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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0347700 |
| Transcript ID | LotjaGi4g1v0347700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein; TAIR: AT5G18810.1 SC35-like splicing factor 28; Swiss-Prot: sp|Q1PDV2|SRC28_ARATH Serine/arginine-rich SC35-like splicing factor SCL28; TrEMBL-Plants: tr|A0A1J7IWC0|A0A1J7IWC0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0347700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72663647..72668197) extracted from Lotus japonicus Gifu genome v1.2.
CACAAATGCGATCAAACACTTCCTGGAGTGTGTATATAATAAATAATCCTTTATCCTATATATTATTTGCCTCTCTATGA ATTAGCGCTCTATTCCATTCGACTCTGTTCTGTTCTGTTCTGTTGTGAGGATTAGGGTTTTGAATTTTTCCACTCAAACT CTAGGGTTTCTCCAAGGTGTGCAATGGGGAGGTACCGTAGCCGGAGCAGAAGCTACAGCCCTCGCCGACGCAGCAGAACC CCTCCACCGCGCGGACGCAAGCGCTACGACGATGATCGCACCCGCTCATACAGAGACCGCCGTTCACCTCTTCCTTCTGG ACTCCTTGTTCGCAATCTCCCCCTCGATGCTAGGTATACGCATTTTTCGTTCTATACTGTTTCTTTCCATACAAGCTTTA CTCCCTAAACCATCAATGTCAATGTTAGAAAACTGTTTTGGAAATTAGGTTTGTGACTGCTTGGTTGATGTTTCTGTTTC ATTGCACTTTGATCTATCCAGTTAACATAGCTGATTTTTGTTTTCCATTTATACTATGCAGGCCTGAAGATCTCAGGGGG CCATTTGAGCGATACGGTCCTGTGAAGGATGTTTATCTTCCTAAAAATTACTACACTGGGTATCTGCATTCTACACTTTT TTTTTGAATTATCAATTTTAATGTAAATTGCTTCTACTGTTATCGTATTGCACAATTTCTCTATGAAGTATCTGTCAAGG TTTAATGTTTGCTCATTAGTTAGTATTACAATGCTTTCTTGAGGTTCGAGCATTTTGTGTTCACGACATTGAGAATTTGT TGTTGAATTGCTTTTGTAGTGAGCCAAGGGGCTTTGGATTTGTGAAGTATCGTTTTGGCGAAGATGCAGCAGAGGCTAAG CATCATCTTAATCACACTATCATTGGTGGGCGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACACCTCAAGA GATGCGTGTTACTTCTCGTCCAAGGTGTGTGATTACTGTCTGTTTTGCTAATTATTTTTCAATTTTGCAATGAGGGATAA GTGCTGTCTTCTTACATGGATATTGACTTCTGTTTCTGTGCGTGTTTATGATGTTTTTGTTTATTAACTTTTGTAGCAGT CGACATGGAGGTGGTAGAAGGAGGACTGGAACAAGATCACCCCCAAGACGCCGATATCATTGTCAGTTCAATATTCACTT CAGCTTCAAAACTAATTTCTAATGAAATGATGTCCTATTATTTGAAAAACCATTTCTTGTTTCTTATGTTACTGTGCCTT TTCTTTTGCAGCCTACTCTAGGTCTCCATCACCAGCCAGGGATGATTCAAGGTTTGAGCTTCATAGTTTATTTTTTCAGT GTGCAATTTTCTACTTTTTAGTATTGTCATATTTATTGGGTGGTATGTGTGAATCATAGTCGTAAATAGAATAGACCGCT TGTGTTTTTGAGTTGTGATTGCGGCCACTCTTTGCGCCTAACGAGTGTGACTGCAAGAGTTTCCAAAAGGCCTCTCTGGC CTCTTTTATGCTTGTCACAAATTGATCTTTAGGAGAATGATAGGGTCTCTCTTTCAAAAGGAAGTTTGCGTAACCCTTTT TCTTGGTCACAAATACATTCAAGCAAATAGTTTTTGTTTAAACTTCATAGCCTCCTTCCTGCCAAGCAGACTGTTCTCTG GCGTTTGTTCCAGACAAGTCTGAGAGTCTCTGGCCAAGTCTGATGGTTTCTTGCATCATTCTGGCAGCTGTTATTTACAT GCTCTGTTTCTTTATTTCTGCTAGTCTGCTGTTTTCACTTTATTCTCGTTTGACTTTATACAGTCTCTGCTCGTCACATA CTCAATTACAGATGTTTATTCATTGGTTTTCTTGTTCAAACTCAATCATTTTTTGGGTGTTGAGAGTCTTGGTTGCTGCT TTGAAGGGCTCTGTTTTGAACTTCTTAATAAACAGCTTCTTTTTTCCTTGAGCTTGAAGCCCATAACTTTATATTATTAA TTATGAGCGTCTTGAATTCTGATCAACTTATTCTCACTTTCTGAACATTTATGTGTATAGCATAAATTACATAAACCTAT ATCTAAAATTTCAGTATTGCAGTTTGTGGGGTTGACTGCTACATGTTGCAATCCATGATTGATAAATGGTAACATAGGTT TGCGCTAAAGATTAACTTCAATAATGACGGTTGGGTACCTATCTTTTTATTTAGGTGCTGAGATGTTTATGAATGGATTT CAGAAAATAATGTCATTTTCTAAGAATCCAAGTAGGAAGTGTTTTCGTTTGGAGTATTTCATATGGCCAACTGCTTTGTA CAGGTGGACTATAAGTGGCGAGCTGATTTATATAATGAAATATCAATGTTGATAGATTTATATGTTCTTGGGAAGAGTAT AATTTGCTGGTTTGCTTCGCTTACAATTAGAGTGGCTTCCAATCCTTTGGCGTTGACAGCACTCCTATGATGTGTTCAAA TGAATTGGATGATATCTGCTTCTGGTCTTCTTTATGCAGATAATAAAGTGAATTGGAAGACTTTAAAGATGGATTAATAA AGATTAACGAGTAAAGAGGGCTTAAAGTGATGTGCTTCTTGCTTACGTTTCTATCAAAGACACTCCATAAGAAATGCCCA TATCAAATTTGCCTTATTCTGCCAGTTGCCTGGACTTTCCGTACTTTGCTTACATTTGGTTTGTGGCTGAATAATGGTTC AAATAAGTTCTTATTTTGATTCCCTCGTATAAGATTTCTATGAGAAAGATTTATTTAGTTTGATATCTTGTTTTGCATAT ACTATCCAGTTTAGAAAGAATATAAAGCTTATAGTTGGCTGTTGGCCAAAGAAAATCATCCTCAAAGAATGGAAGCCAAA GTTTATACGGGTAGAGAGATTATGATGACATTGTGCAAGAAAGATAGTTGTCGTTGTCTTTTTAAAAAAGTTGGTACAAA GAGCTATGAAGTTCCCAGATGCTGATCATGCAGTACATCATTCATAACTGTCAGTGTTTGGATCCAAGTGTCATGTATTT GTCCAGAAACTTTGGGAAGGTACAGGTAAAAAGTCATATTTTGGCTAATTAGATTTTAAAAGGATGTAAGTATTAGTTCT CACACAATACAAAAAGTGTAATTTCGTTTTGAGTGGTTGTGTGCTTAATGATCTGTTTAGTGTGTTGTAGACTTGTAGTT GTATCTATTCAGATCTTCAGTGATTTATTGGATGCTCCTGGTTGGTGTTCTGATATGTATTATATATTATATATAGGATA GGATATGTAATATTTATTGTGTCAATTTAGCCTTTCTCACCCTGATGTGTTGATGTATATATATATGGATGGCAGGGGTA GGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCGCTCTCCTAGTGGCGGAAAGGACTACAGAAGG TCCCCTCATCCCAGGGAGAATGGTCGGAGTCCTAATGACAAGAGGGATCAGGCACCTAGCAGATCTCTGAGTCCCAGACG TGATGATCCTCCTAATGAAAAGAGGGATCGGGCACCTAACAGATCTGTGAGTCCTAGACGCGATGATCGCAGTCCTTCAA GGTCCCGTTCGCGGTCATACAGGTATATTTTCACTGTTTTTATTGAATCCCTACTGTGCCTAATTTTTTTCTCTTCAAAT ATGATTGTTAATGATGCTGTTGAAATTCTCAAATTATAGTATGGTAAATAGTCCAACAGTTGTACAAATGAGGCTCAATT GAGCTTGTCTCTAAGATCAGCAAGTTAGAATTTATGTGATTTCAATTCATTTTCAAGCGTTTGCCCCTGAAATTTGATGG TGGATATACCCTTGGTTGCCTACTGGCTTTAGATGAGATTTACGGACTAAATTTGTAACTAGAGACCAAGCGACTTGTTA AGCTAAAGTTTACTGTTAGTATATTAGTAATTACTGTCTTGTATCAGTCTTTGCACATCAGAAGTCATTAGGAATTCATG TGGGTTGTGACATTGTAGTTTTTTATTTTCTGCATAAGTTTATTTTGTTATAATGCCTTGAAATTCCTATATTATTTTAT TGAAAACCAAATGGTTAGTTTCACCATGATATTTACTCTTTGACAGGGATTTGCATTTGAAGTGTATTGAAATTGAATAG ACAATCATCGGTTGATTAATTCTTTCTCTTTTTGCAGTCCACGCTGATCTGCCATCAAACTTGTGATTTCGTGGTGGTCA CCGGTCAATTTGGGCTTTTCTGTGGTCACATGCTGCAGAATGCAGATAAACTTTTACATTTTGAAACGCGCTGATGTCGC GAAGTAAAATCTATGATGTTAATATTAGTATTTAGGAGACAATTTCATTAGAAGGTTGCTTCACTTGGTGTTTTGTCATT TTTGTGCTACGTAAGGCCAGTTTCATCAGTTTTCTGAAAACTAAACTGTTCATGAGTTGTTTCTTCGTTTACTTCAAAAT ATATTTTGACTTATCTATAGAAACTTCGAAGTTTGGATAACATCCATATTAATTACTGCGGTAATGTTTAC
CDS sequence (LotjaGi4g1v0347700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGGTACCGTAGCCGGAGCAGAAGCTACAGCCCTCGCCGACGCAGCAGAACCCCTCCACCGCGCGGACGCAAGCG CTACGACGATGATCGCACCCGCTCATACAGAGACCGCCGTTCACCTCTTCCTTCTGGACTCCTTGTTCGCAATCTCCCCC TCGATGCTAGGCCTGAAGATCTCAGGGGGCCATTTGAGCGATACGGTCCTGTGAAGGATGTTTATCTTCCTAAAAATTAC TACACTGGTGAGCCAAGGGGCTTTGGATTTGTGAAGTATCGTTTTGGCGAAGATGCAGCAGAGGCTAAGCATCATCTTAA TCACACTATCATTGGTGGGCGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACACCTCAAGAGATGCGTGTTA CTTCTCGTCCAAGTCGACATGGAGGTGGTAGAAGGAGGACTGGAACAAGATCACCCCCAAGACGCCGATATCATTCCTAC TCTAGGTCTCCATCACCAGCCAGGGATGATTCAAGGGGTAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTC TAGGTCTCGCTCTCCTAGTGGCGGAAAGGACTACAGAAGGTCCCCTCATCCCAGGGAGAATGGTCGGAGTCCTAATGACA AGAGGGATCAGGCACCTAGCAGATCTCTGAGTCCCAGACGTGATGATCCTCCTAATGAAAAGAGGGATCGGGCACCTAAC AGATCTGTGAGTCCTAGACGCGATGATCGCAGTCCTTCAAGGTCCCGTTCGCGGTCATACAGTCCACGCTGA
Protein sequence (LotjaGi4g1v0347700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRYRSRSRSYSPRRRSRTPPPRGRKRYDDDRTRSYRDRRSPLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNY YTGEPRGFGFVKYRFGEDAAEAKHHLNHTIIGGREIRIVFAEENRKTPQEMRVTSRPSRHGGGRRRTGTRSPPRRRYHSY SRSPSPARDDSRGRDDYYSPERSRSYSRSRSPSGGKDYRRSPHPRENGRSPNDKRDQAPSRSLSPRRDDPPNEKRDRAPN RSVSPRRDDRSPSRSRSRSYSPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 44 | 44 | - | – | |
| Gene3D | 2 | 136 | 135 | 1.7E-25 | ||
| MobiDBLite | 23 | 39 | 17 | - | – | |
| PANTHER | 29 | 196 | 168 | 1.0E-54 | – | |
| PANTHER | 29 | 196 | 168 | 1.0E-54 | – | |
| ProSiteProfiles | 45 | 123 | 79 | 16.995 | ||
| SMART | 46 | 119 | 74 | 3.0E-18 | ||
| Pfam | 47 | 117 | 71 | 1.2E-17 | ||
| SUPERFAMILY | 47 | 149 | 103 | 7.12E-27 | ||
| MobiDBLite | 122 | 263 | 142 | - | – | |
| MobiDBLite | 138 | 157 | 20 | - | – | |
| MobiDBLite | 162 | 183 | 22 | - | – | |
| MobiDBLite | 193 | 256 | 64 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0347700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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