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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0330700 |
| Transcript ID | LotjaGi4g1v0330700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleic acid-binding proteins superfamily; TAIR: AT3G17030.1 Nucleic acid-binding proteins superfamily; Swiss-Prot: sp|Q6NYY9|VMP1_DANRE Vacuole membrane protein 1; TrEMBL-Plants: tr|A0A151SSZ3|A0A151SSZ3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0330700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70980883..70986828) extracted from Lotus japonicus Gifu genome v1.2.
GTCGAGAATGGAGCATCACCGTTATACAGAGAGAGATTCTGCGATGGACGTAGATAATCACCGAGAAGAAGATCAAGAGA AGTCGGAGGAGGAGGATCCATTCCTCAAATTCGTGGACTACGCCAGATCCGAGCTACTGTCACTGGAAGATGATCCAACC GGAGACGGTTCTGGTGCCGGTGGATATGGTTGGAGCTGGATCGTGTCTCGTATTCTCAAAACTTGCGTTGCTTATTCAAG CGGCGTCACTCCTGCGATCTTGCTCTCTGAACTCTCTCAGGTACCGTACTTCACCTTCCCTCATCTGATTCTGCGTTTCC AGAAAATTAACCTAATATATGATTCCGATTTCCGATTCTATCTCGTTTGTACATGAACTGTGAAATGCATAGGTTAGGGA TTTAGAGACGGTTACATTCATTTCCTCTGGAATTAGATTGGTTGATGTATTAGAAGATGATTCCGATTCCATCTTCTTGT TACACAGACCGTGAAATTCAGAAATTAGAGATTCATAGTTTGTTCACTGGAATTAGATAGGTTTACTGTTCAAGTTGATG TACAGTACAGAAACCATGAAATGTTCAAATTAGGGATTAATAGTCGGTTATCTTTATCTTCTCTGGAATTATATAGGTTT TTGTAGCAGTGGACGATTTTTGTTGTTGTTGTTGAAGTGTAGCTGTTACTGTGAATCTGTGATGCGGTTTTGAGTTTTTT AGGTTTTTACTATTTTTTTCATTTTTGGCTATTTTCTCTGATTGTTGATTTTGATTTGAAGGCATGGAGTGAGCAACGCA GGGTTGGTGCTCCGAAGAAGAGGCTCGAAGTAATTAACCAACTCAAGAAGGATCATCGGAGGACAAAGCTTCCAAACACT GTTACCATTGATTCTATATGCGAGAAAAATTTCTTGTCATTGAACAGTGTTCTGGAAACTATTATTATTGATGCATTTGT ACTCCCAGGTATCTTGGAATTAAACTGTTCTTTTTTTTCTTGCTATAGTTTATTATGTTGATTGAATGTGAAGAATCGTA GCTGTTAGTGCATTTGATTTATTCTGATCCAACTGAAGGGTCATGTATCTCTTATGACTAATGAGAAATGAGAAGCCATT GCTGTGGCACCTAACCTATTAAATTATATACTAACAGGCACCAGTTATGATATTTTACCCTGTTGTAAAAAATGAATTGG TTTAGTAGAAATTAGTAAAAAACACCTCACTCTAAATTGGCTATTGAAAAAATGATTTTCTGATAGAGGAAATTGGCGTC CATTGATTCAGGTAACTTAGCCCTTGTTGGCAGGATAAGGCTTGGTGGTGTATCTGTTGCAGATATAATTTCTGTTTTGC TTTTGTGGTGATTAATGCTTGTTATCATTGGATTTTTTTTTTCCTGCAGGCACAAACATCTTCATGCTTACATTAGGGGA TTATTGGAGTTCTAATATCATAGATCTCTATCTACACCGCAGGTATATGCAGAATGCAATATTGAATCAATTAAGGTCAA AGTTAATTTTTTGCTTTGATGATCAAAAGAATAAAATATTTTTCACTATGAGAATATATTCTTTATTTGTTCTTTCAATT GGTAATCGAATCTTTTCTCAAATATACCAATAAGTTCTTTTCTTTGAATATTTGTGCAGAGTGCACGTATTGAATCATTC ATGTAGCATGTGATTTGGCCTAAAAACAAGGCATACTCTTGTTTGCAATTTCATTCAATTCATTTTCTAATAACCGAATA TTTTATCTAGCAGATACTATGACTTGGCAGGCATGCAGAATGGAGTTCTGAAGAGAGGGAGGGAGATTTTCCTTACTGGT TGCTACCTCCGAACTGCCACTGAAGGTTCTGGTCATCCACGTCTCTTGCCAACAGAGTATCTTGTGATTATTTTGGATGA GGTAACTGTCAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATAAATTGGTGTTGTTCAGATTCTATTA TTGTAGTTTCATATATAAGCAGTTCAAATTTGGAACCAAGTCTCTCCTTCGGAAGACTGGTTGTCATGACTCTTAGGTTG TAATCTGTGTGCAAGTTAATATTAACTTGTCACTTATTTAGCCTTACAAGCCTAATGATAGAACCACACTGAAAATATAT TGATGATTATATCTTTTAGATACTAAAAATCTGATAAAGTCAGATCCCTTAAGATTTGAACAATTCATTTTAATTTCACT TCCATGTCCAGAACCTGTCAAACAAAGTTTGTATCATCCATAAACAATGATTGTCATAACTTCATAAGATTTCAATAGAA TAACATCTATAATTGAGTGAACAAAATACAGCCGTCGATCATTGTGAAGCTTACCAAAAATATGAATAACTCTTGCACGG ACGAGCAAACTTCATGAACCCACTACTCATCAGCCTACAAATCTGAAGAAAAGAAATGAGATGAGTTACATAAACTTGGT GAAATAGAATAAACAAAGTCAGCATGAAGGAAAAAAGTTATGACATGAATGTTTAAAATTAGACATAGTTTATAGCATAA AGTAGAGAGAAAATTGTAAGTTCATAAGATAACTCATAATTTGTGAAATAAGATCTTAACTTTCCTGAGAATTACTTGTA AAAATGAGTTTTACAATTTCAATTATATTTCACTACCTTATCATGTCATAATTGAATATTAAATTAAGAAAAATAAGATA ATAAAATATAATTGGACATTTCTGCAAAACTATACACATTGTAGTGTATATTGAATAAATTCATAATAAAACCCTTAAAT CTTTACTTTAATACTAAAATATTTCAACCCAATAAAAATATAAACTTAAAAAAATCCTCAATTTTGGATTGTAGGGATAC TTTAGAGCACAGTAAGTAGCTTTCATTGGCTTAGCACCTTTCATCCATTAAGCACTAACTTAACTCCATGAAATCACTAC AAACTTAACTCACAAGAGTAAAGAGGATGGTTGGGGCTTTAAAGTTTCATTAAAGTCTCCAAAAGGATGCTTTAGATTGG AAGAAGATAGAGCTACAACTGGAAAAAGTAGAGAAATGGAAACTGAATAGAGGAGGGATGAAGAAGCAGCGCACAGGAAA TGAAATGAAGTGCTTCTAAATCTAATGTATGAGAAGCGTTAAAACCTGGTCTTTTTAAAAAAGAAAATTCATTTTTTTCT TTGGGTTTAATGATACTTTGTATTACTAGTTCTATCTTTTGGTCTTTATGCGGCACCTAGAACTTAGAAGGTAGATTCAG ATAGATCAAGTTTTCATGATGGCAAGCTTCTTGTTTTCTTCAAATCTGTAGAGTCAGGATGATGATGCAATGCTGCTAGC CGCTCAGTTTTGTTCAGACTCCTTCTCTTCAATTTCTCTTGATGAAGTGAACAAGGGGGCTTCTTATTCACTTTGTGCGA GGTAAACACTTTACAATTTGCATCTATGAAAATTTCATGTAACATTTTGTTGCATATCTATGTAAGCGCGTCAGAGGTTT AAATAATTTACTAGTTCATCAATGTTCCTGCTCATATGCATTCATCAACATGATTCATAATCCTGTGTAGTCGTCTTTTT TCCACTTACAAGTACGCATGTGCTCACTACTTTCTAATGTTGATTGCAGGATTGAAAGCATTGAATCTGCAGAAATTCAA GGGAGTTTTGGGAACTTACAAAGAAAACAGATTACTCTTGTTGATGGTGATGGTGTCACTTTAAAGTTTTTCTTGTGGGG TGAGCAGACTCTCCTTGCCAATCTTTTCAGGTGAATTCTTGCACTGTGTCAAATTACTGAAGCCGAGTAATTCTTTTCTT ATGTGTAACATTCATGTTTTTGTGGATGCTCAGAGTGGGATGCATGCTTGCACTGGACAAACCATACGTTACAAGTTCTG AAGAGTGTGGTATTGAAACAAGTGAGAAATTTTGTCTTGAATATGGAAGTGCAACACAGTTATATTTGGTGCCTTATATT CAACATGAAGAACAGGTGATTTTTGGATTTTTAGGTGACATGAGCTATTGTAATTGTCATTTGGAGGAAATATTAAACAA CTCTGTTGATTAGGTTTGCATAACGTTGACACCGAATCGCCATCAAGGTTCAAGGCCCATGAGTTCCTATAGTCCCAGTC AGGGTCTCAGGTTTTCTCAAGTGAGCTTGCCCCGTGATTCTCAAGGGGCCATTGATTTCAGTAATTACCCTTTTCGGGTG AGCTTATCCTCTACCACTCCTCCAAAGAAAATAAAAGGATTGATTTTTCTTATTTTCTGCACTCGTGATCTCAATAGCTA TCTCGTATGTTATTTACTTTATTTATGTTAGATATTTATTTATATTGGGATCCTGGCAATTGCTGGTGTTTTGATTATAT TGGCTTTAGCTCGTTACCCTTCTGTTTTAACTCAAATGCAACCTGTATAGACATAAAGATGCACAAGCTTGTGTGATTGC ATTTCATGCAATATCTTAACTGTCTATGAGTATATATAATTTATGCAATGAAAGCTCTTTGGGTAACAGTAGTTGGATTG CTTAATCGTAAACGAGCTTTGCTTACGTATCTTCAAGATCACACTGTTATCAGTACCTCAATCATACATTTACAAATTCA ACATAATGCATAAATTAGTCAACATGGAAATCTTCATCCCATGCTAATAAGTTGTTTCGTAGAGGGGTCTGCTGCTTAAG CAGTGCCAATCATATGGCTGTATATGAGTATATTGATGTTTTTCACACTATCCTGCGTTCCCTCCTTAATAGTGCTTATC TTCTGTCTCTAATGGTTGATTTGTTAACGTTGTTACTTGTGTAAAGTTTTGCAGTCATTTGTGGTCGACCTTCGCAACAA GATGACTAGGATCTGCCTCTATGGTGTAGTTACAGATATTATCAAAGAGGATAATATCCAAGAAACTGTTTTTTATTTAA GAATCACGGATACTAGCGGAGAAATTTGGGCAAAGCTTCATTTTGCCAGATTTTGGTAATGATTACAATTAATACTAGAA TTACTTTCTAGCAGCATTCTTAAGCAGTATTGGGTAGACAGATGCAGAATGGAGTAGGTCTAGGATTGAAAATTCAAAAG ATAAAAAGTGAGATGGAAGGAAGAAGAGATAGTAAGAAGAAGCCTTGGTGACGGAGGGGATTGGAAATAATTACTATCAG TGTTAAGAAACAATGTAACATGTTTCCTGTTTTATCCTCCCCGTTCTTATGCTTTTATAATGTATGACAGGTCGTTGGGA AGAGTGAGTCTTGGACACACTGTATTCATATCTGGCTTGACATGTACCATGTCTAAGAAACAGAAGCGGTGAGCACATCC AACTTGAATGTTTAGAACTAATGCACATCAGACATAAGGAAAAATATAATGTGAAAATTTACATTTTAAAATAATGTTGG TCTTTAAATACTATTTTTATTCTTCAAAATCTTGTATCGTACCCCTAGCTGTTCATGGCGTCTGCTCAATCGGTTTTCTT TTCTCTGCCTTTATTCTATGCACATAATCTTACTGTTCAGCAATGTTTTTGACAGTTTGGAAGTATCATGGTTTGAGAAT AGTATTGGGACTTCATTCATCAATATCAGCTGCTTACCAGCATTGATCAATTCATCTTGCCTTCACAAGCTATCGCAACT CGCTGATATTTCTAACCAGGCTAGCTATGCGCAGGTAAGAGTTATGTTTTGGTATTACTTAAATATCTATTTCTTTATTT GTTTCAATTATTATGTTGTACACTAGCTGATATCTTCAATATGGACCAAACACTACAATGTTGTGCACATGTCCAAAATG TTGCACCCTTGGAGTACTCCTCATAGCTCTGAAGCCAATATATTTATCTACAAAATCTGAATTTCTCTTCCTTGATGTTG TTTTAGGTCTGTCGGGTCTGGCTTGA
CDS sequence (LotjaGi4g1v0330700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCATCACCGTTATACAGAGAGAGATTCTGCGATGGACGTAGATAATCACCGAGAAGAAGATCAAGAGAAGTCGGA GGAGGAGGATCCATTCCTCAAATTCGTGGACTACGCCAGATCCGAGCTACTGTCACTGGAAGATGATCCAACCGGAGACG GTTCTGGTGCCGGTGGATATGGTTGGAGCTGGATCGTGTCTCGTATTCTCAAAACTTGCGTTGCTTATTCAAGCGGCGTC ACTCCTGCGATCTTGCTCTCTGAACTCTCTCAGGCATGGAGTGAGCAACGCAGGGTTGGTGCTCCGAAGAAGAGGCTCGA AGTAATTAACCAACTCAAGAAGGATCATCGGAGGACAAAGCTTCCAAACACTGTTACCATTGATTCTATATGCGAGAAAA ATTTCTTGTCATTGAACAGTGTTCTGGAAACTATTATTATTGATGCATTTGTACTCCCAGGCACAAACATCTTCATGCTT ACATTAGGGGATTATTGGAGTTCTAATATCATAGATCTCTATCTACACCGCAGATACTATGACTTGGCAGGCATGCAGAA TGGAGTTCTGAAGAGAGGGAGGGAGATTTTCCTTACTGGTTGCTACCTCCGAACTGCCACTGAAGGTTCTGGTCATCCAC GTCTCTTGCCAACAGAGTATCTTGTGATTATTTTGGATGAGAGTCAGGATGATGATGCAATGCTGCTAGCCGCTCAGTTT TGTTCAGACTCCTTCTCTTCAATTTCTCTTGATGAAGTGAACAAGGGGGCTTCTTATTCACTTTGTGCGAGGATTGAAAG CATTGAATCTGCAGAAATTCAAGGGAGTTTTGGGAACTTACAAAGAAAACAGATTACTCTTGTTGATGGTGATGGTGTCA CTTTAAAGTTTTTCTTGTGGGGTGAGCAGACTCTCCTTGCCAATCTTTTCAGAGTGGGATGCATGCTTGCACTGGACAAA CCATACGTTACAAGTTCTGAAGAGTGTGGTATTGAAACAAGTGAGAAATTTTGTCTTGAATATGGAAGTGCAACACAGTT ATATTTGGTGCCTTATATTCAACATGAAGAACAGGTTTGCATAACGTTGACACCGAATCGCCATCAAGGTTCAAGGCCCA TGAGTTCCTATAGTCCCAGTCAGGGTCTCAGGTTTTCTCAAGTGAGCTTGCCCCGTGATTCTCAAGGGGCCATTGATTTC AGTAATTACCCTTTTCGGTCATTTGTGGTCGACCTTCGCAACAAGATGACTAGGATCTGCCTCTATGGTGTAGTTACAGA TATTATCAAAGAGGATAATATCCAAGAAACTGTTTTTTATTTAAGAATCACGGATACTAGCGGAGAAATTTGGGCAAAGC TTCATTTTGCCAGATTTTGGTAA
Protein sequence (LotjaGi4g1v0330700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEHHRYTERDSAMDVDNHREEDQEKSEEEDPFLKFVDYARSELLSLEDDPTGDGSGAGGYGWSWIVSRILKTCVAYSSGV TPAILLSELSQAWSEQRRVGAPKKRLEVINQLKKDHRRTKLPNTVTIDSICEKNFLSLNSVLETIIIDAFVLPGTNIFML TLGDYWSSNIIDLYLHRRYYDLAGMQNGVLKRGREIFLTGCYLRTATEGSGHPRLLPTEYLVIILDESQDDDAMLLAAQF CSDSFSSISLDEVNKGASYSLCARIESIESAEIQGSFGNLQRKQITLVDGDGVTLKFFLWGEQTLLANLFRVGCMLALDK PYVTSSEECGIETSEKFCLEYGSATQLYLVPYIQHEEQVCITLTPNRHQGSRPMSSYSPSQGLRFSQVSLPRDSQGAIDF SNYPFRSFVVDLRNKMTRICLYGVVTDIIKEDNIQETVFYLRITDTSGEIWAKLHFARFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 26 | 460 | 435 | 3.1E-204 | – | |
| Pfam | 32 | 156 | 125 | 1.7E-42 | ||
| Pfam | 161 | 290 | 130 | 9.4E-40 | ||
| Pfam | 411 | 457 | 47 | 3.7E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0330700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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