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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0322500 |
| Transcript ID | LotjaGi4g1v0322500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT1G17370.1 oligouridylate binding protein 1B; Swiss-Prot: sp|Q9M427|UBP1_NICPL Oligouridylate-binding protein 1; TrEMBL-Plants: tr|I1MS87|I1MS87_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0322500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70078900..70084218) extracted from Lotus japonicus Gifu genome v1.2.
ATCATCTTCATCTTTCGTTTATCTGTCTTCTTCATTTCTTCACCCCTCTCTTTCGAGGGTTTTTTTTTTTTCTCCCCTTT TATTTTCCTTTTTGTATTTTTTCCTTCTGTTTTCTCTTGTTTTTCAATTTTTTTTCTTTTCTAGTTTCATTTCCGTTCCC CTTTCTTCTTCTTCTTCTTCTTCTTCCTCTGCACTGCAACCCTAATCCTCGAATTGAAGATGCAGCCAGAGAGATTAAGG CAACAAGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTCACACCCCCTCAGGTTCCTCTTCTCCCTTTCCT TCCTTTCATTTTCTCAATTTATCGTTTCCTTTTCCCTTCAATTATACTTATTCATCACGTTTTCTGCTTCAATTTCACTC AATCTCTGTTTGTTATCTTCGTGATTGCTGTTTGCACTTCACTCTGCTGCTAATTCATCAACCTCAACCTTATTTGAATT ACCCTACAATTTTGATTTCTTACAATTCATATTACAATTTAGGTTTTTTTCATATTAGTGGAAACCTTAGGTTTTTCTAT GATTTGGTATGTGTGTTTTGTCTGATTAGATTAGCTGAGAGGAGAGTGGATAATCACAATTTTGCTTTTAGGATTGCTTT TTTCCTTTTTCTTTTCTTTGTTTTTTTACATTTTTATTTTGCAGATAGAACCTATCATGAGTGGGAATCTGCCTCCTGGC TTTGATTCGAGTACATGCCGCAGTGTGTGAGTGTTAATAGACATTTTCTTTTTATTTTTTTTTATAAATTTCTTCGGTTC CGTTGTTTTTTTCTTTTGTTTTTGCCATTTTTCCCAGTTTAGCTGCCTTAAAGGATTTGTTGACTTAATTCTTTCATCTT AGATAATCTTTGTAATGAGTTATTTTTCTCAAAATTTTGTTATTGGTTTCTATCGTTTTATAGTAGGTGAATTCAATTCC TTTAGTCTACTGGCTTATGAAGTCTTTCTTTGCTTTATGTTTTGCATTTTGTATATCTAATCACTCTTGAGGAAATGCAG CTATGTGGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTATTCGCAGGTGCAGGCGCTCTTGAAGGAT GCAAGCTTATTCGGAAAGAGAAGGTCAGTTTTTTTTATAATGATCTCTTCAAACAGAAAATAAAAGGAATGATTAATAAT TTTATAGAGTACTTGATTCCTGTTTGCTGTACTAGTTTTTTATTGGCTAAAAAGTATACGGGTAGGCAATAGACATATTG TTTTTTCTTTTGTCATCTCAATCATGATGATATGCTTTATACTGTCATCTGCAGTCATCGTATGGCTTTGTGGACTACTA TGATCGAAGTTCAGCTGCATTTGCTATTGTAACCCTCAATGGGAGGAATCTGTATGTGGAATCTTCCTTTGAAGATTTTG AGTTTTGGTACAACTTTTATTGGTTTAATGTTTTAATGCGTTGTCTGCAGTTTTGGTCAGCCTATTAAAGTTAATTGGGC ATATGCTAGAAGCCAGAGAGAGGACACCTCAGGTTATTTTTTTGCTGACCATGCACTTTTGGAGGTCATATTGCCGTGCC TTACTTTGTGGAATGACAAATTTACATTCTTCCTTCATTTATTTTCAGGCCACTTTAATATATTTGTTGGTGACCTTAGT CCCGAGGTTACAGATGCAACATTATACGCTTGCTTCTCTGCATATCCTAGTTGTTCGTAAGTATTTATATGCCTTTTGTA TTTTTTTTGTTATCCTGGTTAACTAGGGATTTTTTTTGGAAGTACTTACACCTGAACATAATCTGATCTGAAATCAATTC ATGTTCATATTGCAGAGATGCAAGGGTAATGTGGGATCAGCAGACAGGTCGATCCAGGGGTTTTGGATTTGTCTCTTTTC GGAATCAGCAGGCATGAAATTATTGCTTATCTTCTCCCATTTGTTCTCTTTTCTTACAGCCTTTATCAATTTCTGTGTGT TTTCCAAGCTAATGGTGTTTTGGTTTTGTATTCAATTTATCAGGATGCCCAAAGTGCTATTAATGATCTCACTGGTAAGA TGTTTTAATTATGTAAATGCTAATTTTTCATTTGTAAAATTCTCCCTGTGATTTATGAAACTAATGTTTAGGAGTATAGT TGAAAGTATGTATATGATTATCAAACCTCCAATACCATTTAATTTATATATTAGTTGTCAACTTTTTAAGATACAGCATT GTTTAAACTAGAAATTCGACAAAAGATAGAGAAGAAAATGCACTATATTTTTTCAGTAACAGGCCTGATTAAGGTGATCC AGGACCTTAGTTTATCAGTGTGTACAATGTAGAGTAGAAAGAAGAAAAGAAAAATGGCTCCAGGCATTTGAGAGGCCTAG TCTCTCCCAAGGTCCCAAGTCAAAATCCAGCCCACTCCCCCTACCTCACGTCCCATGCTTATACTCTTTCATAATCCACG TGCCCCCCTATCCTACGTACTGCCAACTAGGAAATTAGTTAGTTCCTCTCTCCTTAATCCTTATTGAGTGCATCACACTT ATTGTGCCATCTCACATAAACCTTAGTAGTCTTGTGCTGTGGGCTTGCATCAGCTCTCTCCCCTTCAGAATTCACCTTGT CCCCAATGGAAAATCAGTCTAGGAGAAAGAGCTAATGGCTGTTGCTGTTGTATTGGCTGTTCAAAGTGGAGACACTACCG GGGTTTGATTTTGAGGTCAAGAATAAGCCTGGGATTGAGAACAAAGCAGCAGTTGCCCTTTCTAGAAAATTGCAGTTTTC AGCCCCATCTACTTTACAATTCTATGAATGGGATTACTTGGAAGAGTAAATACAAAAACTGAAGGATGACAGGTTGAGTG AAGTTATGAATCATATTGGGCAGTGGGCCCGCATCAAATATTCTGCAAATCTTCCTATTACTTTATAGAGAAAGCATTAC ACAAAAAAGTAAATGCATTTATTATCTTGAAAATATAAAAAAATAATTACTTTCGCTATATAGTAATTAGAAGGATTATT AAAAGGATTTAGAAATATGCTTAAAACTATTCCATATCTTGCAGCAACCTTGAACCGAATTCCCTTCTTTTAGTAGAAGT TATATGTAATATACATATGATCCCTGTTCCATATTTAAACATATCATATGGGGTTCTGATGGTGGGACATAATTGTGCTG CTGTTATTGCTGAAGGATCAATGAACACTTCACCTGGTGTTTTGGTCCTTGAGCATGTGATATTCATGTCTTCACCATCA TAGTGATAATTTTAATGCGATGTTTGGTTACTTAAATTTCTGTTTTCACAATGTTTAGTACATAGCTTATACTGCTTCAG TTGTATCTGAAATTTTTAATGTTTTTCCTGATACACCAGGGAAGTGGCTTGGAAGTAGACAAATTCGTTGTAATTGGGCC TCAAAAGGGGCTAATGCCAATGATGAAAAGCAGAGCTCAGATTCCAAAAATGTTGTGGAGTTAACTAATGGAACATCTGG TGAGATTGAGTTTTTTGTACTCAAAAAGTACTAAAATTCCATTTACCGGGCTCCTCATTTTTTTCTCTTTATTTTGTGGT TTTAAAAGGCCATTGAATTGAATTATAGTTTTCATTGTCTGTTTCTTCAAATTATCTTCAATTGAACCCAATATCAGCTT GTCAAGCTGCTGATTTAATATTCTGGTTTTCTTTTGTATATGACATCATGCTTGATAATTTTCAAATATTTATTTTTCTG TTAAGAATAGTTGCCTGATTATTGATTTTTTCTTGGAGAATGATCTGTATTTCAAATTGTTTTTTTATTATAGGAAGCCA GGAAATAACCAATGATGATGCTCCAGAGAAGAATCCTCAGTACACAACTGTTTATGTTGGCAATCTTGCTCCAGAGGCAA GGATTAGTATTATTTTCTGACAGATTTTACCTATGTAGTCCTTCATAGTTCAAATCTACCTTTAACTGAACGTACTTTTT CTGGCTATTTAAATCTGTAATATAAACTGACCTTTAGCCATGTGCGTGTGTATGGAAGTACCTCAGTGCTGGAAACTAGA TTTGGAACTACATTAGATATGGATAGCACAGTCCTGAAAATCCAGTTTGTTCTGAAATTGCTTTATGACTATTCTCATAG GCTGCGACCTTGCAGGTTACTTCTGTTGATCTCCATCAACATTTTCATTCCCTTGGTGCTGGAACTATTGAAGACGTTAG GGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGCACCCATGCTGAAGCAGCTCTTGCTATACAAATGGGTAATG CTCGGGTTCTGTTTGGCAAGCCTATCAAGGTACATGGCTAATTCGCAGGACATTTATTTGCTGATAATTCTTTCATGTTT TAGTATGTCCTATTGTTATTACTGCGTTATCTATGACTTCTGGTTTAGAGTTATTGATGCTTGAAGAAAATGTGTCGTTT TAAGGATTTATTACGGAACTGCATAGTTTTTTTCTTTCTTTCTTAGAATCCCCTTTGTTAAACTATTCTTGCATCTTAAC CTCGACCTAAGGCTACATAAATGTTGTACCTAATCTTGTCGTTATTTTGCAGTGTTCATGGGGTAGCAAACCCACTCCTC CAGGAGCAGCCTCTTCTCCTCTTCCCCTTCCGCCACCGTCTTCTGCCCCTGTGCCTGCTGGATTTTCACTTGCTAGTCTT GCAGCTTATGAACGCCAGATGGCATTAAGCAGAATGAATGGTGCACATGCTGCCCTTCTTCAACAGCAGGGTTATCAAAA TGCCGCGAAGCAGGCAGCCATGGGAATGGGTGCTCTCGGGGCTGCTGCTTACGATACTGGATTCCAGGGTGTTGGGACCA CCCAGCATCTTATGTACTATCCTTAAATTATGTTGTTCAGCTACCTAGTATAAACAAGGGAAGATTGAAGTCTATTGAAC CGCCATAATGGTTCAACAGTACTGGTAACCCTTCTCTGCCCTCTTTTTATCCTTTCACAGTATTTTACTTCTGCACTCGT TTGGAATTATGTAACACATTTGTATATACAGTATTACTGCACTTGCTTAGCAGTTGGATACATGGATGATTTGTCTTCGC TTTCTAATGGCGAAGGACGAAGGTTATTTCCTGAATAGAATATTTATTTTACTAATATGGAAAGTATAAATGAATAGTTA TGTAAAATTTATCTTAATCGAAAAAATGGTTTGATAGTGAATTATTAGTTAAAAATATTAGTATGATGATATAAAAATAT TTTTCAGAATAATAAGAATCAGTATATGTAAAAAAGTCG
CDS sequence (LotjaGi4g1v0322500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCCAGAGAGATTAAGGCAACAAGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTCACACCCCCTCA GATAGAACCTATCATGAGTGGGAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTCTATGTGGGCAACATTC ATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTATTCGCAGGTGCAGGCGCTCTTGAAGGATGCAAGCTTATTCGGAAA GAGAAGTCATCGTATGGCTTTGTGGACTACTATGATCGAAGTTCAGCTGCATTTGCTATTGTAACCCTCAATGGGAGGAA TCTTTTTGGTCAGCCTATTAAAGTTAATTGGGCATATGCTAGAAGCCAGAGAGAGGACACCTCAGGCCACTTTAATATAT TTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACATTATACGCTTGCTTCTCTGCATATCCTAGTTGTTCAGATGCA AGGGTAATGTGGGATCAGCAGACAGGTCGATCCAGGGGTTTTGGATTTGTCTCTTTTCGGAATCAGCAGGATGCCCAAAG TGCTATTAATGATCTCACTGGGAAGTGGCTTGGAAGTAGACAAATTCGTTGTAATTGGGCCTCAAAAGGGGCTAATGCCA ATGATGAAAAGCAGAGCTCAGATTCCAAAAATGTTGTGGAGTTAACTAATGGAACATCTGGAAGCCAGGAAATAACCAAT GATGATGCTCCAGAGAAGAATCCTCAGTACACAACTGTTTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTTGATCT CCATCAACATTTTCATTCCCTTGGTGCTGGAACTATTGAAGACGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGA GATACAGCACCCATGCTGAAGCAGCTCTTGCTATACAAATGGGTAATGCTCGGGTTCTGTTTGGCAAGCCTATCAAGTGT TCATGGGGTAGCAAACCCACTCCTCCAGGAGCAGCCTCTTCTCCTCTTCCCCTTCCGCCACCGTCTTCTGCCCCTGTGCC TGCTGGATTTTCACTTGCTAGTCTTGCAGCTTATGAACGCCAGATGGCATTAAGCAGAATGAATGGTGCACATGCTGCCC TTCTTCAACAGCAGGGTTATCAAAATGCCGCGAAGCAGGCAGCCATGGGAATGGGTGCTCTCGGGGCTGCTGCTTACGAT ACTGGATTCCAGGGTGTTGGGACCACCCAGCATCTTATGTACTATCCTTAA
Protein sequence (LotjaGi4g1v0322500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQPERLRQQAMMQHSLYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRK EKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDA RVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITN DDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKC SWGSKPTPPGAASSPLPLPPPSSAPVPAGFSLASLAAYERQMALSRMNGAHAALLQQQGYQNAAKQAAMGMGALGAAAYD TGFQGVGTTQHLMYYP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 364 | 363 | 6.8E-207 | – | |
| Gene3D | 2 | 127 | 126 | 1.9E-21 | ||
| PANTHER | 2 | 364 | 363 | 6.8E-207 | – | |
| SUPERFAMILY | 26 | 126 | 101 | 6.45E-23 | ||
| ProSiteProfiles | 46 | 120 | 75 | 15.067 | ||
| SMART | 47 | 116 | 70 | 1.3E-16 | ||
| CDD | 48 | 118 | 71 | 2.78676E-34 | – | |
| Pfam | 48 | 114 | 67 | 2.1E-13 | ||
| SUPERFAMILY | 124 | 215 | 92 | 2.69E-27 | ||
| Gene3D | 128 | 225 | 98 | 2.6E-25 | ||
| ProSiteProfiles | 131 | 209 | 79 | 17.575 | ||
| SMART | 132 | 205 | 74 | 2.0E-24 | ||
| CDD | 132 | 206 | 75 | 3.44743E-52 | – | |
| Pfam | 133 | 203 | 71 | 7.2E-20 | ||
| MobiDBLite | 210 | 248 | 39 | - | – | |
| Gene3D | 230 | 328 | 99 | 2.8E-23 | ||
| SUPERFAMILY | 242 | 330 | 89 | 9.91E-23 | ||
| ProSiteProfiles | 251 | 325 | 75 | 15.067 | ||
| CDD | 251 | 325 | 75 | 8.06212E-35 | – | |
| SMART | 252 | 321 | 70 | 7.3E-19 | ||
| Pfam | 253 | 319 | 67 | 2.5E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0322500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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