Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0322500 |
| Transcript ID | LotjaGi4g1v0322500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT1G17370.1 oligouridylate binding protein 1B; Swiss-Prot: sp|Q9M427|UBP1_NICPL Oligouridylate-binding protein 1; TrEMBL-Plants: tr|I1MS87|I1MS87_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0322500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70078317..70084243) extracted from Lotus japonicus Gifu genome v1.2.
GTCTACAGTTTTCAATCCACTATCTATCATCTTCATCTTTCGTTTATCTGTCTTCTTCATTTCTTCACCCCTCTCTTTCG AGGGTTTTTTTTTTTTCTCCCCTTTTATTTTCCTTTTTGTATTTTTTCCTTCTGTTTTCTCTTGTTTTTCAATTTTTTTT CTTTTCTAGTTTCATTTCCGTTCCCCTTTCTTCTTCTTCTTCTTCTTCTTCCTCTGCACTGCAACCCTAATCCTCGAATT GAAGATGCAGCCAGAGAGATTAAGGCAACAAGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTCACACCCC CTCAGGTTCCTCTTCTCCCTTTCCTTCCTTTCATTTTCTCAATTTATCGTTTCCTTTTCCCTTCAATTATACTTATTCAT CACGTTTTCTGCTTCAATTTCACTCAATCTCTGTTTGTTATCTTCGTGATTGCTGTTTGCACTTCACTCTGCTGCTAATT CATCAACCTCAACCTTATTTGAATTACCCTACAATTTTGATTTCTTACAATTCATATTACAATTTAGGTTTTTTTCATAT TAGTGGAAACCTTAGGTTTTTCTATGATTTGGTATGTGTGTTTTGTCTGATTAGATTAGCTGAGAGGAGAGTGGATAATC ACAATTTTGCTTTTAGGATTGCTTTTTTCCTTTTTCTTTTCTTTGTTTTTTTACATTTTTATTTTGCAGATAGAACCTAT CATGAGTGGGAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTGTGAGTGTTAATAGACATTTTCTTTTTAT TTTTTTTTATAAATTTCTTCGGTTCCGTTGTTTTTTTCTTTTGTTTTTGCCATTTTTCCCAGTTTAGCTGCCTTAAAGGA TTTGTTGACTTAATTCTTTCATCTTAGATAATCTTTGTAATGAGTTATTTTTCTCAAAATTTTGTTATTGGTTTCTATCG TTTTATAGTAGGTGAATTCAATTCCTTTAGTCTACTGGCTTATGAAGTCTTTCTTTGCTTTATGTTTTGCATTTTGTATA TCTAATCACTCTTGAGGAAATGCAGCTATGTGGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTATTC GCAGGTGCAGGCGCTCTTGAAGGATGCAAGCTTATTCGGAAAGAGAAGGTCAGTTTTTTTTATAATGATCTCTTCAAACA GAAAATAAAAGGAATGATTAATAATTTTATAGAGTACTTGATTCCTGTTTGCTGTACTAGTTTTTTATTGGCTAAAAAGT ATACGGGTAGGCAATAGACATATTGTTTTTTCTTTTGTCATCTCAATCATGATGATATGCTTTATACTGTCATCTGCAGT CATCGTATGGCTTTGTGGACTACTATGATCGAAGTTCAGCTGCATTTGCTATTGTAACCCTCAATGGGAGGAATCTGTAT GTGGAATCTTCCTTTGAAGATTTTGAGTTTTGGTACAACTTTTATTGGTTTAATGTTTTAATGCGTTGTCTGCAGTTTTG GTCAGCCTATTAAAGTTAATTGGGCATATGCTAGAAGCCAGAGAGAGGACACCTCAGGTTATTTTTTTGCTGACCATGCA CTTTTGGAGGTCATATTGCCGTGCCTTACTTTGTGGAATGACAAATTTACATTCTTCCTTCATTTATTTTCAGGCCACTT TAATATATTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACATTATACGCTTGCTTCTCTGCATATCCTAGTTGTT CGTAAGTATTTATATGCCTTTTGTATTTTTTTTGTTATCCTGGTTAACTAGGGATTTTTTTTGGAAGTACTTACACCTGA ACATAATCTGATCTGAAATCAATTCATGTTCATATTGCAGAGATGCAAGGGTAATGTGGGATCAGCAGACAGGTCGATCC AGGGGTTTTGGATTTGTCTCTTTTCGGAATCAGCAGGCATGAAATTATTGCTTATCTTCTCCCATTTGTTCTCTTTTCTT ACAGCCTTTATCAATTTCTGTGTGTTTTCCAAGCTAATGGTGTTTTGGTTTTGTATTCAATTTATCAGGATGCCCAAAGT GCTATTAATGATCTCACTGGTAAGATGTTTTAATTATGTAAATGCTAATTTTTCATTTGTAAAATTCTCCCTGTGATTTA TGAAACTAATGTTTAGGAGTATAGTTGAAAGTATGTATATGATTATCAAACCTCCAATACCATTTAATTTATATATTAGT TGTCAACTTTTTAAGATACAGCATTGTTTAAACTAGAAATTCGACAAAAGATAGAGAAGAAAATGCACTATATTTTTTCA GTAACAGGCCTGATTAAGGTGATCCAGGACCTTAGTTTATCAGTGTGTACAATGTAGAGTAGAAAGAAGAAAAGAAAAAT GGCTCCAGGCATTTGAGAGGCCTAGTCTCTCCCAAGGTCCCAAGTCAAAATCCAGCCCACTCCCCCTACCTCACGTCCCA TGCTTATACTCTTTCATAATCCACGTGCCCCCCTATCCTACGTACTGCCAACTAGGAAATTAGTTAGTTCCTCTCTCCTT AATCCTTATTGAGTGCATCACACTTATTGTGCCATCTCACATAAACCTTAGTAGTCTTGTGCTGTGGGCTTGCATCAGCT CTCTCCCCTTCAGAATTCACCTTGTCCCCAATGGAAAATCAGTCTAGGAGAAAGAGCTAATGGCTGTTGCTGTTGTATTG GCTGTTCAAAGTGGAGACACTACCGGGGTTTGATTTTGAGGTCAAGAATAAGCCTGGGATTGAGAACAAAGCAGCAGTTG CCCTTTCTAGAAAATTGCAGTTTTCAGCCCCATCTACTTTACAATTCTATGAATGGGATTACTTGGAAGAGTAAATACAA AAACTGAAGGATGACAGGTTGAGTGAAGTTATGAATCATATTGGGCAGTGGGCCCGCATCAAATATTCTGCAAATCTTCC TATTACTTTATAGAGAAAGCATTACACAAAAAAGTAAATGCATTTATTATCTTGAAAATATAAAAAAATAATTACTTTCG CTATATAGTAATTAGAAGGATTATTAAAAGGATTTAGAAATATGCTTAAAACTATTCCATATCTTGCAGCAACCTTGAAC CGAATTCCCTTCTTTTAGTAGAAGTTATATGTAATATACATATGATCCCTGTTCCATATTTAAACATATCATATGGGGTT CTGATGGTGGGACATAATTGTGCTGCTGTTATTGCTGAAGGATCAATGAACACTTCACCTGGTGTTTTGGTCCTTGAGCA TGTGATATTCATGTCTTCACCATCATAGTGATAATTTTAATGCGATGTTTGGTTACTTAAATTTCTGTTTTCACAATGTT TAGTACATAGCTTATACTGCTTCAGTTGTATCTGAAATTTTTAATGTTTTTCCTGATACACCAGGGAAGTGGCTTGGAAG TAGACAAATTCGTTGTAATTGGGCCTCAAAAGGGGCTAATGCCAATGATGAAAAGCAGAGCTCAGATTCCAAAAATGTTG TGGAGTTAACTAATGGAACATCTGGTGAGATTGAGTTTTTTGTACTCAAAAAGTACTAAAATTCCATTTACCGGGCTCCT CATTTTTTTCTCTTTATTTTGTGGTTTTAAAAGGCCATTGAATTGAATTATAGTTTTCATTGTCTGTTTCTTCAAATTAT CTTCAATTGAACCCAATATCAGCTTGTCAAGCTGCTGATTTAATATTCTGGTTTTCTTTTGTATATGACATCATGCTTGA TAATTTTCAAATATTTATTTTTCTGTTAAGAATAGTTGCCTGATTATTGATTTTTTCTTGGAGAATGATCTGTATTTCAA ATTGTTTTTTTATTATAGGAAGCCAGGAAATAACCAATGATGATGCTCCAGAGAAGAATCCTCAGTACACAACTGTTTAT GTTGGCAATCTTGCTCCAGAGGCAAGGATTAGTATTATTTTCTGACAGATTTTACCTATGTAGTCCTTCATAGTTCAAAT CTACCTTTAACTGAACGTACTTTTTCTGGCTATTTAAATCTGTAATATAAACTGACCTTTAGCCATGTGCGTGTGTATGG AAGTACCTCAGTGCTGGAAACTAGATTTGGAACTACATTAGATATGGATAGCACAGTCCTGAAAATCCAGTTTGTTCTGA AATTGCTTTATGACTATTCTCATAGGCTGCGACCTTGCAGGTTACTTCTGTTGATCTCCATCAACATTTTCATTCCCTTG GTGCTGGAACTATTGAAGACGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGCACCCATGCTGAAGCA GCTCTTGCTATACAAATGGGTAATGCTCGGGTTCTGTTTGGCAAGCCTATCAAGGTACATGGCTAATTCGCAGGACATTT ATTTGCTGATAATTCTTTCATGTTTTAGTATGTCCTATTGTTATTACTGCGTTATCTATGACTTCTGGTTTAGAGTTATT GATGCTTGAAGAAAATGTGTCGTTTTAAGGATTTATTACGGAACTGCATAGTTTTTTTCTTTCTTTCTTAGAATCCCCTT TGTTAAACTATTCTTGCATCTTAACCTCGACCTAAGGCTACATAAATGTTGTACCTAATCTTGTCGTTATTTTGCAGTGT TCATGGGGTAGCAAACCCACTCCTCCAGGAGCAGCCTCTTCTCCTCTTCCCCTTCCGCCACCGTCTTCTGCCCCTGTGCC TGCTGGATTTTCACTTGCTAGTCTTGCAGCTTATGAACGCCAGATGGCATTAAGCAGAATGAATGGTGCACATGCTGCCC TTCTTCAACAGCAGGGTTATCAAAATGCCGCGAAGCAGGCAGCCATGGGAATGGGTGCTCTCGGGGCTGCTGCTTACGAT ACTGGATTCCAGGGTGTTGGGACCACCCAGCATCTTATGTACTATCCTTAAATTATGTTGTTCAGCTACCTAGTATAAAC AAGGGAAGATTGAAGTCTATTGAACCGCCATAATGGTTCAACAGTACTGGTAACCCTTCTCTGCCCTCTTTTTATCCTTT CACAGTATTTTACTTCTGCACTCGTTTGGAATTATGTAACACATTTGTATATACAGTATTACTGCACTTGCTTAGCAGTT GGATACATGGATGATTTGTCTTCGCTTTCTAATGGCGAAGGACGAAGGTTATTTCCTGAATAGAATATTTATTTTACTAA TATGGAAAGTATAAATGAATAGTTATGTAAAATTTATCTTAATCGAAAAAATGGTTTGATAGTGAATTATTAGTTAAAAA TATTAGTATGATGATATAAAAATATTTTTCAGAATAATAAGAATCAGTATATGTAAAAAAGTCGAGTTAATAACGCTAAA TATGTTTGATCTTTCTAAAATTAAATATTCTGATTTTAGATTCAGACCTGAAATTTCTCATTTTTTTACTTTTTATTTTC TTTATTTAAAATGACCAAATTTAGTACTCTGGCGTTTTGTCAACACCGTTAGGACTTAGGATTGTCTATTTTAAATTTTA ATTTTTATCTGTCATTTAGTTAAATAAGTCTGATTTATTAGTCTAACATAGATTCCTTTATGAACAAAAAAACTTGTTCA AACATCTTTAAAGTACAACCTAGCTAACTTGAAAGAACAACAACGACCAAAATATACTAGACTTTATGAGATACATGAAC TAAAGCGATCAATTAACATAAATGGGAGACTATTGGACTAGTTATTTTAAATAGTTTATGTTCTCATTACTGAATTGGAC ATGGTTGATGACTTGGTGTACTTAAGACACAAAAACAATAAACCTTCGTTATTTTTTTTTTTTGGTACAAATGGAAAGAA AGAACACAAATAGACTAGCAAACTACATCCTGACAAAGTAAGGGTACCACCGCTGAAGGTGGGTACCTCCAAGCTTTCCA ATCCTCG
CDS sequence (LotjaGi4g1v0322500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCCAGAGAGATTAAGGCAACAAGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTCACACCCCCTCA GATAGAACCTATCATGAGTGGGAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTCTATGTGGGCAACATTC ATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTATTCGCAGGTGCAGGCGCTCTTGAAGGATGCAAGCTTATTCGGAAA GAGAAGTCATCGTATGGCTTTGTGGACTACTATGATCGAAGTTCAGCTGCATTTGCTATTGTAACCCTCAATGGGAGGAA TCTTTTTGGTCAGCCTATTAAAGTTAATTGGGCATATGCTAGAAGCCAGAGAGAGGACACCTCAGGCCACTTTAATATAT TTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACATTATACGCTTGCTTCTCTGCATATCCTAGTTGTTCAGATGCA AGGGTAATGTGGGATCAGCAGACAGGTCGATCCAGGGGTTTTGGATTTGTCTCTTTTCGGAATCAGCAGGCATGA
Protein sequence (LotjaGi4g1v0322500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQPERLRQQAMMQHSLYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRK EKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDA RVMWDQQTGRSRGFGFVSFRNQQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 184 | 184 | 3.6E-123 | – | |
| PANTHER | 1 | 184 | 184 | 3.6E-123 | – | |
| Gene3D | 1 | 131 | 131 | 2.5E-22 | ||
| SUPERFAMILY | 45 | 183 | 139 | 5.91E-37 | ||
| ProSiteProfiles | 46 | 120 | 75 | 15.067 | ||
| SMART | 47 | 116 | 70 | 1.3E-16 | ||
| Pfam | 48 | 114 | 67 | 4.8E-14 | ||
| CDD | 48 | 118 | 71 | 5.95091E-37 | – | |
| ProSiteProfiles | 131 | 184 | 54 | 12.884 | ||
| SMART | 132 | 184 | 53 | 0.071 | ||
| Gene3D | 132 | 179 | 48 | 1.4E-15 | ||
| Pfam | 133 | 182 | 50 | 1.9E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0322500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…