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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0316800 |
| Transcript ID | LotjaGi4g1v0316800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT5G49610.1 F-box family protein; Swiss-Prot: sp|Q9FGY4|FB341_ARATH F-box protein At5g49610; TrEMBL-Plants: tr|G7JR26|G7JR26_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0316800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69417526..69420117) extracted from Lotus japonicus Gifu genome v1.2.
TTCAAACGCTTTATATGTTGTATGGTTCAAACGTGGATTAGTTCATACTTCATAGTTACTGGGCTTTCAAAGGTCATAGA CCAGTAAACATTGGACTTGTTCCAAATGGACCAGTTCTCAGAGATATCTTTGAGATTCAATAGTATAAAACATCAAACTC TTCAAAAACTATTAGCATAAGGTAAATATTCAGATCACAAGAATTGACTATCATGGAAAATCTGTCGGATGATTTACTGA TGGAGATATGGAGTCGTGTGCCATACAAGATGACAGTGAGATGCAAATCCGTCTCGAAGCGCTTCTCAGCTTTCATCTCC CGCCCTGAGTTCATGTCGCGGTCCATCTCTCACTACCACACCCTGCTCCAACACATGAACCAGGAGCAGCATCACAAAGA ATGGTGCTTGAACTTTGTGTCCAAGCGTAACCTTCTCATCGTGTTCCTCCCCAAACTTCACCTACTCAATCCTCAAAGCC AAAACCAACTTTCCTTGAGTTTTCTCGGCAGAAAATTCGACCCAAAACTTGATGATGAAAGGAAAAAAAGTGCCCTGTAT TCAAGGATTGTAGGCTATTCCAATGGTTTGCTCCTATGCAAGAAAACATCGCGTGGGAGAGTCTACCATGTCACCAACCC TATGACAAGGGAATGGACCAAACTCCCTCTTCCTCCTCCACCGCTCACCGGTCACAACCAACGTGACTGTGTCTTTGAAG GGTTTGTGTGTGAACCTTTTTACCAGGTCGAAGCAAACAATGTCGTCACTCTCAACAGCCACAACAGGTTCAGAGTAGTT CGTTTTCCGTGGTTGAATGATAGGGTGTTTTCTCATACACCAAAGTTCGAGTTTGAAATGGTGGTTTTCTCATCTGAAAC AGGGCAATGGTGTAGAAAAACTGTATCTTGCCCAAAGGGTTTTGTACAAACTGACATTTTGATCCATGCAGTTGCACATA GAGGGAGATTGTATTTCATGGGGAGGATGGATCTTCTGGTGTACGACCCTTTCAACAATGATGCCCATCAGTGCTGTCAC ACCATTGATTATCCTATTCATTCTCCATATCCAAGAGATCTTCCTTTTACGGGCCATGTTGGGGTGTCCTGTGGAAACAT TCGAATTGCTAATATCTCTTGCTCATTTGACCCCCATGTGTTAAATACTATGACTGTGTGGGAACTGGAATATCAAGATG ACTCTAGCTGCTGCTGCTGGCATTTGGTGCACAAGACTTTCATTCCTGGCCAAGATAGGAGAAGTTGTATCAGACCTGAG TTTGAAACAAGGCGAGAATGTGAGACGGTTGATCTGGGGATGCAGGTGAGAGCTTTCCATCCACATCATGGAGATGTTGT GTTCTTCCAACGTTCTCACAGCATATTTTGTGGAAACTTGAGGACTAACCAGTTTGACACTGTCGGATATGGGATTCATG GGTTCCAGGTGTTGCAGATCATTTCAATTGATCTTCCAGGTTGGCCAGCTCCTGTTCCATCTATAACATAAAGTTACTTC CCTTCTCTGATAGATTAGAGTAGAGATCTTGGTTACTTGTTATGTATGTGTTTGAATACCAGTTAAGGAACGACAAGTGA TACGGTATTTATCCTGTAAAGTCAGCTTACAAGGTACTTACTACAAGGCCATGATCAGGAGGAATCTGATTTTGTCTTCA AAGATGTATGGTCAGTGATCACTCCTTCTATGCTTGCACCTTTTTGTATGGAGGGTATTTGCTGGATAGGATCCAGAGTA GAATGAATTTAAGAAAGAGATAGGATCCAGGTATTTTCTTGCCCCTTTGCTTGGGCTGTGTGGACATCATGCTACAATTG GCTGGGCATTACAACTGTTCTACCAAAGGATGGGAGGATGCATTTTTCTCAGCATGTTTTTAGAAATGATTTGTTATTTT CAGGTGAGTCCTTGGTCGTGACAAAAGTGGTGGAATTGACCCAACTAGTTGTTGGAATTGGCTTAAAGCCAAATTGTGAG TGGATGCAAAACCCATCATACTGGCTCTCGAATTTGTAATATGAAACTTGTATTCTGTTGTAACTGGGAGGGGTCTAGTG GCTTTCTGAGCTCCACCTTTAATGCTACATGAATCTTGAGGGCTGGAAATGAATACCCCTTCCTGAATGCACATCAATGC TTTCTCGCTTTGTTCCTATCCTAGTGCACTATCTACATTTGGTCTCTTTTACATTTGATCCAAGGTCTTTGGGGCACCCC TTGGAAGAATTGTGGAAAAAGGGTTTTAGGACCTGCAAGTGGTAATTAATTGCTGCCTCTATATACTGGACAGAAGGGGA TCAAAGATTACTAGGTGGGTGGGCCTTTAAGATTAATTTGTTTTTGGTGGGTGATAGCTGATTGAGGCATAACTGTGGAT CTGTCACAATCCTCATTTGCCTGAACTGATCATTTCTCTTATTTGTAACGTTCTCTTATTATTGGGTTTTTATCACCCTT GTGCTTATGAATCAAATCTCTTTTGCTGATAAGAAAAAGTACACCATGAACAGACAGACTCTCATCTCAATCCATAAACA GAGATTCATTCAGTTTTTATCTCGAAGTGAGT
CDS sequence (LotjaGi4g1v0316800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAATCTGTCGGATGATTTACTGATGGAGATATGGAGTCGTGTGCCATACAAGATGACAGTGAGATGCAAATCCGT CTCGAAGCGCTTCTCAGCTTTCATCTCCCGCCCTGAGTTCATGTCGCGGTCCATCTCTCACTACCACACCCTGCTCCAAC ACATGAACCAGGAGCAGCATCACAAAGAATGGTGCTTGAACTTTGTGTCCAAGCGTAACCTTCTCATCGTGTTCCTCCCC AAACTTCACCTACTCAATCCTCAAAGCCAAAACCAACTTTCCTTGAGTTTTCTCGGCAGAAAATTCGACCCAAAACTTGA TGATGAAAGGAAAAAAAGTGCCCTGTATTCAAGGATTGTAGGCTATTCCAATGGTTTGCTCCTATGCAAGAAAACATCGC GTGGGAGAGTCTACCATGTCACCAACCCTATGACAAGGGAATGGACCAAACTCCCTCTTCCTCCTCCACCGCTCACCGGT CACAACCAACGTGACTGTGTCTTTGAAGGGTTTGTGTGTGAACCTTTTTACCAGGTCGAAGCAAACAATGTCGTCACTCT CAACAGCCACAACAGGTTCAGAGTAGTTCGTTTTCCGTGGTTGAATGATAGGGTGTTTTCTCATACACCAAAGTTCGAGT TTGAAATGGTGGTTTTCTCATCTGAAACAGGGCAATGGTGTAGAAAAACTGTATCTTGCCCAAAGGGTTTTGTACAAACT GACATTTTGATCCATGCAGTTGCACATAGAGGGAGATTGTATTTCATGGGGAGGATGGATCTTCTGGTGTACGACCCTTT CAACAATGATGCCCATCAGTGCTGTCACACCATTGATTATCCTATTCATTCTCCATATCCAAGAGATCTTCCTTTTACGG GCCATGTTGGGGTGTCCTGTGGAAACATTCGAATTGCTAATATCTCTTGCTCATTTGACCCCCATGTGTTAAATACTATG ACTGTGTGGGAACTGGAATATCAAGATGACTCTAGCTGCTGCTGCTGGCATTTGGTGCACAAGACTTTCATTCCTGGCCA AGATAGGAGAAGTTGTATCAGACCTGAGTTTGAAACAAGGCGAGAATGTGAGACGGTTGATCTGGGGATGCAGGTGAGAG CTTTCCATCCACATCATGGAGATGTTGTGTTCTTCCAACGTTCTCACAGCATATTTTGTGGAAACTTGAGGACTAACCAG TTTGACACTGTCGGATATGGGATTCATGGGTTCCAGGTGTTGCAGATCATTTCAATTGATCTTCCAGGTTGGCCAGCTCC TGTTCCATCTATAACATAA
Protein sequence (LotjaGi4g1v0316800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENLSDDLLMEIWSRVPYKMTVRCKSVSKRFSAFISRPEFMSRSISHYHTLLQHMNQEQHHKEWCLNFVSKRNLLIVFLP KLHLLNPQSQNQLSLSFLGRKFDPKLDDERKKSALYSRIVGYSNGLLLCKKTSRGRVYHVTNPMTREWTKLPLPPPPLTG HNQRDCVFEGFVCEPFYQVEANNVVTLNSHNRFRVVRFPWLNDRVFSHTPKFEFEMVVFSSETGQWCRKTVSCPKGFVQT DILIHAVAHRGRLYFMGRMDLLVYDPFNNDAHQCCHTIDYPIHSPYPRDLPFTGHVGVSCGNIRIANISCSFDPHVLNTM TVWELEYQDDSSCCCWHLVHKTFIPGQDRRSCIRPEFETRRECETVDLGMQVRAFHPHHGDVVFFQRSHSIFCGNLRTNQ FDTVGYGIHGFQVLQIISIDLPGWPAPVPSIT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 82 | 82 | 3.27E-10 | ||
| PANTHER | 2 | 425 | 424 | 2.9E-63 | – | |
| PANTHER | 2 | 425 | 424 | 2.9E-63 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0316800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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