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LotjaGi4g1v0322500.4

Overview

Field Value
Gene ID LotjaGi4g1v0322500
Transcript ID LotjaGi4g1v0322500.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description RNA-binding family protein; TAIR: AT1G17370.1 oligouridylate binding protein 1B; Swiss-Prot: sp|Q9M427|UBP1_NICPL Oligouridylate-binding protein 1; TrEMBL-Plants: tr|I1MS87|I1MS87_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0322500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:70082282..70083999) extracted from Lotus japonicus Gifu genome v1.2.

ATGCAGCCAGAGAGATTAAGGCAACAAGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTCACACCCCCTCA GGTTCCTCTTCTCCCTTTCCTTCCTTTCATTTTCTCAATTTATCGTTTCCTTTTCCCTTCAATTATACTTATTCATCACG TTTTCTGCTTCAATTTCACTCAATCTCTGTTTGTTATCTTCGTGATTGCTGTTTGCACTTCACTCTGCTGCTAATTCATC AACCTCAACCTTATTTGAATTACCCTACAATTTTGATTTCTTACAATTCATATTACAATTTAGGTTTTTTTCATATTAGT GGAAACCTTAGGTTTTTCTATGATTTGGTATGTGTGTTTTGTCTGATTAGATTAGCTGAGAGGAGAGTGGATAATCACAA TTTTGCTTTTAGGATTGCTTTTTTCCTTTTTCTTTTCTTTGTTTTTTTACATTTTTATTTTGCAGATAGAACCTATCATG AGTGGGAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTGTGAGTGTTAATAGACATTTTCTTTTTATTTTT TTTTATAAATTTCTTCGGTTCCGTTGTTTTTTTCTTTTGTTTTTGCCATTTTTCCCAGTTTAGCTGCCTTAAAGGATTTG TTGACTTAATTCTTTCATCTTAGATAATCTTTGTAATGAGTTATTTTTCTCAAAATTTTGTTATTGGTTTCTATCGTTTT ATAGTAGGTGAATTCAATTCCTTTAGTCTACTGGCTTATGAAGTCTTTCTTTGCTTTATGTTTTGCATTTTGTATATCTA ATCACTCTTGAGGAAATGCAGCTATGTGGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTATTCGCAG GTGCAGGCGCTCTTGAAGGATGCAAGCTTATTCGGAAAGAGAAGGTCAGTTTTTTTTATAATGATCTCTTCAAACAGAAA ATAAAAGGAATGATTAATAATTTTATAGAGTACTTGATTCCTGTTTGCTGTACTAGTTTTTTATTGGCTAAAAAGTATAC GGGTAGGCAATAGACATATTGTTTTTTCTTTTGTCATCTCAATCATGATGATATGCTTTATACTGTCATCTGCAGTCATC GTATGGCTTTGTGGACTACTATGATCGAAGTTCAGCTGCATTTGCTATTGTAACCCTCAATGGGAGGAATCTGTATGTGG AATCTTCCTTTGAAGATTTTGAGTTTTGGTACAACTTTTATTGGTTTAATGTTTTAATGCGTTGTCTGCAGTTTTGGTCA GCCTATTAAAGTTAATTGGGCATATGCTAGAAGCCAGAGAGAGGACACCTCAGGTTATTTTTTTGCTGACCATGCACTTT TGGAGGTCATATTGCCGTGCCTTACTTTGTGGAATGACAAATTTACATTCTTCCTTCATTTATTTTCAGGCCACTTTAAT ATATTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACATTATACGCTTGCTTCTCTGCATATCCTAGTTGTTCGTA AGTATTTATATGCCTTTTGTATTTTTTTTGTTATCCTGGTTAACTAGGGATTTTTTTTGGAAGTACTTACACCTGAACAT AATCTGATCTGAAATCAATTCATGTTCATATTGCAGAGATGCAAGGGTAATGTGGGATCAGCAGACAGGTCGATCCAGGG GTTTTGGATTTGTCTCTTTTCGGAATCAGCAGGCATGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0322500.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGCCAGAGAGATTAAGGCAACAAGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTCACACCCCCTCA GATAGAACCTATCATGAGTGGGAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTCTATGTGGGCAACATTC ATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTATTCGCAGGTGCAGGCGCTCTTGAAGGATGCAAGCTTATTCGGAAA GAGAAGTCATCGTATGGCTTTGTGGACTACTATGATCGAAGTTCAGCTGCATTTGCTATTGTAACCCTCAATGGGAGGAA TCTTTTTGGTCAGCCTATTAAAGTTAATTGGGCATATGCTAGAAGCCAGAGAGAGGACACCTCAGGCCACTTTAATATAT TTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACATTATACGCTTGCTTCTCTGCATATCCTAGTTGTTCAGATGCA AGGGTAATGTGGGATCAGCAGACAGGTCGATCCAGGGGTTTTGGATTTGTCTCTTTTCGGAATCAGCAGGCATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0322500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQPERLRQQAMMQHSLYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRK EKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDA RVMWDQQTGRSRGFGFVSFRNQQA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR47640
1 184 184 3.6E-123 –
PANTHER
PTHR47640:SF27
1 184 184 3.6E-123 –
Gene3D
G3DSA:3.30.70.330
1 131 131 2.5E-22
IPR012677
SUPERFAMILY
SSF54928
45 183 139 5.91E-37
IPR035979
ProSiteProfiles
PS50102
46 120 75 15.067
IPR000504
SMART
SM00360
47 116 70 1.3E-16
IPR000504
Pfam
PF00076
48 114 67 4.8E-14
IPR000504
CDD
cd12352
48 118 71 5.95091E-37 –
ProSiteProfiles
PS50102
131 184 54 12.884
IPR000504
SMART
SM00360
132 184 53 0.071
IPR000504
Gene3D
G3DSA:3.30.70.330
132 179 48 1.4E-15
IPR012677
Pfam
PF00076
133 182 50 1.9E-13
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0322500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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