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LotjaGi4g1v0348300.1

Overview

Field Value
Gene ID LotjaGi4g1v0348300
Transcript ID LotjaGi4g1v0348300.1
Lotus japonicus genome version Gifu v1.2
Description PH-response transcription factor pacC/RIM101 isoform 1; TAIR: AT4G15545.1 PH-response transcription factor; Swiss-Prot: sp|Q93W28|Y4554_ARATH Uncharacterized protein At4g15545; TrEMBL-Plants: tr|A0A0B2P5V7|A0A0B2P5V7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0348300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:72718141..72724113) extracted from Lotus japonicus Gifu genome v1.2.

GTCGTATCCAATCTCAAACCATGGCAAACCCACATGTTTTGGCACAAAATTAAGTAATACAAAGAAACTCATCATTAAAA AACAAAAAACTCTCCAGGACATGTCTCTCTGCGTTGTCTGCTTCTACACCACCAAACAAAGAACAGAATAACGCTCTCAC AGTCACATACAAAACCATAAAAAAAAAAAGGAATATAGTAATAAAAAATAATCTATTAACAAAAATAAGGAAAGAGGAGG AAAAAGTGGCAGGAAATTATCGATTAACCAACTATGGCGGCGGAATCGGGAGATTTGAACTTCGATCTTCCCGATGACCT CGTGCAAGTGCTACCGTCAGATCCCTTCGAACAACTCGACCTGGCCCGCAAGATCACATCCATTGCGCTTTCAGCACGTG TCAACGCCCTCGAATCAGAGTCGTCGGAACTTCGCGCCAGGATCGCCGAGAAGGATCACCTCATCGCCGAGCTTCAGTCG CAGTTGGACTCCCTCGACGCCACACTCTCCGCCACCGCCGATAACCTCCACCGTGCCGAACAAGATAAGGTCCGAACCAA CCCCTGAACTGAACCCGGTTCATCACTTTTCTTTGCTGGCTTTAACCAAATTTGACTCATCTCTCTCATATGAATACAGG AGAGTTTGATCAACGAGAATGCTTCACTTTCCAACACTGTTAGAAAGCTCAATCGAGATGTCTCCAAGGTTGTCATAAAC TCAATTTTGATTGTAACACGTTTTTTGTAGGCGAAATTAACTTGGTTTGATAATTTCATTTTGAATTGGGGCTACTCAGT TTTTTTTTTTAACATGGAAATGGTAGTGAAGTGAAAAATTGGAATATTTTGATGCAATGGAGCAAGGTTGTTAAATTTGA AATGTTATGGTGCAGTTGGAGGTTTTCAGAAAGACACTTATGCGATCACTTCAGGAGGAGGATGATAATTCTGTAAGTTG CTGTCAATATTACTTAATTTTTGTGCTGGTTACTGTGATTGAGAAGTTCTGTGTTGCTTAATATGTGTAAGTATGTATCA TGGAATGGTTTAACTTATTCAATGGGTTCATATCTTACTAAATTGTACTTTTTCATTTCGAAAACAATTCATAAGCTAGT ATTATGAAAAGTCGAAAACAATTCATACAAAGGTATATCTTTGTCTAACTTTTGGATTTTACTGGTGTTTGGCATAGGGA GGAGCTCCAGACATGGTTGCTAAAGTACAAAGTCAATCAAGTTTGACTTCCACGTCTCAGTTTGGAGGTACTTTCGACTT GTTGTATGTCATTTCTGTTGATTCTTGGTGCCCTATGTGAATTGCTTTTTCCCTTTTGGCTGTTTGCTTAATTTGTTTTA TTTATGCAGTGAGATTTAGAGTGTTTGGGTTTAGCTTTTATTTTGCCGTATAAGCTTTAGTGACAATTGAGCATCATCAA ATTTCTATGGGGTGCATGAAGTGCCATGTTTGGAGAGAAAACTGCTAGTTTCAATTTAATGGAGTCTACTATTTCCTCTT CAGTGGTTTACATGTCCTGCATTTGAGTTGTTTATGACTTTTTCTCTGTGAACATTAAACTGTCATGTTGCTAAAGAAAA TGAGAGGATCCAATCTATCCTCATTCCATCAGTGAAAGTAGCTTAATTGTTTTTATAAACGCTTTGGTAAATTAATCTAG TTTTGTCATTTATGTTGACGGAGAATCCCATGCACAGGCTAAGCTATTTAACTATTTTATCGAATTTGACATCAATAAGT TTATTGAATTTGATGGAGCGAGCCCTGTTAAAAACAATTTAGGTTCTATCGGGAGCAGTGTTGTTAAATAGCGGCGATAG CGGCCGCTACCCGCTATAGCGTAGCGGGAATTTGCTTCACCGCAATCGTTATGCCGCTACATAGCGGCCACCGCGATAAT CGCGATCGCGGCCGCGAACGCCATAGCGGCGTTATGCCAGAAACGGAAATAACGGATTTCATGGAATTAAAACGTTTTTC TGGCTAGTTTTTAGGGTTTTAAAAACAGCATATAATGGGCCACCTCCTATTAACGCTAATTCCCATTAATTACCCTAATT CCCATTTTCAAAAAAAAAAAACCCTAAATCCCTAATAACTATTCTCTATATTAACGCTTCAACTCTCCTCTCCTCTCTTT CAAATTCTCTCTGGTTCTCACTTCTCAGAGACTACACTCTACAGCACGGTTGCAACTTGCAAGCAAACCTTCTTAGAGTT TCTGCTTTCTGCTGAGTAGATCATACTCTTTTCCGCATCCTCTCATTCCTCTGTTTTTTGTTGAAAACCTATACTCTGTT CTTCAATGTTTCTTCTTCCTTTACCTGTTTCACAGTTTTCTTCTCTGTTTTTCAATGTTTCTTCTTCCTTTAACAGTCAT CTTCTCTTCTCTTTTTCTTTTATTTTTGTTCAAAACTCATGATCTGTTTTCCATTGTTTCTTCTTCCTTTACTAAACTTA TAATATATTGTTTCACAGTTTTCTTCTCTGTTCAAAACTCATGCTCTGTTTTCCATTGTTTCTTCTTCCTTTTCTCTTAA CTTATCTCTTACGTATTCTTATCTCTTTAAATTGTGCTCTTTTGAGACTTGCATTAACATTATGTTGTTTTAAGTACTTT TGTTATCTGTTTTGAGCTCTTGGACAGCCTTGAATTATGTTGTTTTGAGACTGAGTTAAAATTATGTTGTTTTTAACTGT TTTTTGTATAATATTGTACTTATTTTAACCGCTATGCGGTAACCGCTATTTGCCCGCGACGCGATCCGCTAAACGAAATA GCGGATTTTTGCCTCGCCGCGATTTTCCGCGATCGCGATTTGACAACACTGATCGGGAGAGGGAGAGTGGTAGAGAGATG GAGATGAACATATTTTAGTAGGCTTTCCCCTCCATATCCCTCCCTTTCCTGTTATTGCAAACAGACCCTTAAAATTGAGG TCCCTCAGCTGCGCTTTTCTCATTTTCAGTTTTGATAAGTTCTCATTTTATTGCAGATAATGAAGCTTCATTACCACCAT CCGTATCTTCTTCAGTGCCCTCAATTTCTGATACTGGAAATTCTTTTGCTGAGGATCATGAATCTGATGGTATGTACTAT CATTTATGAGGCAAATGGGTATACATACACTTCATTTTGTATTACCAAAAAAGACAGTATGGTGTCTTACATACACGACA TTCATTCACACACGCGTGCGCGCGCACATACACAGACATATTGCTGAAAAAAGTAACAACTATAATTTTCCATGTGAATC CTGACCTTCTGTGTATTTATTTTCAATTCTGAAATTGCAGCCATAAGACCTAGAGTACCATATAGTCTCCTCTTAGCATC CCAATCTACCACCCCTCGGCTCACTCCCCCTGGTTCTCCTCCCAGCCTGTCTGCATCAGTATCTCCCACAAGAACATCTA AACCTGTGTCTCCAAGGCGGCATTCAATTTCCTTTGCAACCTCAAGAGGCATGCATGATGATAGGACTTCAGTGTTTTCC TCGATGTCAAGCTCTGACTCCGGAGCAGGATCACAAACTGGTGAGTTCTTTTAACTATGTTGCCATTGCAAATGTGCAAA CAGATTTCATCTCGATATGTTTTCATTAAGTCACTCTGTTGTGAACTATTTTCTTGGATCTTGCATGCATATGAAGAATC AGATGCTTACTTAATATTTCAGTATTTCCAGCATTACAGCCATGCTGAGGTCATGACTTTTTCTCTCATTTTATTGTTTC TTACTTGGGTGTCATAGGACGAACACGGGTGGACGGAAAGGAGTTCTTTCGCCAAGTCAGGTGAGGGCCCTTGTCTTTGA AATTATGGAACCTAGTTGAGAAACTTATAGTTTTACCAAACAATGGCAACCTCAGTTGACTTAATTTAAGCACATAATTA CATAAACATGTGCCCACATGCATGTTGTAGTTTCCATAATTTTGAAGGACCTTCATGGAAACTGGATCAGATTAGACAGG AAGAAATGAATCTTTTATCACTGGATGAACTATCCTACTGCTTAGTAGTCAGGGGTCTTTATTTAATCTCCTGTTGGTTT TTATCAGGAACCGGTTGTCTTACGAGCAGTTCGGTGCATTCTTGGCTAATGTTAAGGAGCTGAATTCCCATAAACAAACA AGAGAGGTAATTCCTCATGCTCCTGCCTCGTTTCCTCTCTCATGCTTCCTCTGATCCTCTCCCACTCCTCCCCTGTTTCG TCAATTGACGCACCTATAAGCTCTGTTTGTGCGAAATTGCAGGTGACGCTGCAGAAAGCTGATGAAATTTTTGGACCAGA AAACAAGGACCTGTACAATATATTTGAGGGGTTGATTACTCGCAATGTCCATTGACATTGTGCCTAGGAGAAGCTTTATT CCGAGTTTGTATTCCACTGTATATTACATGTTTATTAGTGTGTAATAAAACATTTTTTGAACATGAAAAAGCATGTGAAT TTGAATTAATAAATGATATTTCATGATAGGGCAACAGGGTTTCCACTTTCCACTGGTTTCCTTGTATTGGTTGCAAAGCA TGGAGTAATTATTAGAAAATACAAATTATAACAAAAGATATATTATTGCTGCCGAGCAGAGAATAAGGAAATTACAAATG AGCATAACGCCATTTTCTTGTTTGTTCTTTAAAGCTGCCAACCTTAGCTGTTTGATTATGATTGCCAAGCTTGTCTGCAT ACAAATTATAATAAGCCATGGCATTTACACCTCTTAAAATTCTAACTAATTTTCCATGTCTCCCATCCACCACAATTGTT CCATCAGTGGATTCAACGCCATCAGCTAAGACTTTAATAGGCTTGACCTCAAAATTTGGATCAAGATTAGTTGAAGTATC GCCCAAGGTAACTGCACCTAGAATTTCCCCCAAGAATGTGTCCTGCATGTGCAAACAATAAGGGCTTAATTACATCTTTC TACCAATGACTCTAAAGTCAAAATCAATTATTGAAAGAAGCTTCTATGAGTAGCTTCTGAGTGCTATGAAAAAATAATTT AACCCAAACATACTATTATAAAATAACAGAAACAATATAGACAGCCTGATGAGCTTCTGCCAAATGCAATTTCTGAACAC CATCATGCTTATAAAGTTTTTATGATGTGAAAGAATATTGGCCTAGAGAAAATAAATTATTTTTGTGGATAGGAACTCAT GTACATACCATATGAAGATACTTATCATTGATTTGCTTCAAGTGGTATAGCCATGACAGCAGACCCTGGGAAAACACAGC CTCTGGAGTTTTCTTAGCCCTTTTTAAAGAATCTATGGCAGTTGAAAATGAACTTACTTTACGCTGGGCACTAAGCGGAA TCAATGTGATGTTAACTTCAGATTCGAACACTGCCTTGGCAGCCAAAGGATCTAAGAATATGTTGAATTCTGCATATTGG TTGGAAGGAACTGAAAAGATGTTTCCTTTATCATTGACATTTTCACTGATGTGTCCCCCAACTACATAAACCTCCTGCAA CATTTAGGAACAGTTATCTCCTCAAATTATAACAATCTGAACTTTATTTCTGCACTAGCAGAATGTTTAATGCAAAAAAA TCATGAATATTCAATTTATTTTTTTCTTGTATAACAAAAATGACAATAAGTTTTTCTAGCTATACTGTGGTCTCTGAAGT CCACTTTCATAGCAGTTGATTGTTATTGCTGATATATATAGCTATTTCAAATATATGCGCCATAACTGACCTTTATTCTG GATCTTATGTTTTCTACTGATACAACCTTTGCCAAATTAGTCAAGGGTCCATTAGTTAATACTGTAATCTCTGACCCTGG TTTAGTTGTTTGCCAAATAGACTCCCAAACTTCCATAGCTCGTGGTTGCCTGAGTTCAGGGTGATATGTATCTCGAGGAG CCCCGAACTTCAGAGAGTTTTCTGCTGTGTACCTGAAATAATTCCTATTGTGT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0348300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGCGGAATCGGGAGATTTGAACTTCGATCTTCCCGATGACCTCGTGCAAGTGCTACCGTCAGATCCCTTCGAACA ACTCGACCTGGCCCGCAAGATCACATCCATTGCGCTTTCAGCACGTGTCAACGCCCTCGAATCAGAGTCGTCGGAACTTC GCGCCAGGATCGCCGAGAAGGATCACCTCATCGCCGAGCTTCAGTCGCAGTTGGACTCCCTCGACGCCACACTCTCCGCC ACCGCCGATAACCTCCACCGTGCCGAACAAGATAAGGAGAGTTTGATCAACGAGAATGCTTCACTTTCCAACACTGTTAG AAAGCTCAATCGAGATGTCTCCAAGTTGGAGGTTTTCAGAAAGACACTTATGCGATCACTTCAGGAGGAGGATGATAATT CTGGAGGAGCTCCAGACATGGTTGCTAAAGTACAAAGTCAATCAAGTTTGACTTCCACGTCTCAGTTTGGAGATAATGAA GCTTCATTACCACCATCCGTATCTTCTTCAGTGCCCTCAATTTCTGATACTGGAAATTCTTTTGCTGAGGATCATGAATC TGATGCCATAAGACCTAGAGTACCATATAGTCTCCTCTTAGCATCCCAATCTACCACCCCTCGGCTCACTCCCCCTGGTT CTCCTCCCAGCCTGTCTGCATCAGTATCTCCCACAAGAACATCTAAACCTGTGTCTCCAAGGCGGCATTCAATTTCCTTT GCAACCTCAAGAGGCATGCATGATGATAGGACTTCAGTGTTTTCCTCGATGTCAAGCTCTGACTCCGGAGCAGGATCACA AACTGGACGAACACGGGTGGACGGAAAGGAGTTCTTTCGCCAAGTCAGGAACCGGTTGTCTTACGAGCAGTTCGGTGCAT TCTTGGCTAATGTTAAGGAGCTGAATTCCCATAAACAAACAAGAGAGGTGACGCTGCAGAAAGCTGATGAAATTTTTGGA CCAGAAAACAAGGACCTGTACAATATATTTGAGGGGTTGATTACTCGCAATGTCCATTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0348300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAAESGDLNFDLPDDLVQVLPSDPFEQLDLARKITSIALSARVNALESESSELRARIAEKDHLIAELQSQLDSLDATLSA TADNLHRAEQDKESLINENASLSNTVRKLNRDVSKLEVFRKTLMRSLQEEDDNSGGAPDMVAKVQSQSSLTSTSQFGDNE ASLPPSVSSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQSTTPRLTPPGSPPSLSASVSPTRTSKPVSPRRHSISF ATSRGMHDDRTSVFSSMSSSDSGAGSQTGRTRVDGKEFFRQVRNRLSYEQFGAFLANVKELNSHKQTREVTLQKADEIFG PENKDLYNIFEGLITRNVH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31218:SF224
9 338 330 9.6E-146 –
PANTHER
PTHR31218
9 338 330 9.6E-146
IPR030184
SUPERFAMILY
SSF90257
42 129 88 5.49E-5 –
Coils
Coil
50 112 63 - –
MobiDBLite
mobidb-lite
128 188 61 - –
MobiDBLite
mobidb-lite
140 180 41 - –
MobiDBLite
mobidb-lite
204 271 68 - –
MobiDBLite
mobidb-lite
219 269 51 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0022857
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0348300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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