATTGCTTCTAATATGAATCCTCCAAAAGAAAGGAGTTCCAATGGTGGGGTTG AAAACACATTGCAAAAGTCTGGCCATGTGTTTGATTTAAACCAAAATGCTAGGAATTCTAGTAAAAAAGATGCTTCCTTT CACAATTCTGCTCCTGTGCTTGACTTGAATCATGATAGGATTCACAGTGGGAAGGAAACCAGTCAAACCACAAAGAGTAG TGCTCCGTTTTTCGACCTGAACCAGATTTCGAGAGAAGAGGAGGAATTACAGGGAAACACTGAGCCGTTGTGGATTGAGG AACCAAAGAGAAGTGCACTAAGAGTTGTGAGTGAAGAGCAACTCAATGATGTGAAGCTATCAGTTTGTAGGAACATTGGG GATGGACCAAGTAGGGCAGTGAAAAGAAAGATTTCATGGCAAGACCAGGTGGCATTGAGGGTTTGA
Protein sequence (LotjaGi4g1v0288700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKMKGVVVSMESPSDLFMDRRAMLRHQSLLQDYEDLHRETEAMRRKLPAIKQKKLTLSADVRFLRQRYQYLLKHPLPKP QPKQQVLKPQKIKIQAPTIPKGRNYNRKESTLRPPRIASNMNPPKERSSNGGVENTLQKSGHVFDLNQNARNSSKKDASF HNSAPVLDLNHDRIHSGKETSQTTKSSAPFFDLNQISREEEELQGNTEPLWIEEPKRSALRVVSEEQLNDVKLSVCRNIG DGPSRAVKRKISWQDQVALRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 261 | 261 | 1.4E-77 | – | |
| PANTHER | 1 | 261 | 261 | 1.4E-77 | – | |
| Coils | 27 | 47 | 21 | - | – | |
| MobiDBLite | 101 | 137 | 37 | - | – | |
| MobiDBLite | 113 | 137 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0288700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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