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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0336600 |
| Transcript ID | LotjaGi4g1v0336600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | OTU-like cysteine protease; TAIR: AT1G62320.1 ERD (early-responsive to dehydration stress) family protein; Swiss-Prot: sp|Q87Q40|ASTE_VIBPA Succinylglutamate desuccinylase; TrEMBL-Plants: tr|A0A0B2SJ93|A0A0B2SJ93_GLYSO Protein FAR-RED IMPAIRED RESPONSE 1; Found in the gene: LotjaGi4g1v0336600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71689697..71691345) extracted from Lotus japonicus Gifu genome v1.2.
CAGGGCTGAGGGTGCACATGCCAGTTTGAAGAAGATGTTGCGGGATTGCAAGGGTGACCTAGCCACTTCTTGGGATGCGT CGCATAGTTTGACATGTAATCGACATACTGAAATATTAGCATCGTTTGAGCGCAGTATTCACAGAATTGATCACATTTTC ATGTTCCCATTTTACACAAATATTAGAGGATTTGTGTCAAACAAATGTCTGCAGCTCATCGACGATGAACATATAAGAAT GAAGTCCTACGGCGGATGCGATTGCTTGTTGAGAGAGACTCATGGACTACCTTGTGGTTGTGAACTTGCAGGTCACCGGT CAACCACTCTCTTGTCAATTAATTCTATTTGTTATTGAAAGTGACACTTTTGTGAACTTGCAGGTTATGAAAGAATTCCA TATGAGTCAATTCATCCATTCTGGAAGAGACTGAGTTGGGAGCATGTACCTGAACCTGTTGCAGATACTATCAGCAACCA TATTTGCGGCATGAACCATGGAGATATGCAACCAGAAGTTGAGGCATTGACACATTATTTCAGTTCTTTGGATACTGGAG GGCAGAGTATGGTAAGGAGGAAGCTTCAAGCTATCTATTGTCCTGAAAGCAGTTTACTTTGTACTCCTGAGGTTCAGATA AGGTCCAAGCGCACTCTTAAGGCGAACGAAAGAAAACCACCCAAGGTTAAAGCAATAGGATCCTTGACTCGTGATCCTTC AGGTTTTGAGCATGTTGATAGGGAGATCAAAGAGGCAAAGAAGGCTTCGCAACCACCAAAGAAGAAGAAGCGTGTTAAGA AGTCTGATACAAGCTATTTCATGGGTCATTTTCCATCCTTTTTCCACCCATATATACACACAGTTCAGAATGTTGAGGAC GATGGTAACTGTGGCTATAGAGTCATTGCTGCATTACTGGGACTACCATCAGGTGAGGAAGGTTGGCCATGTGTTAGGGA AGCGTTGATAGACGAACTTGAACGACACAGAGGATTGTATGATGAAATGTGGTCCAGACATGTGGTTAATGCCTTACATT CTCGACTCACTCTTCCTCCTGGTCATCCGGCTACCGAGGATAAATGGATGCAACTGCCAGAGATGGGATACCTTGTAGCA ACCAGGTTCCAAGTGGTTTTCATATCCATCTCTTCTCAGGGTTGTTGGTCATACCTTCCACTAAGAGGAGAAGGTCCACC TCCTGTACATCGTGTTATAGCTGTTGGTCATGTGATAAATCACTTTGTACAGGTATTTTTTTATTGCGTACACTAATATC CAGTTTGTGAATTAATTTGTTGTATTTGTAAGTTATCTAATTTTATTGTTATTCTCTATAATGTAGCTCCATCTAACTCC TGGACATTCTATGCCGCCAATTGCTCTCCAGTGGGAACAGTATGTTGATCCTATATCAGTAAGCTGGTGCGTCCCATATG TTACACGTTTACACAGGTTCACATCAGAATTGGAAGCTTGGTTTGTTACTTTTGGTGTTCCTCTTAGTCACCAAAGCTAT GTAGACATCACCACAGACTGACACCACACTTTGTGTAATATTCATTTGTAAACGCTCTGTAATATTAATCTGATGGGCCT TGCCCTTATGTTGTTCATTGCTGCTTTTAATAATAGTAATTTGATGGTC
CDS sequence (LotjaGi4g1v0336600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCGGGATTGCAAGGGTGACCTAGCCACTTCTTGGGATGCGTCGCATAGTTTGACATGTAATCGACATACTGAAAT ATTAGCATCGTTTGAGCGCAGTATTCACAGAATTGATCACATTTTCATGTTCCCATTTTACACAAATATTAGAGGATTTG TGTCAAACAAATGTCTGCAGCTCATCGACGATGAACATATAAGAATGAAGTCCTACGGCGGATGCGATTGCTTGTTGAGA GAGACTCATGGACTACCTTGTGGTTGTGAACTTGCAGGTTATGAAAGAATTCCATATGAGTCAATTCATCCATTCTGGAA GAGACTGAGTTGGGAGCATGTACCTGAACCTGTTGCAGATACTATCAGCAACCATATTTGCGGCATGAACCATGGAGATA TGCAACCAGAAGTTGAGGCATTGACACATTATTTCAGTTCTTTGGATACTGGAGGGCAGAGTATGGTAAGGAGGAAGCTT CAAGCTATCTATTGTCCTGAAAGCAGTTTACTTTGTACTCCTGAGGTTCAGATAAGGTCCAAGCGCACTCTTAAGGCGAA CGAAAGAAAACCACCCAAGGTTAAAGCAATAGGATCCTTGACTCGTGATCCTTCAGGTTTTGAGCATGTTGATAGGGAGA TCAAAGAGGCAAAGAAGGCTTCGCAACCACCAAAGAAGAAGAAGCGTGTTAAGAAGTCTGATACAAGCTATTTCATGGGT CATTTTCCATCCTTTTTCCACCCATATATACACACAGTTCAGAATGTTGAGGACGATGGTAACTGTGGCTATAGAGTCAT TGCTGCATTACTGGGACTACCATCAGGTGAGGAAGGTTGGCCATGTGTTAGGGAAGCGTTGATAGACGAACTTGAACGAC ACAGAGGATTGTATGATGAAATGTGGTCCAGACATGTGGTTAATGCCTTACATTCTCGACTCACTCTTCCTCCTGGTCAT CCGGCTACCGAGGATAAATGGATGCAACTGCCAGAGATGGGATACCTTGTAGCAACCAGGTTCCAAGTGGTTTTCATATC CATCTCTTCTCAGGGTTGTTGGTCATACCTTCCACTAAGAGGAGAAGGTCCACCTCCTGTACATCGTGTTATAGCTGTTG GTCATGTGATAAATCACTTTGTACAGGTATTTTTTTATTGCGTACACTAA
Protein sequence (LotjaGi4g1v0336600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRDCKGDLATSWDASHSLTCNRHTEILASFERSIHRIDHIFMFPFYTNIRGFVSNKCLQLIDDEHIRMKSYGGCDCLLR ETHGLPCGCELAGYERIPYESIHPFWKRLSWEHVPEPVADTISNHICGMNHGDMQPEVEALTHYFSSLDTGGQSMVRRKL QAIYCPESSLLCTPEVQIRSKRTLKANERKPPKVKAIGSLTRDPSGFEHVDREIKEAKKASQPPKKKKRVKKSDTSYFMG HFPSFFHPYIHTVQNVEDDGNCGYRVIAALLGLPSGEEGWPCVREALIDELERHRGLYDEMWSRHVVNALHSRLTLPPGH PATEDKWMQLPEMGYLVATRFQVVFISISSQGCWSYLPLRGEGPPPVHRVIAVGHVINHFVQVFFYCVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 251 | 386 | 136 | 9.188 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0336600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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