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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0322500 |
| Transcript ID | LotjaGi4g1v0322500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT1G17370.1 oligouridylate binding protein 1B; Swiss-Prot: sp|Q9M427|UBP1_NICPL Oligouridylate-binding protein 1; TrEMBL-Plants: tr|A0A0L9UYK4|A0A0L9UYK4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0322500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70079313..70083177) extracted from Lotus japonicus Gifu genome v1.2.
TATGTGGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTATTCGCAGGTGCAGGCGCTCTTGAAGGATG CAAGCTTATTCGGAAAGAGAAGGTCAGTTTTTTTTATAATGATCTCTTCAAACAGAAAATAAAAGGAATGATTAATAATT TTATAGAGTACTTGATTCCTGTTTGCTGTACTAGTTTTTTATTGGCTAAAAAGTATACGGGTAGGCAATAGACATATTGT TTTTTCTTTTGTCATCTCAATCATGATGATATGCTTTATACTGTCATCTGCAGTCATCGTATGGCTTTGTGGACTACTAT GATCGAAGTTCAGCTGCATTTGCTATTGTAACCCTCAATGGGAGGAATCTGTATGTGGAATCTTCCTTTGAAGATTTTGA GTTTTGGTACAACTTTTATTGGTTTAATGTTTTAATGCGTTGTCTGCAGTTTTGGTCAGCCTATTAAAGTTAATTGGGCA TATGCTAGAAGCCAGAGAGAGGACACCTCAGGTTATTTTTTTGCTGACCATGCACTTTTGGAGGTCATATTGCCGTGCCT TACTTTGTGGAATGACAAATTTACATTCTTCCTTCATTTATTTTCAGGCCACTTTAATATATTTGTTGGTGACCTTAGTC CCGAGGTTACAGATGCAACATTATACGCTTGCTTCTCTGCATATCCTAGTTGTTCGTAAGTATTTATATGCCTTTTGTAT TTTTTTTGTTATCCTGGTTAACTAGGGATTTTTTTTGGAAGTACTTACACCTGAACATAATCTGATCTGAAATCAATTCA TGTTCATATTGCAGAGATGCAAGGGTAATGTGGGATCAGCAGACAGGTCGATCCAGGGGTTTTGGATTTGTCTCTTTTCG GAATCAGCAGGCATGAAATTATTGCTTATCTTCTCCCATTTGTTCTCTTTTCTTACAGCCTTTATCAATTTCTGTGTGTT TTCCAAGCTAATGGTGTTTTGGTTTTGTATTCAATTTATCAGGATGCCCAAAGTGCTATTAATGATCTCACTGGTAAGAT GTTTTAATTATGTAAATGCTAATTTTTCATTTGTAAAATTCTCCCTGTGATTTATGAAACTAATGTTTAGGAGTATAGTT GAAAGTATGTATATGATTATCAAACCTCCAATACCATTTAATTTATATATTAGTTGTCAACTTTTTAAGATACAGCATTG TTTAAACTAGAAATTCGACAAAAGATAGAGAAGAAAATGCACTATATTTTTTCAGTAACAGGCCTGATTAAGGTGATCCA GGACCTTAGTTTATCAGTGTGTACAATGTAGAGTAGAAAGAAGAAAAGAAAAATGGCTCCAGGCATTTGAGAGGCCTAGT CTCTCCCAAGGTCCCAAGTCAAAATCCAGCCCACTCCCCCTACCTCACGTCCCATGCTTATACTCTTTCATAATCCACGT GCCCCCCTATCCTACGTACTGCCAACTAGGAAATTAGTTAGTTCCTCTCTCCTTAATCCTTATTGAGTGCATCACACTTA TTGTGCCATCTCACATAAACCTTAGTAGTCTTGTGCTGTGGGCTTGCATCAGCTCTCTCCCCTTCAGAATTCACCTTGTC CCCAATGGAAAATCAGTCTAGGAGAAAGAGCTAATGGCTGTTGCTGTTGTATTGGCTGTTCAAAGTGGAGACACTACCGG GGTTTGATTTTGAGGTCAAGAATAAGCCTGGGATTGAGAACAAAGCAGCAGTTGCCCTTTCTAGAAAATTGCAGTTTTCA GCCCCATCTACTTTACAATTCTATGAATGGGATTACTTGGAAGAGTAAATACAAAAACTGAAGGATGACAGGTTGAGTGA AGTTATGAATCATATTGGGCAGTGGGCCCGCATCAAATATTCTGCAAATCTTCCTATTACTTTATAGAGAAAGCATTACA CAAAAAAGTAAATGCATTTATTATCTTGAAAATATAAAAAAATAATTACTTTCGCTATATAGTAATTAGAAGGATTATTA AAAGGATTTAGAAATATGCTTAAAACTATTCCATATCTTGCAGCAACCTTGAACCGAATTCCCTTCTTTTAGTAGAAGTT ATATGTAATATACATATGATCCCTGTTCCATATTTAAACATATCATATGGGGTTCTGATGGTGGGACATAATTGTGCTGC TGTTATTGCTGAAGGATCAATGAACACTTCACCTGGTGTTTTGGTCCTTGAGCATGTGATATTCATGTCTTCACCATCAT AGTGATAATTTTAATGCGATGTTTGGTTACTTAAATTTCTGTTTTCACAATGTTTAGTACATAGCTTATACTGCTTCAGT TGTATCTGAAATTTTTAATGTTTTTCCTGATACACCAGGGAAGTGGCTTGGAAGTAGACAAATTCGTTGTAATTGGGCCT CAAAAGGGGCTAATGCCAATGATGAAAAGCAGAGCTCAGATTCCAAAAATGTTGTGGAGTTAACTAATGGAACATCTGGT GAGATTGAGTTTTTTGTACTCAAAAAGTACTAAAATTCCATTTACCGGGCTCCTCATTTTTTTCTCTTTATTTTGTGGTT TTAAAAGGCCATTGAATTGAATTATAGTTTTCATTGTCTGTTTCTTCAAATTATCTTCAATTGAACCCAATATCAGCTTG TCAAGCTGCTGATTTAATATTCTGGTTTTCTTTTGTATATGACATCATGCTTGATAATTTTCAAATATTTATTTTTCTGT TAAGAATAGTTGCCTGATTATTGATTTTTTCTTGGAGAATGATCTGTATTTCAAATTGTTTTTTTATTATAGGAAGCCAG GAAATAACCAATGATGATGCTCCAGAGAAGAATCCTCAGTACACAACTGTTTATGTTGGCAATCTTGCTCCAGAGGCAAG GATTAGTATTATTTTCTGACAGATTTTACCTATGTAGTCCTTCATAGTTCAAATCTACCTTTAACTGAACGTACTTTTTC TGGCTATTTAAATCTGTAATATAAACTGACCTTTAGCCATGTGCGTGTGTATGGAAGTACCTCAGTGCTGGAAACTAGAT TTGGAACTACATTAGATATGGATAGCACAGTCCTGAAAATCCAGTTTGTTCTGAAATTGCTTTATGACTATTCTCATAGG CTGCGACCTTGCAGGTTACTTCTGTTGATCTCCATCAACATTTTCATTCCCTTGGTGCTGGAACTATTGAAGACGTTAGG GTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGCACCCATGCTGAAGCAGCTCTTGCTATACAAATGGGTAATGC TCGGGTTCTGTTTGGCAAGCCTATCAAGGTACATGGCTAATTCGCAGGACATTTATTTGCTGATAATTCTTTCATGTTTT AGTATGTCCTATTGTTATTACTGCGTTATCTATGACTTCTGGTTTAGAGTTATTGATGCTTGAAGAAAATGTGTCGTTTT AAGGATTTATTACGGAACTGCATAGTTTTTTTCTTTCTTTCTTAGAATCCCCTTTGTTAAACTATTCTTGCATCTTAACC TCGACCTAAGGCTACATAAATGTTGTACCTAATCTTGTCGTTATTTTGCAGTGTTCATGGGGTAGCAAACCCACTCCTCC AGGAGCAGCCTCTTCTCCTCTTCCCCTTCCGCCACCGTCTTCTGCCCCTGTGCCTGCTGGATTTTCACTTGCTAGTCTTG CAGCTTATGAACGCCAGATGGCATTAAGCAGAATGAATGGTGCACATGCTGCCCTTCTTCAACAGCAGGGTTATCAAAAT GCCGCGAAGCAGGCAGCCATGGGAATGGGTGCTCTCGGGGCTGCTGCTTACGATACTGGATTCCAGGGTGTTGGGACCAC CCAGCATCTTATGTACTATCCTTAA
CDS sequence (LotjaGi4g1v0322500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGATCAGCAGACAGGTCGATCCAGGGGTTTTGGATTTGTCTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCTAT TAATGATCTCACTGGGAAGTGGCTTGGAAGTAGACAAATTCGTTGTAATTGGGCCTCAAAAGGGGCTAATGCCAATGATG AAAAGCAGAGCTCAGATTCCAAAAATGTTGTGGAGTTAACTAATGGAACATCTGGAAGCCAGGAAATAACCAATGATGAT GCTCCAGAGAAGAATCCTCAGTACACAACTGTTTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTTGATCTCCATCA ACATTTTCATTCCCTTGGTGCTGGAACTATTGAAGACGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACA GCACCCATGCTGAAGCAGCTCTTGCTATACAAATGGGTAATGCTCGGGTTCTGTTTGGCAAGCCTATCAAGTGTTCATGG GGTAGCAAACCCACTCCTCCAGGAGCAGCCTCTTCTCCTCTTCCCCTTCCGCCACCGTCTTCTGCCCCTGTGCCTGCTGG ATTTTCACTTGCTAGTCTTGCAGCTTATGAACGCCAGATGGCATTAAGCAGAATGAATGGTGCACATGCTGCCCTTCTTC AACAGCAGGGTTATCAAAATGCCGCGAAGCAGGCAGCCATGGGAATGGGTGCTCTCGGGGCTGCTGCTTACGATACTGGA TTCCAGGGTGTTGGGACCACCCAGCATCTTATGTACTATCCTTAA
Protein sequence (LotjaGi4g1v0322500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDD APEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSW GSKPTPPGAASSPLPLPPPSSAPVPAGFSLASLAAYERQMALSRMNGAHAALLQQQGYQNAAKQAAMGMGALGAAAYDTG FQGVGTTQHLMYYP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 204 | 204 | 8.6E-104 | – | |
| PANTHER | 1 | 204 | 204 | 8.6E-104 | – | |
| SUPERFAMILY | 1 | 54 | 54 | 6.92E-15 | ||
| Gene3D | 1 | 65 | 65 | 6.8E-14 | ||
| ProSiteProfiles | 1 | 47 | 47 | 11.793 | ||
| Pfam | 2 | 41 | 40 | 1.7E-9 | ||
| MobiDBLite | 48 | 87 | 40 | - | – | |
| Gene3D | 68 | 167 | 100 | 1.0E-23 | ||
| SUPERFAMILY | 80 | 168 | 89 | 3.8E-23 | ||
| ProSiteProfiles | 89 | 163 | 75 | 15.067 | ||
| CDD | 89 | 163 | 75 | 1.24871E-35 | – | |
| SMART | 90 | 159 | 70 | 7.3E-19 | ||
| Pfam | 91 | 157 | 67 | 1.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0322500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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