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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0296600 |
| Transcript ID | LotjaGi4g1v0296600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CONSTANS-like protein; TAIR: AT5G57660.1 CONSTANS-like 5; Swiss-Prot: sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5; TrEMBL-Plants: tr|A0A0L9TF49|A0A0L9TF49_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0296600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66991676..66994435) extracted from Lotus japonicus Gifu genome v1.2.
TCTAAAACATCAGTGTCTTGTGGGCCTGTGGACTGATATAGGCGAACCGGGTCATTTATTTTGGGCTTATCACTATCATG TAACAAATGGGCCGGGCAACCCATGGTCCAGCCGGACCAAAACTCAAGTTATAAATAGAAGAGGACCGCCCAAGCGGCAG GGACCCTATCATTTTTATGCATTTTTACTTATCTTGTTTACTTTGTGTTCGCTCTCTATTTCGATAAGCCCGCTCAATGG TTCCATACCGGAACAGAGTTGAAAAGAAATAGTAATAATTATCCTGTTGAATGAATCCTTTCCTTTCCTTTGCTTTTACG AGGGGATGGAGCTGATCCTCGTGGTCTTTTGTTTCCTTTACTGCCCATTTTTATAAAAGAAAGCCTGATTGCATCAAATG TCCGTGGAGGCCCCACGTCGGCACAGACACAACACGATGACAACTGCTACTCCCCAATCGATATCTCCTTCTAATATCTC CCTTGTTCTAACGCCAAAACCATTTACATGGACAATACACAGCCACGTGTTCCTTCTTCACTTGTCATTACCTAGATTTC CTTTCTAAATGCCCACTCACTAACTATAGATATTACAAAAACCGCACCCAAAGATATCAAACTCACCCAACTTTCATTAC CACTTAGTTTTTTCATACTCCTCCCTCCTAATCCCTTCCATTCCCAACAAGCACTAGTTACATTCATTGGCCTAGTTTTC GAAGCGCGTTTTCCCATAAGTGATTTTGCTTTTCAGTTAAGCACACTGAAAAGAAAGGATAATGGGACTAGAGGGATTGA GGTCCGGGTGGAGTGTGCCGCCGAAGCCATGCGATTCATGCAAACTGGCTTCGGCGGCACTCTTCTGCCGCCCGGACTCC GCTTTCCTCTGCATATCATGTGACTCCAAAATCCACTCCGTCAACAAACTCGCCTCGCGCCACGAGCGCGTGTGGATGTG TGAGGTCTGCGAGCAGGCTCCAGCTTCCGTCACGTGCAAGGCAGACGCCGCAGCCCTCTGCGTCACGTGCGACTCCGACA TCCACTCCGCCAACCCACTAGCCCGCCGCCACGAGCGCGTCCCGGTGGAGCCTTTCTTTGACTCCGCTGAGTCCATCGTG AAATCCTCCTCCGCCGCAGCTGCCGCTACTGCAGCCTCCTTCGGCTTCGTCGTCCCCACCGACGAGGCCTTCGCCAGCCA CGACGACGCCGACGCGGCGGCCTGGCTCATGCCGGATCCAAATTTCGGATCTAAACTCATCGACGCTCCGGATGTGAAGT CCAGGGAGATGTTCTTCTCGGAATTGGATCCGTTTCTGGATTTCGATTACACAAACTCGTTCCAGAACAATAACAACCAC AACGGCGGAAACGACAGCGTTGTGCCGGTTCAGACCAAACCCCTCCCTCCTCACCCAGCTCCGATGATGAATCATCACAC AGAAGGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCCAGCTCCTTCAATTATCCATCACAGTCTCTCAGCCAAA GCGTAAGTCGTTGATTAATCAACATACAAATTAACTTCCATTGATTGAAATTTTCTCAGATCGAAGAATTTTGTACTGAT TTGATTTGAATCTGCAGGTTTCGTCGTCTTCGCTTGATGTAGGAGTGGTGCCAGATGGGAACGCGGTTTCAGACATGTCA TATTTGAACAGCTCCGATTCGAGCGGGATGGTGGTTTCCGGCGGCGGCGGAAGCCAGCCGGCGACGCAGCTCTGCGGGAT GGATCGGGAGGCGAGGGTTCTGAGATACAGGGAGAAGAGGAAGAACCGGAAGTTTGAAAAAACCATTCGATACGCTTCAC GAAAGGCTTATGCGGAAACCCGGCCCAGGATCAAGGGCCGGTTCGCGAAGCGGTCTGAAATTGACTCGGAGGTGGACCGC CTCTATAGCCCGGTGATGACTGGTTCTCTTATGGTTGACTCTCCATTCGTGGTGCCAACGTTTTAGCAAAAATGAAAAGA AGAGGGTGGAACAATTTATCAACACACACACTCTTCTTGTTTAGTATTATTGTTGCATGTGGTATCTTAGAATAATGATT AGTGATATATTCCGTGGGAAACTTTGATTACTAATTAGGGATGATGAAAAGTGATGATGAATTGGTTCGAATATGAAGAT GAATATGAATATGATGGTGCTGTGGAATCAGGAATGGGAGCATGATGCAAAGAGACTCATGGTGATGGAGTTGAAGATTT GTCTCGCCTAGAAAAGCCAGTTTACTTTGTTTTTTAACTTTAGGGGGAGGTTTCTTTGTTTGGTATTTATTTGGGGTAGA ATTAGAATCTGTACTCTATAAGTGTAAACTCTTTTTCACGGTCTATTTTCAGTAAAAAAAAGGTGTCTTTTTCCAATCGG ATCACGGATCTATTTCTCCATTTCTATTGGGTGGGGCTCCGCAGCTCTATATCCATCTTTCTATGGCTGTCTTAATTTGA CTCCACTAGTTTTATGACTTTATCCATACTTGATGGAAAGAGGCCACCAGTTTCAGCAAAGTAAAGAAAGCATTGCACTC CTAATAAATACACAAAAATCAAAGTTACTATGTAAGTCAACTTTTTATTATTATTTTTTTTTTTGATAAGCTGGATTAAT TTTTTTTATTAAAGTTTTTCCTACCTTTATATCATTAGATTAATCAAGTTATACTTTTAAAATTAAATTGAGCATATTGA TTTTCTTTTACGTCGATGACATTGTCAAGATTTCATATGC
CDS sequence (LotjaGi4g1v0296600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACTAGAGGGATTGAGGTCCGGGTGGAGTGTGCCGCCGAAGCCATGCGATTCATGCAAACTGGCTTCGGCGGCACT CTTCTGCCGCCCGGACTCCGCTTTCCTCTGCATATCATGTGACTCCAAAATCCACTCCGTCAACAAACTCGCCTCGCGCC ACGAGCGCGTGTGGATGTGTGAGGTCTGCGAGCAGGCTCCAGCTTCCGTCACGTGCAAGGCAGACGCCGCAGCCCTCTGC GTCACGTGCGACTCCGACATCCACTCCGCCAACCCACTAGCCCGCCGCCACGAGCGCGTCCCGGTGGAGCCTTTCTTTGA CTCCGCTGAGTCCATCGTGAAATCCTCCTCCGCCGCAGCTGCCGCTACTGCAGCCTCCTTCGGCTTCGTCGTCCCCACCG ACGAGGCCTTCGCCAGCCACGACGACGCCGACGCGGCGGCCTGGCTCATGCCGGATCCAAATTTCGGATCTAAACTCATC GACGCTCCGGATGTGAAGTCCAGGGAGATGTTCTTCTCGGAATTGGATCCGTTTCTGGATTTCGATTACACAAACTCGTT CCAGAACAATAACAACCACAACGGCGGAAACGACAGCGTTGTGCCGGTTCAGACCAAACCCCTCCCTCCTCACCCAGCTC CGATGATGAATCATCACACAGAAGGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCCAGCTCCTTCAATTATCCA TCACAGTCTCTCAGCCAAAGCGTTTCGTCGTCTTCGCTTGATGTAGGAGTGGTGCCAGATGGGAACGCGGTTTCAGACAT GTCATATTTGAACAGCTCCGATTCGAGCGGGATGGTGGTTTCCGGCGGCGGCGGAAGCCAGCCGGCGACGCAGCTCTGCG GGATGGATCGGGAGGCGAGGGTTCTGAGATACAGGGAGAAGAGGAAGAACCGGAAGTTTGAAAAAACCATTCGATACGCT TCACGAAAGGCTTATGCGGAAACCCGGCCCAGGATCAAGGGCCGGTTCGCGAAGCGGTCTGAAATTGACTCGGAGGTGGA CCGCCTCTATAGCCCGGTGATGACTGGTTCTCTTATGGTTGACTCTCCATTCGTGGTGCCAACGTTTTAG
Protein sequence (LotjaGi4g1v0296600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLEGLRSGWSVPPKPCDSCKLASAALFCRPDSAFLCISCDSKIHSVNKLASRHERVWMCEVCEQAPASVTCKADAAALC VTCDSDIHSANPLARRHERVPVEPFFDSAESIVKSSSAAAAATAASFGFVVPTDEAFASHDDADAAAWLMPDPNFGSKLI DAPDVKSREMFFSELDPFLDFDYTNSFQNNNNHNGGNDSVVPVQTKPLPPHPAPMMNHHTEGCFDIDFCRSKLSSSFNYP SQSLSQSVSSSSLDVGVVPDGNAVSDMSYLNSSDSSGMVVSGGGGSQPATQLCGMDREARVLRYREKRKNRKFEKTIRYA SRKAYAETRPRIKGRFAKRSEIDSEVDRLYSPVMTGSLMVDSPFVVPTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 12 | 59 | 48 | 10.054 | ||
| SMART | 12 | 59 | 48 | 1.4E-11 | ||
| PANTHER | 14 | 369 | 356 | 3.5E-134 | – | |
| Pfam | 14 | 56 | 43 | 1.9E-6 | ||
| PANTHER | 14 | 369 | 356 | 3.5E-134 | – | |
| CDD | 16 | 59 | 44 | 1.0656E-6 | ||
| ProSiteProfiles | 55 | 102 | 48 | 11.007 | ||
| Pfam | 57 | 102 | 46 | 3.2E-7 | ||
| CDD | 58 | 102 | 45 | 2.8852E-9 | ||
| SMART | 60 | 102 | 43 | 1.7E-10 | ||
| ProSiteProfiles | 297 | 339 | 43 | 16.787 | ||
| Pfam | 297 | 339 | 43 | 9.4E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0296600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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