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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0324800 |
| Transcript ID | LotjaGi4g1v0324800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Damaged dna-binding 2, putative isoform 1; TAIR: AT3G43850.2 hypothetical protein; Swiss-Prot: sp|P38386|SECF_MYCLE Protein translocase subunit SecF; TrEMBL-Plants: tr|I3S7T7|I3S7T7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0324800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70308342..70311798) extracted from Lotus japonicus Gifu genome v1.2.
AAGTAACCAACAAAGATATCTCTCTTCAAAAAAGAGATAAAAGTCATTTTTTTCTCCTAAACAGACACTTTTCTGTTCTG TCCTTGAAACACTAGTATGATTATTCATCTTAAATCCTATTAGGATAAGATGTGACTTCCTATTTTTATTTTTTTCTTTA TTTTCTACTAAAGTTCTTTATTAGAATATTGACATATTTTATTGAATAATTTTTTTGTTTTTGTATATGGATCACCTATG CTTAGAAAATTCTGATACCCATGTGCTATCAAGTCTCACCAGATATATATACCCTTAACTCTTCCATTTTACCTGCTGTT AGCATCATTCCAATTCATCTCATTTCTATTCACACCATATTCTTCATCTTCATCTTCTTCTTCTCCTCTCTCTTTCTCTC TCTACTGAAACGATGCCGTTAGCTCTGGAAACCGATCGAGGACTTGGCCTCAGAAGGTCCAGATTCATCCCCTGCGACTC GATCTACGATGAGGATATTCCGGAGGAGGATTCCGACTGCAGCGACGCCTCCTCCATCGGAAGGAACAGTGTCTCGTCGG ATGACGACTCCGACCGGGAAGACTCCGGCGAGGTTGAGGAACAGAGCACGTTCAAAAGCCCCTTAGATACCATGAATGAT TTGGAAGAGGAGTTACCCCTCAAGTAAGTTCATATTACTATATTGGTACCTTTTTCTGAACTGGGTTTTCCTCAAGTTTT AAACTTTCTGTGTAGATAACCAGCAAATCGTTGATTTGAGAACTTGGGGTTCTGTTATTTATGATTTTAGCATCTGGTTT AAGAACTATGATTGTTTTGCTGAATTTAGTAACTTTACTGTTTTACCCCTGAGTTGCTATGTGTGTTTACCCCTGATTTG GGTTTGGTATTTGGTTATGTTAGCGTTAGCAGTAAGGGAAGGGGCATCTTCTGGTTATTTATCTTGAGTAAAAAAAATCC ATACAAGTTGGATATATACCATTTTTCTTTCACTTGCTCATTGTTCATTATTTTAATGAATTGCTTTTTGGTTGGGGGTG GAAGTGGTTTACAGAATATATTTTGTTCAAAACGTGTAGTACTGTAATTGATTGGTCTAATGGGTCTCCATGATAAAAAG AAATAACTAGTGGGTTGTGGGAAGATAGAGCATCTTTCTATAGTGTTTGAGGAGTAGGGAAAAAGAAGGCTACATTCCAT GTGTAATTATAGGGCCTCATGATCTTTAATGTATCCCTGCAGGGTGAGCTTGTTCCTTGAAAAAAGACTAAAATTGATCA ATATTGATCACGAAGTCTACATTCCATGTGTAACTTCATTCTAGGTTAATTCTAGGAGTATGATGTATTTGCAGAATAGA TCATGAAATTTATGAGTCGCTTGTCATAAATTCTATTGATCCCCCTAGAATGAAGTTAAATCACCTGTATGGTTGTGATT GGACAACAGTAAAAACTGTGTGTATGGAACTGCATCTAAGTTTTGTCCTTTAGGTCACCCCTTATAAATTAAATAAGGTT TCTTAAATAGAAGCATTAAAAGCTTCCTTTATCCAAAGATATTTCATTCTTCTAAATGCATCTAGATTTATTTATCTTTC ACCTTTGTATTTCTCTAGTCTGCCTGCATCTAGACTTTGCTATGTCCAAGTACATTTCGCTCATTATACCTATGGATGTT CAATAAAGATTTTGGTTGGTTCATGAACAACCCTTCTATAACTAGTCCTTTCATTTAAATTTATTGGGTAGCTTCAATTG GATTTAGATATGACGAGATTGGGAATGGATCGTGGATTAATAGATGCAAATACCAACCCTTCTTTTGGGCTGCCATAAGT TACTTCCACTGGATTTTAAGTATTGGTTGGTGTTACAAATTGTAGGTGCCAGATTAGCTTTGAATCTGATTGATTCAATG CAAAACAGAAATGAGTAAATTTCTCCTTCTAACTATAAAGCTTTACTCGGGAATGAAAGGCTTCATCCTGTGCTATGAAA AAAACCATGCTCCTCTTATGATTCCCACTACACTGAACTTTAGTCATTGTATTTTGTCCGGACAGAGAAATTTTAGATTC CCCAACTAAAACCCTGTTTGGAAGAGCTTATTTGAGTTTATCTTATAGTATTAGCGCTTATTTTAGTGTTTGGAATTGGA ATAGCTTATAAAATTAGCTTACAACTTACCTATAAGCTTTTTTGAGCTTATTTTCATAACCTATTCAGATTAGTTTATGA ATAAGAGCTCATGCAGTTATGCTTACCTATTACATGTTTTTCAGTTTATTTCAATAAGTTTCTCAAATTAGTTTATGAAT AAGCGTTTATGCGATATCTTTTTTAATAGGGTATTTTCCCAAACACCCTAGAACTACAAGATTGTGAAACATTGGCCACT GGATATTTTTTTAAGTTTTAACATTATGGTTGGATGATGTGAAAGTTTTCAATCGGATATAGTTTTATTAACTCATGTCA TATGGTTTTTGTGTGATTCAGGAAAGGCATATCCAAGTTTTATAACGGTAAATCGAAGTCCTACACAAGCTTAGCAGATG CCGCAGCTGTAACATCCGTGCAACAAATGGCAAAGCCAGAGGACCCTTATGCCAAAAAACGAAAGGATCTGCTTGCCCGC AACATGTTAATTGCGAGGAGTCGTAGTTGTGCGTATAATCTTGGTGGAATTTCGAAGCGATCAGCTAACATAGGTGGAGG AAAATCATGTCTTAATTTGAGCAGCAGTGAGGAGGGGCAAAGCAGCGCCACATCATTATCTCCACCTTTCCCTCTTCCAC CTCTTCATCCTCATCCACATGCTCATAGTAATAAGGCATCTGCAAACAAATCACAACCTCCTCCTCCTTGGAGGACATAC TCTTGGTCTGATCTGCATTCTGTTGTTGCTGAGGTTCATGAGATATCTGGCTTGGCAATTTGTAGTGGAAACGATGGCAA TAAAGTACACTGAATTTCTTACAAATTTTAACTTTTAAGTTTCATAGCATGTAGTTTCTAGTTCACATTCGAGTTTGTTT GTAATGGGAGAAGTACTTTGTGCAAACTTTGTCTTAACATTATATGGTACTCACTAGGGTGATGTTGTATATTATAAATA GTTCAAACTTCAAAACTTTCTGTTATCTATGAGTCGTGGAAGCCTCTTTCTTGAGTGTTTGTTTACAAACTGGATAGGTG TTTAAGTGGAGAATAAGTGATTTAGGGAAAAGTTGGGTTGAATGCAATTGAAAATGTCTAATATTCAAAATATGAACGGA GTAGAATCCGCAGGTGAAATAAAAGTAACTTGAAATCAGATCTTTCAATTTTAGTAATTGCAGAACATTCTCAATGCTTC ATTTCTTAGCTACTATATTTGGTTGGGATTCGTAAGATAATACAGGTTATGCGAGTAGTTAGTTAGGTGATCAACTGCGT TGTTGATTAGTTAGAAG
CDS sequence (LotjaGi4g1v0324800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGTTAGCTCTGGAAACCGATCGAGGACTTGGCCTCAGAAGGTCCAGATTCATCCCCTGCGACTCGATCTACGATGA GGATATTCCGGAGGAGGATTCCGACTGCAGCGACGCCTCCTCCATCGGAAGGAACAGTGTCTCGTCGGATGACGACTCCG ACCGGGAAGACTCCGGCGAGGTTGAGGAACAGAGCACGTTCAAAAGCCCCTTAGATACCATGAATGATTTGGAAGAGGAG TTACCCCTCAAGAAAGGCATATCCAAGTTTTATAACGGTAAATCGAAGTCCTACACAAGCTTAGCAGATGCCGCAGCTGT AACATCCGTGCAACAAATGGCAAAGCCAGAGGACCCTTATGCCAAAAAACGAAAGGATCTGCTTGCCCGCAACATGTTAA TTGCGAGGAGTCGTAGTTGTGCGTATAATCTTGGTGGAATTTCGAAGCGATCAGCTAACATAGGTGGAGGAAAATCATGT CTTAATTTGAGCAGCAGTGAGGAGGGGCAAAGCAGCGCCACATCATTATCTCCACCTTTCCCTCTTCCACCTCTTCATCC TCATCCACATGCTCATAGTAATAAGGCATCTGCAAACAAATCACAACCTCCTCCTCCTTGGAGGACATACTCTTGGTCTG ATCTGCATTCTGTTGTTGCTGAGGTTCATGAGATATCTGGCTTGGCAATTTGTAGTGGAAACGATGGCAATAAAGTACAC TGA
Protein sequence (LotjaGi4g1v0324800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLALETDRGLGLRRSRFIPCDSIYDEDIPEEDSDCSDASSIGRNSVSSDDDSDREDSGEVEEQSTFKSPLDTMNDLEEE LPLKKGISKFYNGKSKSYTSLADAAAVTSVQQMAKPEDPYAKKRKDLLARNMLIARSRSCAYNLGGISKRSANIGGGKSC LNLSSSEEGQSSATSLSPPFPLPPLHPHPHAHSNKASANKSQPPPPWRTYSWSDLHSVVAEVHEISGLAICSGNDGNKVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 26 | 72 | 47 | - | – | |
| PANTHER | 29 | 220 | 192 | 7.9E-61 | – | |
| PANTHER | 29 | 220 | 192 | 7.9E-61 | – | |
| MobiDBLite | 163 | 210 | 48 | - | – | |
| MobiDBLite | 194 | 208 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0324800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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