Transcript — View — Lotus Base

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LotjaGi4g1v0310300.3

Overview

Field	Value
Gene ID	LotjaGi4g1v0310300
Transcript ID	LotjaGi4g1v0310300.3
Related isoforms 2	LotjaGi4g1v0310300.1 LotjaGi4g1v0310300.2
Lotus japonicus genome version	Gifu v1.2
Description	Alpha/beta-Hydrolases superfamily protein; TAIR: AT3G47590.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp\|Q07379\|YD057_YEAST Putative uncharacterized protein YDL057W; TrEMBL-Plants: tr\|K7LYW1\|K7LYW1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0310300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:68652778..68656179) extracted from Lotus japonicus Gifu genome v1.2.

CTTTCTCTAACACCTTCTTTGTCTAAATTTTCCCATTACCAGGTTCGTTTTTCCATCCCATCCAATCACAAACCCAGAAC CTTCAAATTCAACATGGCTCTAGCTGCACAAATCCCAGGTGTTGAGCAACAGAGACTCATAATACCCAACAAGCACGGTG AAAAGCTAGTCGGTATATTGCATGATTCTGGATCCAAGGAAATTGTAATCTTGTGCCATGGATTTCGGTCCTCCAAAGTT AGTTTCTACTTTCTTCCTATGTTAAGCTTCATATTCTTTTTACCCCAGTTGTTTTCATTGCTTCAATTTTCTTATTTTCA GGAATCTGATTCCTTAGTGAACCTTGCTGGTGCATTGGGAAATGCCAGAATCAGTTCTTTCCGCTTTGACTTTTCTGGAA ATGGGTAATCATAAAATTTGACTTTAACCTTGAATCATGAACATATGCAACAAGTGGCTCTTGGTTGATACAGTAGGTAT TGTGAAACTGGATTAACATCATGCTATAGGTGATAGGTAATAGAAAAAAATAGTTATATGATACATTGATACTTTGTATT CTTCTAATGTTCTGCTTTGAAACAACTTATAGAATTGTAACTTTTGTGCTTGGTGGCTTACTAGAATAAGTTGACAATAG CAGCAAGAAGAAGATTATGTACACAAGACCAAGTTTTTTTTTTTTATAGTATTTAAAGTTTTATGTTGATTGAAGTTGTA TGCGCTAATTATAGCTTTACTATAAACTATTACTTTGTGATTGCATATGAAAACTGGATGGAATAATATGATCACTAAAA CATTACAAAAGTTATGGATCATTAGTCTTGCTTCACTTTATTTTAGGGAAAGTGATGGTACATTTCAATATGGCTACTAT TGGAGGGAGGCTGAGGATTTACATGCTGTAACTCAACATTTCAATGAAGCAAACCGTGTAGTTAGTGCAGTTGTTGGGCA TAGTAAAGGTATATTGACTTGTTCTCCTTATCGGCAAGTGTTTCTGCCAACAAGAAAATGATGAAAAAGATATGTCAAGA TAGCATTTAGGATATTTGTGCTGAGTCTTATAATGACTATTCAATTATATTCCATTATATAATTGATGGCATTATGATAA TTATTCTTGTTTAAGTTATTTCGTGATGGTTTTGTTGTGAAGATAGAAACTTTGAGTGATTTTGTATGAAAAGAGTTGTG TTATTTCTGAAATAAAACCAGGATCTACTTTCGTCTTAGTTGGTACTTGCTGCTGAGCTTATATTTCTGAGCTTCTCAGC AAAAACCTGATACACAGGAACTTGGTTAGTCTTTTCATTTTAACATGGTGTTGAGGCGAAGTAATTTTCTAAAATAGGTA TTATATAGGTTTGGTGAAAATTCATAAACCCCTACTCTATGTGGGTGGTCATTTATTTTCCTTTGTAATCCGTGAAATCT GACTTATTAGTGAAACTTTGACAGATACATCTTCTCAAATGGCTTCTCTCAATTTTTTTTTTGAAGTTTGTATGCATAAT TGAACTATTAATAATTGTAACTGTATCGTGATGTAGGAGGTGGCGTGGTGCTTCTTTATGCTTCAAAATATCATGACATT AAAACAGTTGTCAACATCTCTGGACGTTATGATCTGAAGACAGGAATTGAAGAACGGCTTGGAAAAGATTTTATGGAAAG AATTAGAAAGGATGGTTTCATTGATGTGAAGAGATTAGGTAACTTATCATTTAATCGGACACAAGTTTCAATTCCTTAGT GCAGGAGCATGTTGTAAGAGATAATTGAACAAATGCAGTGTCTATTGATTAAAGATCACTTGTTTTCTACTTTGAACTTA CTGTTTGTGTATTTTCTCAAATCAGTAAGTCCAAAACCATGGCTTATTTTACTTTTACAGTTTACTTTAAACTAAAATTT GGAATTGGGGATTATTATATCATATAAGCTGAAACTTTTTTACTCTTATGATACCATGGTGCTGGTGCATTCTCTTAAAT GTCTGTTAACAGAACGGGCCATAGAGGAAAGACAAAAGACGGGAAAATGAAAAATCTATGCAATAATTATTAACAAATGT ATTCAATACTTGAAAATTGGTAGGAAAACATTATAGATGGCACATGATATGTCATTCTCAGTTTCTGACTGTCTAACAGA TGCACAAATTTATTTTGTTATTGTATGACCCTTTGAGGACATGAACTGTTGCAGGAAGTTTTATTTTCCGTGTGACTGAA GATAGTTTGATGGACCGATTAAATACAAATATGCATGAAGCATGCCTTCAGATTGATAAAGATTGCAGGTGAGGGAATTT TTTACTGGTCTCTTGCTTCACCCTCTTGGTCTCTTTGGCATCACAGCCCCTTTTTTTGCATCTTTTTGTTGATTAATTAT ACGTGTTGAATTTGCAGTGTTTCTGTAAAGCAGAAGCAATGAAAGTTAGGATAATGTGTGTGTAGGGCCAATAATTCCAA ATTCTTCAAACGTACATACTCATTTTAAGAGTTTCAAGTTTGGTTGAGAATTAAATAAGAATGAAATAAATTTTGTAAGT AATGAACATGCAATGAAGAAGAAGGTTCTGGAGAATCAGAAGAAAATCCATCACCATCCAAGTCAAACATACAAAATCAG CAATATTTGATGTTGTATAAATTCCGGAATTGGTATTTGCTAAATGGAACTCCCCCTGCCAATTTTATAACTTTTGAAAA CTAGGGAAATTCGCAGATTAAATATTTACTTGTAAATTAAAATGGTGTAATTTTGATTTTCTCCCTAATCAAGTAGGGTA TTTTTTTTTTGCATTTTTATGTATGGTTTTTAATTTAGGAACAAGACTTGCTTTAGCTTATAGTGCAGTTATTTGAAGAA GAATAAATCTGTACGAGAGATGATGAAGTTAGGATGGTGATACTGCAAAAAACTGTCCTCATATAACTCTGAAATCACCA CCATCTCGTATAGAAGTTCTAATCTCAAATCACATTATGTACGACAGGGTGCTTACAGTTCATGGTTCTTCAGACACAGT TATCCCTGTTGAAGATGCACTTGAGTTTGCCAAGATTGTACCTAACCACAAATTACATGTCATAGAAGGAGCTGATCATT CATACACTAATCACCAAGATGAGCTAGCCTCGGTTGTTGTGAACTTCATAAAAGAAAACTTGCACCAGGAGTCCTAGATG TCTGTCTTTCTTTGCTTGCAGGATATGAACTTATTTTTTTTGTTTGAGATTTGATTTTTCTAATCATGTAATTGATAGAG GTGCAGTTTCGAGTCAACAGAATTTGCTACTGATGATATATTCTAATGGAATAACCTGCCTATGATGTTCAACATGTTTG AGCTCGTATATGTTTTGCTCATTAAATTAGTGAGTTGCTTAA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0310300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCTAGCTGCACAAATCCCAGGTGTTGAGCAACAGAGACTCATAATACCCAACAAGCACGGTGAAAAGCTAGTCGG TATATTGCATGATTCTGGATCCAAGGAAATTGTAATCTTGTGCCATGGATTTCGGTCCTCCAAAGAATCTGATTCCTTAG TGAACCTTGCTGGTGCATTGGGAAATGCCAGAATCAGTTCTTTCCGCTTTGACTTTTCTGGAAATGGGGAAAGTGATGGT ACATTTCAATATGGCTACTATTGGAGGGAGGCTGAGGATTTACATGCTGTAACTCAACATTTCAATGAAGCAAACCGTGT AGTTAGTGCAGTTGTTGGGCATAGTAAAGGAGGTGGCGTGGTGCTTCTTTATGCTTCAAAATATCATGACATTAAAACAG TTGTCAACATCTCTGGACGTTATGATCTGAAGACAGGAATTGAAGAACGGCTTGGAAAAGATTTTATGGAAAGAATTAGA AAGGATGGTTTCATTGATGTGAAGAGATTAGGAAGTTTTATTTTCCGTGTGACTGAAGATAGTTTGATGGACCGATTAAA TACAAATATGCATGAAGCATGCCTTCAGATTGATAAAGATTGCAGGGTGCTTACAGTTCATGGTTCTTCAGACACAGTTA TCCCTGTTGAAGATGCACTTGAGTTTGCCAAGATTGTACCTAACCACAAATTACATGTCATAGAAGGAGCTGATCATTCA TACACTAATCACCAAGATGAGCTAGCCTCGGTTGTTGTGAACTTCATAAAAGAAAACTTGCACCAGGAGTCCTAG

Download CDS Sequence

Protein sequence (LotjaGi4g1v0310300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALAAQIPGVEQQRLIIPNKHGEKLVGILHDSGSKEIVILCHGFRSSKESDSLVNLAGALGNARISSFRFDFSGNGESDG TFQYGYYWREAEDLHAVTQHFNEANRVVSAVVGHSKGGGVVLLYASKYHDIKTVVNISGRYDLKTGIEERLGKDFMERIR KDGFIDVKRLGSFIFRVTEDSLMDRLNTNMHEACLQIDKDCRVLTVHGSSDTVIPVEDALEFAKIVPNHKLHVIEGADHS YTNHQDELASVVVNFIKENLHQES

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR42886:SF47 View details on PTHR42886:SF47 Search for proteins/transripts with this domain View external data on PTHR42886:SF47	3	263	261	9.1E-137	–
PANTHER	PTHR42886 View details on PTHR42886 Search for proteins/transripts with this domain View external data on PTHR42886	3	263	261	9.1E-137	–
SUPERFAMILY	SSF53474 View details on SSF53474 Search for proteins/transripts with this domain View external data on SSF53474	4	261	258	1.24E-42	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1820 View details on G3DSA:3.40.50.1820 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1820	10	264	255	2.5E-50	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF12146 View details on PF12146 Search for proteins/transripts with this domain View external data on PF12146	34	149	116	1.1E-11	IPR022742 Show description in modal box View details on IPR022742 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0310300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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