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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0312600 |
| Transcript ID | LotjaGi4g1v0312600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pre-rRNA-processing protein esf2; TAIR: AT3G56510.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|A3LVD5|ESF2_PICST Pre-rRNA-processing protein ESF2; TrEMBL-Plants: tr|V7C3W0|V7C3W0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0312600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68943459..68947068) extracted from Lotus japonicus Gifu genome v1.2.
ATAGCACTAGGTTCCCTACGCTTACTACTTCATTGTTCCTCTTCGCTACAGTAGCAGCCCCTTCCTCGGTTGCGCCTCCG CTAGCCACCGCACCAAACCGGCACTCCCGTCCCCTAAAATCTCAACCCAGCATTGAGCTTCTGTTCAATCAACCACACAA ACACCAACCAAGAACACAAAGAGAAGAAGAAGAACAATGCAAGACGGTGAGATTGATCAAACAACAACCACATCGAATGG AGAGAACAACTCGGAGTCGAAATCGAAGAAGAAGTTGAAGATGAAGAAGAAGCTGGAGAAGGAAACAGAGAAGGCTGATA AGCGTGGCTTGTGCTACATGAGTCGCATCCCTCCTCACATGGACCATATCAAGCTTCGCCACATTCTCTCTCAATTTGGT GATATTCAAAGAATTTTTCTCGCTCCTCAAGGTACCCCATCTTTTGTTCATACTCTGACACAACACAAAAATCATCAGAT TCTGATTCATGTGCTTCTGTCACGTTAATTTTGCAGATTCTGCTTCTAAGAGGTCACACGGATCCAGAGACCAAATGTTT TCAGAAGGGTATTTGTTGTTTCTTGTTGTTATTCGAATTGGATTGATATCTGATTGAACTTGTTGGTTAAACTAGTTGCT GAATTTTTTCTATGTTGGTTGGTTTTGATTTTGATCATTGTGTTTTTCTGTGTGACTGTGTAGATGGGTCGAATTCACTG ATAAAAGAGTTGCTAAGAGGGTTGCCAATATGTTAAATGGTGAACAGATAGGTATATGTTTGCTCTTTGGTCTTGGTTTT TGAATGGAAATCAATCATCTTGTCTCCTATTTGATTATCAATATATTAGCTGCATTGGTTGTTATATAATCTTGTTTGAA AGTATAGTATGGTGTTTACTTGTGGTAGCAGGGTTATGCTCTAGTTGGGGCTGTACTTGTTTTTCCTTCTTGTCTTATAA TGGAAATCACAATGTTGTTCTATTGTCAATTCTAGAATTGTTTTATTCCTTTAATTTTGTGAAAGAGTGCTAGGTAACCG AATCCCCTAGGTTACCTTAGTTAGAAGCAGGGTAGTACTAGTAGTAGAATTCTGATATTATTCACAATAGAAATGTACAA GATTGCTGAGATATTCGAGATTCTCAGCCACTCTCCCTAAGTCTCAACCCAAATGATCCCTAAAGATGATTAATGCTCTC TAACTCACTCTTATTATAGACTAACCCACAACCCTCTAACTAACTACCCTTCTTAGAACTAACCTAGGGGATACGGTTAC CTATCAAAGAGAAATGCAATATATTCATGGTAGTGTTTACTTGTAGCTGTATTGTTCATTGTGTTTGTTTGTGGGGATTC AGTTTTCAAGTTTCTGATTTGTATTGTGTGTGACCAGGAGGAAAGAAGAGGTCATCTTTCTACTATGACCTTTGGAATAT TAAGTACTTAAGTAAGTACAAGTGGGATGATCTGTCCGACGAAACAGGTAATCACTTTATGATCGGTGTCTTGTTTTTTA TTTGGTGGAGCCTGAGCAGCTTATGCTTACGCAAATATATGTTTGTTACAGCCTTCAAGAAAGCTCAGCGCAAGGAAAAA CTGGCATTAGAACTTTCTGCTGCCAAGAGAGAAAGGGATTCCTATCTATCCAATGTTGAACGCTCACGTGCTTTGAGTGC TATAGAGGAGCGACTGAAGAAGGTACACTATGTCTACCCTTCTCTGCTTATCAAAAAAAATGTCTACCCTTCTCAAAAAG TAAAATAAGTTATTGTGCCATTATGGAATTCAATCTAGATATTTTTGGGGTATGTATTTCACACATTGAGAGAGAATTTA GAAAGAAGAATCTGATAAGTTCTGTATTTCATGTAAGTTTTCCTTTCAGGTGACCATAGAGATCTTATATTTATAGAAGA TAATAGCTTCTAGCAGAAGCTTGTGAGCTGTTTAACTTGTAACTGCTCAACAGAATCTTAACAGAAAACTATCTTAGTCG ATAGTTCTTTCCAATTCATTTTTATTTTGGCAACCATTTGAGTGGCAGGCTATATTTTGTTTGAGGCTTTGAATCCAACC CTTTCTGGGGACCCTTAGGTAACAGTAAGAATTGTGGATAGTTAAATAAATCCAATTTTGTGAACTGAATGAATTAAACC AACTAATTTTAGATGGTATTGTGATTTGCTGGACAGAGAAGTCTTTGGGTTCTGAGGAGTTGGTTATGGTTTATAATAAT TAATGATTGAGTTTTATTCACTTGACAGACTAAAACTTGATGTTCTTACTGCTGATGATGTTTGATGTTATACTTGCTAG ATCTCTACCACTGCATAATCCCTAAAAAACTTTGTACTAAATTTCTGATCCACTTTACTTTTGTGTTCCACTACATTTGC TTACTCGTTTTGACTTGTATTGTTCCGTCCTACTTGAAATATTTTAGCTGTGTTGGGCTAGGATAGACTGCCAAGTTCTG GAAGAACTTGGTATGGATTGTAAATATTGTTACTTTTTCCTTCAAGTCATGAAGAATTCGTGACTGTTATGTAGTTTTCT TTTGCTTAAAAAACAATTCAATGAGAATTTACTTAGTGCCTGTTTGTGTACGCGTTGAGATGTGGAATACGTGCGCCTGA ATGGAAGCTCCAAATTGTAGTGTTGAGAAATACGCGCGTTCAACGTGAGAAGAACGCCAACGCAAATGGGCTCTTAATCA TTAGGCTGTTACTTTCCATCTGTATTTTTTAAAATTTAACTGAATATTATGTGTATGGAGGACTTAGCTCATACTAATAT CATTGTATTCGGCTTGCACAGAAACAAAAGGTTCAACCAGACTCAGTACAAGTGACGAAAGTGATTCGCCATTTCTCTCA GACAAAGCCAATAGCAGCTGCTGCTAAAACTAAATCTGAACTCTCCGACGATGTACTGGATGCAGTAAGTATCAATTTCA TTTGTATTTTCTCTCCTTTTTTTTTCTTTGATGAAATACTTAATGTAGGAAATCAATCATGTTTAATTGAAGGTTTTCCA CTATGTCCCTTGCAGGTATTTGGCGGCTCATAGTGCATGTATTGGTTATACCTTCAACATGGGGTCATACTTTCTTGATG TATCTATTAATTTGTAATGATTTTTCTAGAAATTAGTTTCCTTGTTGATCCTTTATTTTCAAAATTAAAAGGGATCTGCA TACGAAACAACTAAGAGGCAATGGGGTTAGCGGAGTTGAAGTTTCTGAATTGTGCAAGATTTGGTTTTGAGTGAAACTTT TTGCCAGTTGCAAACAAAACCGTCCAATTATGAATTGTAATCTCCAAAATCATGTTATTATTGTCTAGAACGCGAGTACC TGCATAATTCTGCAGTAGAAAAAAGGCAAAAAAAAAACATTAGATTTTTTATAGAGTCTAAATTTGAAAATTAAAAACCC TGAGTTCTAAAAGTGACAACATGCAGCTTCTTTGCTAATGGCTTTAAGAGTCTGTATAACACATCAAAACATGCACTCAA TAAAAGCTGTTTTTATCACTCTAGGCACTTAATCAAAACCTGTAGCATGCCTGTTTATATGTGATTAAATAGTAATTTCA AGGCACTTCT
CDS sequence (LotjaGi4g1v0312600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGACGGTGAGATTGATCAAACAACAACCACATCGAATGGAGAGAACAACTCGGAGTCGAAATCGAAGAAGAAGTT GAAGATGAAGAAGAAGCTGGAGAAGGAAACAGAGAAGGCTGATAAGCGTGGCTTGTGCTACATGAGTCGCATCCCTCCTC ACATGGACCATATCAAGCTTCGCCACATTCTCTCTCAATTTGGTGATATTCAAAGAATTTTTCTCGCTCCTCAAGATTCT GCTTCTAAGAGGTCACACGGATCCAGAGACCAAATGTTTTCAGAAGGATGGGTCGAATTCACTGATAAAAGAGTTGCTAA GAGGGTTGCCAATATGTTAAATGGTGAACAGATAGGAGGAAAGAAGAGGTCATCTTTCTACTATGACCTTTGGAATATTA AGTACTTAAGTAAGTACAAGTGGGATGATCTGTCCGACGAAACAGCCTTCAAGAAAGCTCAGCGCAAGGAAAAACTGGCA TTAGAACTTTCTGCTGCCAAGAGAGAAAGGGATTCCTATCTATCCAATGTTGAACGCTCACGTGCTTTGAGTGCTATAGA GGAGCGACTGAAGAAGAAACAAAAGGTTCAACCAGACTCAGTACAAGTGACGAAAGTGATTCGCCATTTCTCTCAGACAA AGCCAATAGCAGCTGCTGCTAAAACTAAATCTGAACTCTCCGACGATGTACTGGATGCAGTATTTGGCGGCTCATAG
Protein sequence (LotjaGi4g1v0312600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQDGEIDQTTTTSNGENNSESKSKKKLKMKKKLEKETEKADKRGLCYMSRIPPHMDHIKLRHILSQFGDIQRIFLAPQDS ASKRSHGSRDQMFSEGWVEFTDKRVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKYKWDDLSDETAFKKAQRKEKLA LELSAAKRERDSYLSNVERSRALSAIEERLKKKQKVQPDSVQVTKVIRHFSQTKPIAAAAKTKSELSDDVLDAVFGGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 18 | 18 | - | – | |
| MobiDBLite | 1 | 39 | 39 | - | – | |
| Gene3D | 2 | 123 | 122 | 1.9E-12 | ||
| PANTHER | 12 | 234 | 223 | 1.4E-90 | ||
| PANTHER | 12 | 234 | 223 | 1.4E-90 | – | |
| SUPERFAMILY | 40 | 122 | 83 | 1.63E-9 | ||
| ProSiteProfiles | 44 | 122 | 79 | 8.774 | ||
| CDD | 44 | 137 | 94 | 5.06834E-50 | ||
| Pfam | 47 | 122 | 76 | 2.0E-6 | ||
| Coils | 156 | 176 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0312600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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