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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0310800 |
| Transcript ID | LotjaGi4g1v0310800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calmodulin-binding family protein; TAIR: AT4G33050.3 calmodulin-binding family protein; Swiss-Prot: sp|O82645|IQM1_ARATH IQ domain-containing protein IQM1; TrEMBL-Plants: tr|I1MSF5|I1MSF5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0310800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68719153..68722676) extracted from Lotus japonicus Gifu genome v1.2.
AATAATTGTGGTGGGCGAGTGAGAATCGAAAAAAAGCAAAAAAAATTCATGATATGTGTGTGTAAAAGAAAGCAGCTGGT GGTTTCTTCATGGAACCTCCCAAAAGCTTACTTTGTTTGACCGCCAGCAGCATTTACCTTTCTGGGGTGGGTGCCCTTAA ATATCCATCTACGTACACTCCCTCAAATCAAAGACACAAGAGCTGAAAAACGAGAATTCAAACCAAACCACCACGCTTTG AATTCTTCAAACAACTAGTGTGTCCTGCGTGCTGCCACCAGATTCTCAGTTTGGAATTCAAAACCTGCTTCTAATTTTTT CCACAATTCAAAGCACCTCAGAGCCTATATATAAGCAAAGGTAGCCACTGTGATAGACCCATCTTCTTCAATCTTCACCA TAACAAAACCAGAGTTAGATAGATATATATCTTCATTCACACATACATCACTCTCTGTCTTGAAGCTGATAGATAAATTG TCGCTTCCAAAGACATGACATTGATTTTAAGACCAGAACATGTGATCACTCAAAGAAGCCTCTCGTTTGTTAAAGAAATG GAAGAGCAGAATCAGAACAACATGGACCCAGATGCTGTTGTTGGGAGCAAAACTGAATTCAAGTGTAAAGCTGTGTCCAT GCTTTCAGTTTCTCTGCCTGAACCAGTGGTTTTCTCTTCCCCTAGACCCGTTTCTGAGCTTGATGCTGCTGCAACTAAGC TTCAAAAAGTGTACAAGAGTTACCGCACAAGAAGAAACCTTGCTGATTGTGCCGTGGTGGTGGAGGAGTTGTGGTGGAAA GCGTTGGACTTTGCTGCTCTTAAACGAAGCTCTGTTTCGTTCTTCAATGTTCAGAAGCCAGCTTCAGCAGTGTCAAGGTG GACAAGGGCCAAGACAAGAGTAGCTAAGGTACTATCCAATGTTGTGACTTGTGATAATTTAGTACATGTTTGGAAATCCT TGATTCTAAAGTCAAAATCAAATTTGGAAAGAAGCTTATGAGTGTTAGAATTGATTCTGAGAAAAAATGAACTGATCCCA ACATGCTATATTAAGATTTTCCCAAATTTGAGGCACCTTTTGTGATTGTCTTATGTTATTTTGTTCCCTAGTTGGTACTA ATCTCAAAAGTTTCTTCTACAGGTTGGTAAAGGTTTATCTAAGGATGAAAAGGCACAAAAACTAGCACTGCAACATTGGC TTGAAGCTGTAAGTGCTTGAATCTGAACCCTTCTGAATCATTTTTCTATTAAGCTTTTCCCAGAAGGTGCTTGAAGAACA GTTTTTTTTGTTTCGGATCTAGTGGTATTAATAGAGCCAATTCTTTGTTTGTTTGTTTGTTGTACAGATTGACCCACGTC ATCGCTATGGACACAACCTGCACTTGTATTATGATATTTGGTTTGATAGCCAAAGCACTCAACCATTTTTCTACTGGTAA ACTCTTGTTCTGAGATATCTATTTCTTCTTTAGTGTAATTATGATGAAGGTTCTAAGATGGTAAAACAGAAGATAAGGTT CTGGATGATGATTAGTTATGTTTTTCATAATATGTAGGTTGGATATTGGAGATGGCAAAGAAGTAAATCTTGAGAAATGC CCAAGGAACACTCTGCATCGCCAGTGCATTAAGTATCTTGGACCAGTAAGTTATCATCTCTAAACAATTAATCCTAAGTT GGATTTTAGAAGATCTCATAAGCCTATATATCTTATATCTAATGTTATTTATCTTTGTGTGTTGTTTCGATTGCAGAATG AAAGAGAAGAATATGAAGTTATTGTTGAAAAGGGAAAGCTGGTGTTCAGACAGGATGGGAGGCTTGTGGATACTGATGAG AAATCGAAATGGATATTTGTTCTGAGCACCACAAGGGCCTTGTATGTGGGGAGAAAACAAAAGGGTACTTTTCAGCACTC TAGCTTTCTTGCTGGGGGTGCAACCACAGCAGCTGGAAGAATGGTGACCCATGAGGGTGTTCTTGAGGTACAGATTTAAC TCTATTTCACAATCCATACATCATCATTAGGTTCATTACTATAAGCATGTTTAGATTAGCTTCTCTTTTGTGAGAATCCG TTCTAGGACCTAGACGCTACTCACATAAGTTTCACCTCAGAATCGGTTTTGACTTTAAATTCGAATTGAAAAAGAATTTC TAAACATGCAGTATACTTATATTTGGTTCTCAGAAGCAATTTTGCTAACTTATGATACAAAAATGCAGGCTATTTGGCCA TATAGTGGTCACTACCACCCAACAGAGGAGAACTTCAAGGAGTTTATAAGCTTTCTTGAGGAGCACAATGTAGATCTCAC CAATGTAAAGGTAACACTTTGCTCCCTAGAAAATAGTATGTTTAACGTCTTCTATTTCATCAGAATCAATTCTGACATCT CGAAGCTACTCACAAAAGCTTGTTTCCATAATTGATGTTAGCTTAAGAATAAATTATTCAATCATGCACTTGCTTGATTT GATTTCTTAGAAAAAATTATTAATGTTTGTTTGTCTTGTTTCTTGCAGAGATGTGCCATAGATGATGATACTCCTTCATT TATTGCCACTAATGAATCACAACAAACTATGGGTCCTTCATCAGCAATTAATGTGAATGATAGCAACATGGTGACAATTC ATGAAAATGATGATGGTGGTGTATTTAACCTATCCAAGAGGTTGTCTTGCAAGTGGTCCACTGGGGCTGGACCTAGGATT GGGTGTGTAAGGGACTATCCTGAACACTTGCAATCAAGAGCAATGGAACAAGTCAATTTGTCCCCAAGACCCACTTCCGC ATTACTCAATAAACGTTGCCCAATTCCTTCACCCAGGCCCAGCCCAAAAGTCAGGATGTCTCCCAGGCTTGCCTACATGG GATTGCCCAGCCCAAGAAACCCAATTCCAGCAACAAACTAAATGAAACTTCATTGACAAAAAAAATAAAGAAGCTTCATA GTTGACCATAAAAATGGAAGCTATGGTCATGGCAGGGTAGAGGGCACTTCTTGTGGCGGCAACAAGTAAATGATGAGAAC AAAGGACTAGTGACTAACAGAGAACACTTCATTTTTTAATTACTTTTTATAAATCCACAAACCGTTTATTTCTTCATTCT TTTAGGAACTTTGTATTTCTCATGCTTAAGAGTGACACCAATTTTCGCCTCTTTTGTTTTTGGGAAGGCAGCTGAAAGAT TCACTTAATCTTTATGTAGTACAGTGCAGATATTAAAGCATGACCTCATTTCTTTGTTTTCAATTATTTTCCTTTTTCAT TATGATATAGTTCTTGTTGATAATATATAAGAAGTTATTTTCCGATGTGCCAAAAAAAAAAGATAATATATAAGAAGCAA TTTACTAATTTTCTAGTACTTATGATAGATATTAATATTATAGTATCCATTATTATACCAGCATTTTAAAAGAAACAAAT CATGTACCTAAATTTGTGAGTACAGAGTAGCAACTTTAATCTCTATTTCCTTAGCCAATGCGTATCCATGTACTTATATT CACA
CDS sequence (LotjaGi4g1v0310800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACATTGATTTTAAGACCAGAACATGTGATCACTCAAAGAAGCCTCTCGTTTGTTAAAGAAATGGAAGAGCAGAATCA GAACAACATGGACCCAGATGCTGTTGTTGGGAGCAAAACTGAATTCAAGTGTAAAGCTGTGTCCATGCTTTCAGTTTCTC TGCCTGAACCAGTGGTTTTCTCTTCCCCTAGACCCGTTTCTGAGCTTGATGCTGCTGCAACTAAGCTTCAAAAAGTGTAC AAGAGTTACCGCACAAGAAGAAACCTTGCTGATTGTGCCGTGGTGGTGGAGGAGTTGTGGTGGAAAGCGTTGGACTTTGC TGCTCTTAAACGAAGCTCTGTTTCGTTCTTCAATGTTCAGAAGCCAGCTTCAGCAGTGTCAAGGTGGACAAGGGCCAAGA CAAGAGTAGCTAAGGTTGGTAAAGGTTTATCTAAGGATGAAAAGGCACAAAAACTAGCACTGCAACATTGGCTTGAAGCT ATTGACCCACGTCATCGCTATGGACACAACCTGCACTTGTATTATGATATTTGGTTTGATAGCCAAAGCACTCAACCATT TTTCTACTGGTTGGATATTGGAGATGGCAAAGAAGTAAATCTTGAGAAATGCCCAAGGAACACTCTGCATCGCCAGTGCA TTAAGTATCTTGGACCAAATGAAAGAGAAGAATATGAAGTTATTGTTGAAAAGGGAAAGCTGGTGTTCAGACAGGATGGG AGGCTTGTGGATACTGATGAGAAATCGAAATGGATATTTGTTCTGAGCACCACAAGGGCCTTGTATGTGGGGAGAAAACA AAAGGGTACTTTTCAGCACTCTAGCTTTCTTGCTGGGGGTGCAACCACAGCAGCTGGAAGAATGGTGACCCATGAGGGTG TTCTTGAGGCTATTTGGCCATATAGTGGTCACTACCACCCAACAGAGGAGAACTTCAAGGAGTTTATAAGCTTTCTTGAG GAGCACAATGTAGATCTCACCAATGTAAAGAGATGTGCCATAGATGATGATACTCCTTCATTTATTGCCACTAATGAATC ACAACAAACTATGGGTCCTTCATCAGCAATTAATGTGAATGATAGCAACATGGTGACAATTCATGAAAATGATGATGGTG GTGTATTTAACCTATCCAAGAGGTTGTCTTGCAAGTGGTCCACTGGGGCTGGACCTAGGATTGGGTGTGTAAGGGACTAT CCTGAACACTTGCAATCAAGAGCAATGGAACAAGTCAATTTGTCCCCAAGACCCACTTCCGCATTACTCAATAAACGTTG CCCAATTCCTTCACCCAGGCCCAGCCCAAAAGTCAGGATGTCTCCCAGGCTTGCCTACATGGGATTGCCCAGCCCAAGAA ACCCAATTCCAGCAACAAACTAA
Protein sequence (LotjaGi4g1v0310800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLILRPEHVITQRSLSFVKEMEEQNQNNMDPDAVVGSKTEFKCKAVSMLSVSLPEPVVFSSPRPVSELDAAATKLQKVY KSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNVQKPASAVSRWTRAKTRVAKVGKGLSKDEKAQKLALQHWLEA IDPRHRYGHNLHLYYDIWFDSQSTQPFFYWLDIGDGKEVNLEKCPRNTLHRQCIKYLGPNEREEYEVIVEKGKLVFRQDG RLVDTDEKSKWIFVLSTTRALYVGRKQKGTFQHSSFLAGGATTAAGRMVTHEGVLEAIWPYSGHYHPTEENFKEFISFLE EHNVDLTNVKRCAIDDDTPSFIATNESQQTMGPSSAINVNDSNMVTIHENDDGGVFNLSKRLSCKWSTGAGPRIGCVRDY PEHLQSRAMEQVNLSPRPTSALLNKRCPIPSPRPSPKVRMSPRLAYMGLPSPRNPIPATN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 455 | 444 | 2.0E-237 | – | |
| PANTHER | 12 | 455 | 444 | 2.0E-237 | – | |
| MobiDBLite | 420 | 440 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0310800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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