Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0326600 |
| Transcript ID | LotjaGi4g1v0326600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|A7TQN2|SQS1_VANPO Protein SQS1; TrEMBL-Plants: tr|A0A0B2R7K0|A0A0B2R7K0_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0326600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70491501..70494694) extracted from Lotus japonicus Gifu genome v1.2.
GAGCTGAATCCATTGCTGGTCTCCTCTCCCTCTCCGCCGCCAGCATCGCCGCCAGCTCCGCCGCGTGGAAGCCATCGCCG GCGAGGAGCTTCTGGAATTTCCAACTCGCGTTTTAGCGCGATTCAAGGTCGGTTTTTCATCCCTATACCTCCTAAACTCA TAATCTAAGCTCCCTAACCACTAATTACACCTCAAATCAACATGAATTCACCAAATTTGAATCAAACTTTTCAAGAAACT TGAACTCTTCGAATCTGCCATTATAGAGCACTTCAGGACCTCAAACATGTTGCAATAGATTCCTTATACATCATGGAACA TAACCCAATACCTTTGGTAGCTCGAATCAACCTCAAACTTGATCTTCAAATTTCAAGTTTTGGAGTTTTTGAACTTTTTC AAAGGAAGTACCATTTATACTAATCACTTGGACTTTAAACTTTTAATGTATTATCATGATGCTGTGAGATAAGTTCTGGC AAAGTTTGAGAATTTTTGGAGCACTAGATTAATTACTACAATTTTTTCATGATAACTGGACTTTTAATTGGTTAGAAAAT ATGGAATATGTTATAAAATTTGTTAGAGCCTGATTTAGGACATGATAATTACATAGAGCTTCAGTATAGGTCTAATATCA TCCCTGGAATTTTTATAAATTATTTCACCAATTTTAGTAATTTATGTGATTTTTAGTTAATTAAATAAGTAATATATGTT TTAAAATGTTTAAAAATAGAATAATATTGTAAAATAAATTTTCCAGTGATCAAGTATGTTCATATAGTTTATGTAGGTGT TCTTAAATTTTCCAGAGACTTAACTCACTGAGTTAGTAATTTTAAGTATTTTTAGTATAATAATAGACTTTTTAGGATTA TTTAATGGTTTAAAAATAGTTTAATAGTTTCAGAAAATCAATGAAAATTTTCCAGAGTCACAAAAGAGTTTATAAACAAG TTAGAGCACTGAAAATCATTTATTGATATTTTTATTTTAAATTAGCTATTTTTAGGTGTTTTTCTTTAAAATGGTTAATT AAGTTTTTACATTTAAAATTGGTAATACGTTTTAAAAATATTTCCAGAGGTTAGGAAATAGTTTTTATATTATAACTGAA CTTAGGAGCATAAAGATTAATAAATTTGAACTTCATAACGTTTTTATTGTTTTAATAGCTATTTTAAGTAATTTTGTATA AATTGGTTAATTTAGTAATTAGTTAAAAATGGTTAGTTGGCTTAATAATTTTTCCAGAAAGTAGAAATTTTTTTTAATGA TGTAATCTGACTTAGAAAAATTCAATTTGTCATTTTTAACATTTTTAGCATTTTTATATGTTTTTAAGTATTTATTTGCT ATTTAATTTGTTAAAAAGGACAAAACGGTAATTTCACATGTCTTAAGGGTATTTCTGGAATTTTGGGCAAACTTAAGGAC TCCAGATTAAAACCTATAATTAAGGACTAAAATAAATATTACCTTTATTAATTAATTTAAGTTTTAAAAGGATCATTATT TAATATTATGTAGTGCCGTTTGACGATTGATCCGTTTCCGATTATTCACGTGGTTAAAGGTTAGGGTAACTCCGTCATTT ACTTTCAGATAGCATGACTTTATTCATTATCTGTTCCACCTATTATTGATGGATTGATGGAGTATTATTATCTTGGTTAT CTTATTGATTATGATGAACTGAGGTTCACTTTTATCGTTGATGAATTGGAACTTTTATTGGTTATGTTGAATTGAGGTCA CTCTTATTATTGTGTGGCTAACCATATCATTTCATTAGGAGTGGCGGGTTAGTGGTCTCGACCACGCGCCGTCCCGTCCT ACGGGGCGTTACACTTCAAGCGGCGGTTTCTGTTTTCGTTCAGTTACTGTCCCACCTTTCGAGGTGCAATTGTTAATGTT ATTATTATTATCAAGCGGCAGCCGGAGACTGTCCCACATGTGCAATTTTTTTTTAAGTGGCCCCAACGGTTATCGTTCCG TTGTTACCCATCGGGGTATTATTATTATTATTGATCGATCCATTTTGTAGAGAGCATATAGACATTTAGGAAGACTAACC CTTATTTGCGATATGCTGCTTCTTTATTTAACTTGCAATCTGATTTATGTTTAATGCATGAGTTAACCCTTTCATTGTTG CTTGTCTTGTTGTTTTTGGCGTTCGTCTGCCATTAGGTGCGGATGCGGATGAACAGAAGTGATGAATTGGTTTTCTGTTA TGGCGGATTTGAATAAAGGACTTATTATTTTATTTTTTTGTTGTTGTGTAATAATTATAACTTATTCGGGATACTGGGTA TGTAATATTATTATTGTATCGTGTTAAGTTTCTCGCGAGGTTTTTGAACTTATAACTGTTCGTTTTCAGAAAGAAAAAAA AAAATTCCGTGGTTCCGTGAACCTTAGTCAATCGTTAGGTTACCTAATGCGACGTCCCAGTTACCTTAATTGGGGCGTTA CATTTAGAGACTTTAAATCTTTCAATTTGGCTTTGGTGGCAAAAAATTGGTGGCGTATTTACACGAAACCAGAGAGCCTT TTGGCGCGTATTTTCAAGGCGGTCTAGTGTGCAGGCGAGTAGCGTGTGCAGGCGGAGGTGCGTGTTGGTGCATCAGCTCC AGCTACGATTGAGAGAAATGTGGCTTGGCGTGGACCTGCTCGTGGCACTTATAAGTGCAATTTTGATGCTTCATTTGTCG ATGGGGGAGTAGCCGGCTTGGGTATGGTGGTTCGTAATCACAGAGGTGAGGTGATGGCCTCCGCGTGCTCCTATCCAGTT TATGTTACCACTTCTCTCCTGGCTGAAGCAATGGCCATGAGGTGGTCCTTACAGCTTGCTATTGATTTGGGTTTCCGACG GATTTCTCTGGAGACAGATTGCCTGCAGTTGTTTAACCACTGGCATGCAAAGGAGGATGGTCGGTCGTATTTGAGTTCCA TTATTAATGATTGTCGTTTATTGAGTCATGCTTTTGATTTAGTTTCTGTTATGTTTGTTCGCCGTACGGGCAATACTGTT GCGGATTTTTTGGCTAAGAACTCGGAAGCTTATACCGATACGGTATGGGTGGAAGAGGTTCCTTTAGCCGCCGCACCGCT TATTGATGCCGATGTAATGAACCTTTTGCCGACTGGCCTTTAATATATCTGCAGTTGAATTTCAAAAAAAAAAA
CDS sequence (LotjaGi4g1v0326600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTTCGTAATCACAGAGGTGAGGTGATGGCCTCCGCGTGCTCCTATCCAGTTTATGTTACCACTTCTCTCCTGGC TGAAGCAATGGCCATGAGGTGGTCCTTACAGCTTGCTATTGATTTGGGTTTCCGACGGATTTCTCTGGAGACAGATTGCC TGCAGTTGTTTAACCACTGGCATGCAAAGGAGGATGGTCGGTCGTATTTGAGTTCCATTATTAATGATTGTCGTTTATTG AGTCATGCTTTTGATTTAGTTTCTGTTATGTTTGTTCGCCGTACGGGCAATACTGTTGCGGATTTTTTGGCTAAGAACTC GGAAGCTTATACCGATACGGTATGGGTGGAAGAGGTTCCTTTAGCCGCCGCACCGCTTATTGATGCCGATGTAATGAACC TTTTGCCGACTGGCCTTTAA
Protein sequence (LotjaGi4g1v0326600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVRNHRGEVMASACSYPVYVTTSLLAEAMAMRWSLQLAIDLGFRRISLETDCLQLFNHWHAKEDGRSYLSSIINDCRLL SHAFDLVSVMFVRRTGNTVADFLAKNSEAYTDTVWVEEVPLAAAPLIDADVMNLLPTGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 108 | 108 | 6.4E-27 | – | |
| PANTHER | 1 | 108 | 108 | 6.4E-27 | – | |
| Pfam | 1 | 106 | 106 | 1.6E-23 | ||
| Gene3D | 1 | 112 | 112 | 9.5E-13 | ||
| CDD | 2 | 105 | 104 | 1.60251E-22 | – | |
| SUPERFAMILY | 2 | 106 | 105 | 2.02E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi4g1v0326600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…