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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0291700 |
| Transcript ID | LotjaGi4g1v0291700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF688 family protein; TAIR: AT5G53030.1 hypothetical protein; Swiss-Prot: sp|Q9M160|Y4095_ARATH Uncharacterized protein At4g00950; TrEMBL-Plants: tr|A0A072VE41|A0A072VE41_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0291700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66335496..66337605) extracted from Lotus japonicus Gifu genome v1.2.
CTTATCCAACAATGAAGTCAAAGTGGGAGGGACCCTAGTTGAGGGGTCATTCATTCCATCAAACAATAAAAGAAAACGCG CATCTTGTTGTGAACAAGAAGCGCCCTAGGACATGCAGGAGCGTGCTCTCGTGAAAAATATTCACACTCGATCATTGCCC CCTCTCTCTCTATAAAACCACAACACGTACATGGCAGGCACAACGAACTAATTCACTAGCTACTAGCACATAAAAAATCA TGAAGAAGCTCGATCATGATATTCAAGAACAGGAGGAGGAGCTAACAACACCGCCCAAGCTCTGTCTGCTAGTGACACGG CCGTACACGGCGCCGGAGGCTCCCACGCCGCCGCCTCGTACGGCGGCTTCAGTTCCGTTCCAGTGGGAGGAAGCACCGGG GAAGCCTAGGCCCTGCCACACACGATCTGAGCCGGCAGGTAGAGGAGGTGGTGTTTCCAGAGCACTGGAGCTCCCTCCGA GGTTGTCGTTCATGGAGAATAATCATAATAAGGTTTCCGTTTCCCCGACAACGGTGTTGGATGGTCCTTACATTGGACGC GCCGTGTCTTTTACGATGTCGCACAGGAGCTCCACCAGAGACACCGAGGAGAGTTCCAGTTTTGGGTCTACCAGGTGGTT GAAGAAGAAAAAGAGCAACAGGGTGAAACGTGAGGGTAGTTTTGACTTTTCGAGTTGGAGTGTGGATGGCACCAGTAAAG TGAAGATCATGAGGGTTAGGAGAACAGGAAGCTTCTTGAGTCTCTCTCGTGGAACTTCACATTTGTGGGTATGTATGCAT TATGTCTCTTTCATTTCACAATCTCATTTCTCTTGAGTCTCCTTCAACAACCCTTAATAAAGTTTCATTCACACTTTGCA AATACGTCCATGTGGTGAAAATATGAATCACAGATATAGGAATGAAAGATAAGATCTTAAGAAGAGAAAAATAGGAAGAT AATATAATAAAAAATGAGATGGATTAGAAAGTGAGGTTTAAATAAATTAGAATTTTGAAAATTCCAAAATAATATTTGGT CTTAGCATGAAAAATCAAGTTTTGTACACGCCTTCAACCTCTACACTTTTAGAGAGATATATAAATGAAGAGAGAGGAGT GAATAATATGATATATTATGGAGGTTGTTTACATGACCCATGATAAATTTTTGGTTAAATAACTCATCATCCAATTACAT TGGAGATAAGTGAGTTGGAATTTTTATATTTTGTTTATTAATTTATTTCCAACTCATTTATCTTCAATGTGATTGGATGA TGAGTTATTTAACTCAAACTTTATCATGAGTCATTTAGACAACCTCTATATTATGTGATAAAAACAATAAAAAGATACTG GAAGAAAAAACTAGAAGGAAATGAATTTTAAGAGAAATTAACTCTAAGCAACTGCATTTTGAAAATATTGTTCCTTTTCT TCTTCTTGGCCGCAAAACTATAGTGTCATCACTTTGCAGTAACAAAACTCTTTCCCATTTTCTTTCTAAGAGTAAAACTA TTGAAACATTCAAGCAGCTGATTTGGGACCGAAAAGCTAGCTTTGGCTGCATTATGATTTATGATAGATAGATAGCTACC GAAAGAGCATTGTTTTAATTTTGCGGTGACTTATGGTGTTCTTTGCGTATTGATCTGTTATTATAACTGCAGGCAAACAT TTATGAAAGCTTTAAGCAAGTGGTCCCATGGAGGTGCAGGCAAGAAACGCAAGGCAAGCAAAATTGACGTCGTTTCATGC ATGTAGTGGCGGAACCAGAAATTTAAGGAAGCCTAGGCAAATTTTATGATTAAGTCCCTATATTTTTTCCTACCTTTCAA ATTTTGCCTAATCTCTCTTTTTTTTTTGGCCCAAAAACCTACCTGATCCAAAGAAAAATAAAAATAAAATTTATTGGAGC CCAGACATAGGCCCTACCAAGCTAGGCGATAGTTCCGCCTCTGCATGCATGTGATCGTCGACTTATCCGCACCTTTACCG TACTAGCTAGCTAGCTACATATTTTCAAAGTACAATACCATTGCTACTTGTAAAGGAACAGGAGCAAGAATATGTGTAGA TGTCAAAAATATAAATTAATTCCAGTTATT
CDS sequence (LotjaGi4g1v0291700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGCTCGATCATGATATTCAAGAACAGGAGGAGGAGCTAACAACACCGCCCAAGCTCTGTCTGCTAGTGACACG GCCGTACACGGCGCCGGAGGCTCCCACGCCGCCGCCTCGTACGGCGGCTTCAGTTCCGTTCCAGTGGGAGGAAGCACCGG GGAAGCCTAGGCCCTGCCACACACGATCTGAGCCGGCAGGTAGAGGAGGTGGTGTTTCCAGAGCACTGGAGCTCCCTCCG AGGTTGTCGTTCATGGAGAATAATCATAATAAGGTTTCCGTTTCCCCGACAACGGTGTTGGATGGTCCTTACATTGGACG CGCCGTGTCTTTTACGATGTCGCACAGGAGCTCCACCAGAGACACCGAGGAGAGTTCCAGTTTTGGGTCTACCAGGTGGT TGAAGAAGAAAAAGAGCAACAGGGTGAAACGTGAGGGTAGTTTTGACTTTTCGAGTTGGAGTGTGGATGGCACCAGTAAA GTGAAGATCATGAGGGTTAGGAGAACAGGAAGCTTCTTGAGTCTCTCTCGTGGAACTTCACATTTGTGGGCAAACATTTA TGAAAGCTTTAAGCAAGTGGTCCCATGGAGGTGCAGGCAAGAAACGCAAGGCAAGCAAAATTGA
Protein sequence (LotjaGi4g1v0291700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKLDHDIQEQEEELTTPPKLCLLVTRPYTAPEAPTPPPRTAASVPFQWEEAPGKPRPCHTRSEPAGRGGGVSRALELPP RLSFMENNHNKVSVSPTTVLDGPYIGRAVSFTMSHRSSTRDTEESSSFGSTRWLKKKKSNRVKREGSFDFSSWSVDGTSK VKIMRVRRTGSFLSLSRGTSHLWANIYESFKQVVPWRCRQETQGKQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 15 | 204 | 190 | 1.8E-43 | – | |
| Pfam | 28 | 124 | 97 | 2.5E-4 | ||
| MobiDBLite | 49 | 73 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0291700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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