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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0293100 |
Transcript ID | LotjaGi4g1v0293100.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein flx-like 1; TAIR: AT1G67170.1 sarcolemmal membrane-associated protein; Swiss-Prot: sp|Q84TD8|FLXL2_ARATH Protein FLX-like 2; TrEMBL-Plants: tr|I3SVM3|I3SVM3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0293100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66505967..66508998) extracted from Lotus japonicus Gifu genome v1.2.
CAAATATTTTCAATGTCATCGGAAGCATGCGCACACAAAGGCTAACTCGATGCATACTTTTGCCAAAAATAGGTTGACTT TGCTTATTATGTCCACGGATACTAGGGTTAATATTCAATTCTTATAACGCTTATGATGTAAGAAACTAGTTACCTCTTTT TCCGGCGCCTTTTAGCCCTTTTACTATAATAATAAATTTAAAGACATCCATGTTTTTGCAAGGATTATTTTTTTAATCTT GTGTTGAGGAAAAATTGTTTATTCGTAAATTAATATTGTTCTCTCTGGTTTGCTGAGAGGGGTGCCCGGAGACTGGTGAA GCTCGCCGTGGCCATTCCCTTCCTCCGCCGTAAGTCTCTCTCTCTCTCTCTGCAATTTGCTTTAACTTCTCTTCGACCCA TCCCCAGTTTCTTTCCTTTCTTAAAGACTTTTCGTTCTGTGATGCAATTTTTCAATTTCAATTTTAGGTTGAACTATACT CTCATCGTTTCTGGGTACCTTCTGATACGATTTCAGGTGAATTTTTCTTTGCCTATTCAATTTGTATTTGCCATTTATCA TGTGAAATTGAGCTTCACTCTATTCAGTTTTGAAACTTTTCTCTGTAATTTGAAAGCTTTGAGTTTAGCAATCAAATTAA TCAATTGCATTCTGAAATGAGCATGCCCATCACTTCTAATCTATTAAAAGGAGTAAAAATATTATCTTTTTAATGCTTAC TCTGACCTTGATCTTTGGGGAGTTGTGGGTATTTTTTTATAGTTTTGCAATTTTGAATTTTGGTTATCAACATGGATATG GCTTTGTTTGTTATACTCTCATTGATTGGAGTAGTTGGTATTTGCATTGCAGGTACCTGGGGAGAATTGGATATTGAATT ATTGATGTTTGGGTTTTAGCATTAGTACAAGTTCATACTGTAATGAATGGATGCTAGGGGCAAAGTTCCGACATCATCGT TTGAGAGGCACCTCGTGCAAGCTTCTGGGATGATGCGGCATGGTCAATTACCTGGTTTAAGTTCTTCTTCTGCTGTTGCT GCTGCTGCTGCTGCTGCTTCCCATCGCTCTCTGGAGTCTCTGCCTCAGTCGCATCTGTTGGAGGATAAAGTTGCGGATCA GGAAGAAGAAATAGAGCGACTTGCTGGGGATAACCGTAGACTGGCAAAGACACATGTGGCTTTAAGAGATGATCTTGTTT CCGCTGCACAGGATGTGCAGAAGCTCAAGTCACACATTAGAAGCATCCAGACCGAAAGTGACATTCAGATTAGAGTTTTG CTGGATAAGATTACTAAAATGGAGGTGGATATTAGAGCGGGTGATAGTGTCAGAAAGGACCTCCAACAGGCCCTTATTGA GGCACAGAGCTTGGCAGCTTCCAGGCAGGAATTGAGTGCCGAAATTCAACGAGCCGCTCTGGAAGTGAAGAAGGCCATTA GTGATGTTAAGAGTTTGCCGGATTTGCAGGCTGAACTGGATGATTTAGTGCAAGAACGTCAGAGGTTACGGTAGGTATTG AAGTCTGTTTAAGTTTGTTGTTTGGCATTTTACACCTGCATGTAGATCAGAACTGATTCTAGATTCTTCAGGGTATATAA TTAATTTTGTTATAATGCAGTCTTAGTTGCCTTTGTGGAAACTTGTTTTCATTGTAGAACTTGTCGACATTGGTTGATCC ATCATCCATGTGTTGCAGATCTTGTCTATTAGAAAAGTCATTTTGTTTTTGTTGTTATATCATTAGAGTGAACTTTCAAG CACACTGTTCTAAAAGCAAAAGCTGCATTGCTTCTGCCCCTCCCCATAAATAAAAAAAAGAAGGCATGAATATTGAAAGG TGAAGAAACAATAAAAGTTATATTGTTGGTTTTTCTTCTGTAAGTGCAGTGATGGCAAATTTAGGTGCTGTATGCTGCTG TTCCTTTCATCAAATTGTCTAATCTTGATAGAATGTGACTACTTTCAACATATGGCCTCTTATCAGTTTCACGAGTGGCA TAATAGTTTTACTCACCTATTGTTATTGTCATTATATACTTAGGTGAGACCGGAATGAGATGGAATGGAAGTTAGTTCAA AACTTGTATGGAGGACTGCTTAATCACTTGAGTGTGTGACAAAGTTGTTGTCTATATCTATTAAATCATGCTTTAAGCGA ACGCTTGCTATTCCTTCGCACCATCATGTCGCATATATTCTCTTGTTACAGTTTGTTGCTCTTAATTATTTATCTTTCTT CTGGTAACTTATCTGGTAATTCTTTATATAATAGTTCCACATTCGAATATGAAAAGAGCAAAAACATAGAGCTGGTGGAT CAAATGAAAATAAAAGAGAAGAATCTAATTGCAATGGCAAGAGAAGTCGAAGTTTTACAAGCTGAGATTTTGAATGCTGA GAAAAGAGCAAATGGTAACTTCCTGACTTTAGTATGTTGTTTTTGTACATATATATGATTCTGATTCATTGTTGCTATGA AAACAGCACCAAATCTGTTTAGAGCTACTACACCTGTAGACGGCAGTGGTTCCTTCTCTGATCCTTATGGGAGAGCTCAT GGTCAGATGGCTACTGCCCAAGTAGGAGAGACTATGGCACCAGTTGTTGATAGCAATGGAGTAGCAGCTATCACTAGTGG CAGCGGTGGCGGTGGTGATGGTGGTGGTTGGGCATGATCCTTCAGTTGCTGGGAGGTGAAGTTCAAGGAGTGAACTCTAT CAAATCCTGCTTGACTTTAGCTTTTGTTGGTACCATACTTGGAAAATTGTCGTTTTTTCTATGTACATCTAACAGATGTG TAGCTTTATCTGTAGCAACATTCTGTTTAATTTATTATACTTTTGTTAATTTTGAATCAAGTCTGCAAATTTAAAAGGTC AAAGATCTTTCTCTCTCAACTTATGGTATGGGGAGTTGCAACTATTGTCAAGCTTATCCTATGCAATGATGCAGTGAAGC ATGTTACTTTTTTTTTCAAGTTTTTATACCTGAGAACGCAGTCCTATGTTTTGGTGTGAATATGATACCATG
CDS sequence (LotjaGi4g1v0293100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCTAGGGGCAAAGTTCCGACATCATCGTTTGAGAGGCACCTCGTGCAAGCTTCTGGGATGATGCGGCATGGTCA ATTACCTGGTTTAAGTTCTTCTTCTGCTGTTGCTGCTGCTGCTGCTGCTGCTTCCCATCGCTCTCTGGAGTCTCTGCCTC AGTCGCATCTGTTGGAGGATAAAGTTGCGGATCAGGAAGAAGAAATAGAGCGACTTGCTGGGGATAACCGTAGACTGGCA AAGACACATGTGGCTTTAAGAGATGATCTTGTTTCCGCTGCACAGGATGTGCAGAAGCTCAAGTCACACATTAGAAGCAT CCAGACCGAAAGTGACATTCAGATTAGAGTTTTGCTGGATAAGATTACTAAAATGGAGGTGGATATTAGAGCGGGTGATA GTGTCAGAAAGGACCTCCAACAGGCCCTTATTGAGGCACAGAGCTTGGCAGCTTCCAGGCAGGAATTGAGTGCCGAAATT CAACGAGCCGCTCTGGAAGTGAAGAAGGCCATTAGTGATGTTAAGAGTTTGCCGGATTTGCAGGCTGAACTGGATGATTT AGTGCAAGAACGTCAGAGGTTACGTTCCACATTCGAATATGAAAAGAGCAAAAACATAGAGCTGGTGGATCAAATGAAAA TAAAAGAGAAGAATCTAATTGCAATGGCAAGAGAAGTCGAAGTTTTACAAGCTGAGATTTTGAATGCTGAGAAAAGAGCA AATGCACCAAATCTGTTTAGAGCTACTACACCTGTAGACGGCAGTGGTTCCTTCTCTGATCCTTATGGGAGAGCTCATGG TCAGATGGCTACTGCCCAAGTAGGAGAGACTATGGCACCAGTTGTTGATAGCAATGGAGTAGCAGCTATCACTAGTGGCA GCGGTGGCGGTGGTGATGGTGGTGGTTGGGCATGA
Protein sequence (LotjaGi4g1v0293100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDARGKVPTSSFERHLVQASGMMRHGQLPGLSSSSAVAAAAAAASHRSLESLPQSHLLEDKVADQEEEIERLAGDNRRLA KTHVALRDDLVSAAQDVQKLKSHIRSIQTESDIQIRVLLDKITKMEVDIRAGDSVRKDLQQALIEAQSLAASRQELSAEI QRAALEVKKAISDVKSLPDLQAELDDLVQERQRLRSTFEYEKSKNIELVDQMKIKEKNLIAMAREVEVLQAEILNAEKRA NAPNLFRATTPVDGSGSFSDPYGRAHGQMATAQVGETMAPVVDSNGVAAITSGSGGGGDGGGWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 275 | 275 | 6.7E-92 | – | |
PANTHER | 1 | 275 | 275 | 6.7E-92 | ||
Coils | 55 | 82 | 28 | - | – | |
Coils | 139 | 173 | 35 | - | – | |
Coils | 177 | 197 | 21 | - | – | |
Coils | 212 | 239 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0293100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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