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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0342400 |
| Transcript ID | LotjaGi4g1v0342400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-dependent lipid-binding (CaLB domain) family protein; TAIR: AT1G09070.1 soybean gene regulated by cold-2; Swiss-Prot: sp|O04133|SRC2_SOYBN Protein SRC2; TrEMBL-Plants: tr|A0A0L9TTN4|A0A0L9TTN4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0342400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72206179..72207291) extracted from Lotus japonicus Gifu genome v1.2.
CGTAAAACTCACACTATTTCCTCACAACACAAAACAACTTTGAATTCGACAACAACAACAACAGCATGGAGTCCAGAACC TTAGAACTCAACATTGCATCAGCGAAGGATCTTAAAGATGTCAACCTCATCGGCAAGATGGATGTCTACGCCGTCGTTTC ACTCTCCGGCGACACCCACTGCCACTACAAGATCAAAACCCAAGTCCACCGAGACGCCGGCACCAACCCCACCTGGAACT TCCCCATCACCTTCACAATCAACGAAACCCATGCCCGCCAGAATCGGTTGATCCTCGAAATCAAGCTCCTCTGCCAGCGC ACCCTCGCCGCCGACAAGGAAATCGGTGACCTCATTGTTCCCGTCAGGGAGCTGATCGACCAGCCCGGCGACGGGAAGTC CTTCCAGCATGTTAGTTACCAGGTCAGACGACCGTCAGGGAAACCCAAAGGAGCGTTTAATTTCTCCTACAAATTTGGCG GGAAATTCGCTACTCCGGCGAATCATGTGCCGGAGCCGGTCATGGCTTATCCTCCTCCGGTGGCGGGGTCGTCCGGTTCT GCGCCGTACCCTGGTGGTTATCCTCCATCAGCGCCGCTATATAGCGGCGGATACACTTACCAGCCGTCGGCGCCGGTGTA TGATGGGTACCCGGGTCAAGGTGGGTACGAGTACGGTCAGCCGCCGCCGGTTCAGAAACCGGCGATTGGGAACAAGTTTG GAATGAGAATGGGATTGGGAGCCGGATTGCTTGGTGGAGCTATCGGTGGGATGCTGATTGGGGGGATGATGTCTGATGCT GGCGGTTGTGGTGCCGGCTACGACGGTGGTTTCGGTGATGCTGGTGGCGGTTTTTGATTTTTAAGTTTCATTTTTCTGTT TTGTTTTTAGGTTTCTATGATAGATAGGATAGTTTGTTCTTCTGTTTTGTGTAAAACGTGGAATTTACTTTTCTGTTTAT GATAATTTTGTGGAGTATGATTAGGAGCTTATTGTTATTATTATTGATTTTGTTCTGTAAATTAGAGTGTTTCACAAATT TAATCTCTATGGCACTTTCTCCATGGGGATTTTATTGATATGTATAGAGCTGTTCAAAAAACCACTATCAATC
CDS sequence (LotjaGi4g1v0342400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCCAGAACCTTAGAACTCAACATTGCATCAGCGAAGGATCTTAAAGATGTCAACCTCATCGGCAAGATGGATGT CTACGCCGTCGTTTCACTCTCCGGCGACACCCACTGCCACTACAAGATCAAAACCCAAGTCCACCGAGACGCCGGCACCA ACCCCACCTGGAACTTCCCCATCACCTTCACAATCAACGAAACCCATGCCCGCCAGAATCGGTTGATCCTCGAAATCAAG CTCCTCTGCCAGCGCACCCTCGCCGCCGACAAGGAAATCGGTGACCTCATTGTTCCCGTCAGGGAGCTGATCGACCAGCC CGGCGACGGGAAGTCCTTCCAGCATGTTAGTTACCAGGTCAGACGACCGTCAGGGAAACCCAAAGGAGCGTTTAATTTCT CCTACAAATTTGGCGGGAAATTCGCTACTCCGGCGAATCATGTGCCGGAGCCGGTCATGGCTTATCCTCCTCCGGTGGCG GGGTCGTCCGGTTCTGCGCCGTACCCTGGTGGTTATCCTCCATCAGCGCCGCTATATAGCGGCGGATACACTTACCAGCC GTCGGCGCCGGTGTATGATGGGTACCCGGGTCAAGGTGGGTACGAGTACGGTCAGCCGCCGCCGGTTCAGAAACCGGCGA TTGGGAACAAGTTTGGAATGAGAATGGGATTGGGAGCCGGATTGCTTGGTGGAGCTATCGGTGGGATGCTGATTGGGGGG ATGATGTCTGATGCTGGCGGTTGTGGTGCCGGCTACGACGGTGGTTTCGGTGATGCTGGTGGCGGTTTTTGA
Protein sequence (LotjaGi4g1v0342400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESRTLELNIASAKDLKDVNLIGKMDVYAVVSLSGDTHCHYKIKTQVHRDAGTNPTWNFPITFTINETHARQNRLILEIK LLCQRTLAADKEIGDLIVPVRELIDQPGDGKSFQHVSYQVRRPSGKPKGAFNFSYKFGGKFATPANHVPEPVMAYPPPVA GSSGSAPYPGGYPPSAPLYSGGYTYQPSAPVYDGYPGQGGYEYGQPPPVQKPAIGNKFGMRMGLGAGLLGGAIGGMLIGG MMSDAGGCGAGYDGGFGDAGGGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 253 | 253 | 5.0E-71 | – | |
| PANTHER | 1 | 253 | 253 | 5.0E-71 | – | |
| ProSiteProfiles | 1 | 97 | 97 | 9.731 | ||
| Gene3D | 1 | 147 | 147 | 4.2E-17 | ||
| SUPERFAMILY | 3 | 138 | 136 | 8.78E-21 | – | |
| CDD | 5 | 133 | 129 | 5.37578E-56 | – | |
| Pfam | 5 | 108 | 104 | 1.0E-12 | ||
| SMART | 5 | 112 | 108 | 1.4E-10 | ||
| TMHMM | 223 | 242 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0342400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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