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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0322700 |
| Transcript ID | LotjaGi4g1v0322700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Jasmonate zim-domain protein; TAIR: AT1G19180.1 jasmonate-zim-domain protein 1; Swiss-Prot: sp|Q9LMA8|TI10A_ARATH Protein TIFY 10A; TrEMBL-Plants: tr|I1MS89|I1MS89_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0322700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70091115..70093040) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTTTATTATTAATTTAATATATATCCTCCGTGACCAAACATTATAACTACCATCTCCTTCATTCACAATCCTCATTC AAAGCGTGCCGTTTCCACCATCATAACTACTTTGTGTTCTTCTCAAACGATAATTCTCTCAAGTCTCAACCACGGTTTTT GCGTTTTCCTATTTCCTCTCTCTATAAATCTGCACTTAGCAGCTTTTCTAGGTAGATTCATTATGTCGAGTTCATCGGAG ATTTCAGCTGCTAAATCGCCGGAGAAATCCACTACGTTCTCTCAAACCTGCAATTTACTAAGCCAATACCTTAAAGAAAA GGGTAGCTTCGGAGACCTCACCTTAGGCATGGAACGCAACGTTCAAGGTAAAAATCATATTTCCACTTATGCCCCAAAAT TCTTCTTAATTTCTGTTTTCCCCCCACTGAACCAAAATTCGGTTATGAAAACGTGGGAAAACAACGACAATTTCGTTAAA ATCTGTTTTTAGATATTCATTTTATTCCATCCGTAATTCCATCCGTACTCCTTTCACTTCTTTATAAATTCAACACATGT CTTTTGCTTTCAAATTGGTTCAAAGGAAGATAAGGTTGATTTTCATGTATTTAACCGTGTACAGAGTAATTGTTGGTAAT CACAAACTTCTACTTCCATTTTTTCTCTTCTAAACTTTTCTGAATATGTGTTTAACAGGGTCCCCTGTAACCACTATGGA GTTGTTTCCTATGGCAACACAAAACTTGAAGAGTATGAATTTGTTCTATCCACCACAACAATCTGAGGTTCCAACATTGG TGAAATCAAGGTGTGTTTGTTGTTCTTTCTTCTTAATCAACTAATGATTTTATTTTGCATGCACACTTGAAAAAGTTAAG TGTACAATTTCATAATGATTAATATCCAATTTTTTTATTTTTCTCCAGTGCTATGGGCAATGAACCTAAAGCTGCACAGT TGACAATGTTTTATGAGGGGCAAGTTATTGTGTTTGATGATTTTCCTGCTGAGAAAGTGAAGGAGATCATGGCATATGCC AGCAAGGGAGTCTCTCAAAGCCAGAACAACAACAACTCTGCATATGCTTGCAATCAGAATCAGCCTTCAATTAGGCCAAT TGTTCATGGTAATTTCCTTTATTTGATCATATTTGGAGTCTTGGAGACAATTGAAGTGAATATTTTTGTATTATGGTTTA TGGATCATTATTATTTTTGTTTCTGATTATAAATTTCATGTCTACACAGATCTACCAATTGCTAGGAAAGTTTCCCTCCA CCGTTTCCTGGAGAAGAGGAAGGATAGGTAAGCCTTTCAAACAATTTATTACCCTCTTTTTTTACTATCATCATTGATTG ACATTTTGAAACCTGATAAATTTTGTCTCAAAAGTTAGTCCTCTTTTTTCATGCAATTGAACTATAGTTATTCCCTTGTG TTGTTTTGGCTTAGTTGATTAACATTGTTATTTTGTCATGTTGTGTTTGCAGAATCTCTTCCAAAGCACCATATCAAATC TCTGCTCCTGAGAAACCTGTTGAATCCATTTCATGGCTTGGGTTAGGTGCTACACCAACACAAATCTGATCTGAGTGGAA TCATAGTTTTATTTTAAGTAGTTTTTGGCCTTTTTTATGTTAATATTTGATGGGCATGTTTGTCAATCTGCTCCACTATG AATATGTTAGATATAACCTTAGTCAGTGAATTGGAATATTTCCTGTAATTAGCATTTCAAAGTTTTGGATTCACTGATCC CATTTCTTTGTTTCTTCTTTCATTTGTTGTGTTCCTTTCATCCTCTCCTTCATTTGTTTCTTCCTTCATTTGTTGTGAAC AATAACAACCCCATAAACTAAGGATTGTAATTTTATTTGCACGAATTTGAATTAATTTTGGAATGAATTAAATGTGAAGA ATTGTC
CDS sequence (LotjaGi4g1v0322700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGAGTTCATCGGAGATTTCAGCTGCTAAATCGCCGGAGAAATCCACTACGTTCTCTCAAACCTGCAATTTACTAAG CCAATACCTTAAAGAAAAGGGTAGCTTCGGAGACCTCACCTTAGGCATGGAACGCAACGTTCAAGGGTCCCCTGTAACCA CTATGGAGTTGTTTCCTATGGCAACACAAAACTTGAAGAGTATGAATTTGTTCTATCCACCACAACAATCTGAGGTTCCA ACATTGGTGAAATCAAGTGCTATGGGCAATGAACCTAAAGCTGCACAGTTGACAATGTTTTATGAGGGGCAAGTTATTGT GTTTGATGATTTTCCTGCTGAGAAAGTGAAGGAGATCATGGCATATGCCAGCAAGGGAGTCTCTCAAAGCCAGAACAACA ACAACTCTGCATATGCTTGCAATCAGAATCAGCCTTCAATTAGGCCAATTGTTCATGATCTACCAATTGCTAGGAAAGTT TCCCTCCACCGTTTCCTGGAGAAGAGGAAGGATAGAATCTCTTCCAAAGCACCATATCAAATCTCTGCTCCTGAGAAACC TGTTGAATCCATTTCATGGCTTGGGTTAGGTGCTACACCAACACAAATCTGA
Protein sequence (LotjaGi4g1v0322700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSSEISAAKSPEKSTTFSQTCNLLSQYLKEKGSFGDLTLGMERNVQGSPVTTMELFPMATQNLKSMNLFYPPQQSEVP TLVKSSAMGNEPKAAQLTMFYEGQVIVFDDFPAEKVKEIMAYASKGVSQSQNNNNSAYACNQNQPSIRPIVHDLPIARKV SLHRFLEKRKDRISSKAPYQISAPEKPVESISWLGLGATPTQI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 195 | 190 | 9.2E-61 | – | |
| PANTHER | 6 | 195 | 190 | 9.2E-61 | ||
| ProSiteProfiles | 90 | 125 | 36 | 16.371 | ||
| SMART | 90 | 125 | 36 | 2.2E-12 | ||
| Pfam | 91 | 124 | 34 | 8.1E-17 | ||
| Pfam | 155 | 180 | 26 | 7.3E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0322700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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