Transcript — View — Lotus Base

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LotjaGi4g1v0349400.2

Overview

Field	Value
Gene ID	LotjaGi4g1v0349400
Transcript ID	LotjaGi4g1v0349400.2
Related isoforms 2	LotjaGi4g1v0349400.1 LotjaGi4g1v0349400.3
Lotus japonicus genome version	Gifu v1.2
Description	Glycosyltransferase; TAIR: AT2G15490.3 UDP-glycosyltransferase 73B4; Swiss-Prot: sp\|Q9AT54\|SCGT_TOBAC Scopoletin glucosyltransferase; TrEMBL-Plants: tr\|Q7XZD0\|Q7XZD0_GLYEC Glycosyltransferase; Found in the gene: LotjaGi4g1v0349400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:72836006..72838341) extracted from Lotus japonicus Gifu genome v1.2.

CACATTTTGAATATCTTACTTAAATTACCCCACTCCAAGACATTATTTTAGTACCACAAAATTTGAACTAAATTTCCAAA CTAAACTAAAGTCTGCCCTTGAGTCTTCAAAGAAAGCAACCAGTTGAAGTTGAACCCAAAAGCTCCAACTGTGTCAGTGT CTCCACCACCGTCCGCCTTCCACCGACCACCATGGATGAAGAAAATACACTGAAACTCTACTTCATTCCATACCTAGCAG CTGGTCACATGATACCTCTGTGTGACATAGCCACACTCTTCGCCTCACGTGGCCAACACGTGACCATCATCACCACTCCC TCCAACGCCCAAATCCTTCGAAAATCCATCTCCGATGCCGTCATCCACCTCCACACCGTCCAATTCCCCTCCAAACAAGT TGGCCTCCCCGACGGCGTCGAAACCATGACCGCCCTCACTAACCTCGCTGACTCCGCCAAATTCTACCAAGCCGCCATGC TCCTCCAAGGCCCAATCGGAGATTTCGTGGAGCAGAACCCACCCGACTGCATCGTTGCCGATTTCATGATGCCATGGGTT GGTGACCTCGCCAACAGGCTTCGAATCCCGAGACTCGCCTTCAACGGCTTCTCCCTCTTCACCGTCTCCGCCATGGAATC CATCAGAAAACACCGCTCCCAAACCGACCCGTTTACCATCCCGGATTTTCCTCACCATATCACCCTGCGCGCGAGACCAC CGAAATCCACCACCGGATTCATGGAATCTCTGCTGGAGAAAGAGCTCACAAGCCACGGGTTGATAGTGAACAACTTCGCC GAGCTCGACGGAGAAGAGTACATCGAGCACTACGAGAGAATCACTGGTCACAAGGCTTGGCATCTTGGCCCTGTTTCTCT GATTCGAAGAACAGAGCAAGATAAAGCAGAGAGGGGGCAGAACAGCGTGGTGAAAGTGGACGAGTTACTGAGTTGGCTCA ACTCGAAGCCACTAAACTCAGTTCTCTACATCTGCTTCGGTAGCGTGTGCCATTTTCCTGATAATCAGCTTTACGAGATT GCAAGCGCTATTGAAGCTTCAGGTTATGGATTCATATGGGTGGTTCCTGAGAAGAAGGGGAAAGAGGAAGAGAGTGAAGA AGAGAAGAGAAAATGGCTTCCGATTGGGTTTGAAAAGAAGGGGATAATTATCAGGGGGTGGGCTCCGCAGGTGGTTATAC TGGGCCACCGTGCGGTGGGTGCGTTTGTGACGCATTGTGGGTGGAACTCCACTTTGGAGGCGGTTAGCGAGGGGGTTCCG ATGATCACGTGGCCGGTGCACAGTGAGCAATTCTATAACGAGAAGCTGATTACGGAGGTGCGGGGGATTGGCGTGGAGGT GGGTGCAGAGGAGTGGAGCTCCATTGGGTTTGGGGAGAGGGAGAAGGTGGTGAGCAGGGAGAGTATAGAGAAGGCTGTGA GGAGGTTGATGGACGGTGGTGATGAAGCGGAGCAGATCAGACGGCGGGCACATGAGTATGGGAGGAAGGCTAGGCTGGCT GTTGAAGAAGGTGGCTCCTCCCACAACAATTTGACGGCTTTGATTGATGATATTAAAAGATTGAGGGCCTAAATGTGTTT ATGTGTATGCTTCTTGCCTTTTTTAATGTGTAAAATGTTTGTGACTTGCATCTTACTTTAGCTTCTTGCTGCTCATGCAT TTCTGTTAGTAGATGCAATTTGGAACTTCTCATATCAATTGTAAGGATTAGACGAGGATAGGGAACAAACCTGAGACCAT GATTTATGTGGTTCAGCCCCTAATAGTTGACCTGCATTCAGAGAGATTTTCCATATTGATTCAAAACTTCTCATACAATC ACTCACTCTCTACTTCTTCCCTCTTATAGATATGATGTCTCTCAAACTCTCGAACACTTCTCTTAACTCTTATGCACATT CACTTTGCAGTTAGCACTTGTTGGGTATTTATAGTACAACCAAAGGCAAACACAAACAAGGTTCATGAGAGGCAACAATT TCTATACTGTGAGGCAATAGCAGTCTTGTGAGGCTACAAGAGATTGCATGTGAAGCAACAGTACGTTGCTCTTGTAGTCT TGTCTTGTGAGGCAACAAATGAGCATGTGGTGCTTTAGGTTGGTATTTACATAACAACTCTCTCTACCAATCTAGAGAGT TTTATCCTGACAGAGCTTCCCATGAGGTCTCTCTACCAATATTTAATGTAGCATTCATAGGATATCAAGCCTAAAATCTA TGCTTAAATTAGAAAAATTATGTGTCAGACTGTCAGTTAATCTATACATTATTTGGTAGTATGAAACTTCACAATTGGTA GTGATTATATATAACC

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0349400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGAAGAAAATACACTGAAACTCTACTTCATTCCATACCTAGCAGCTGGTCACATGATACCTCTGTGTGACATAGC CACACTCTTCGCCTCACGTGGCCAACACGTGACCATCATCACCACTCCCTCCAACGCCCAAATCCTTCGAAAATCCATCT CCGATGCCGTCATCCACCTCCACACCGTCCAATTCCCCTCCAAACAAGTTGGCCTCCCCGACGGCGTCGAAACCATGACC GCCCTCACTAACCTCGCTGACTCCGCCAAATTCTACCAAGCCGCCATGCTCCTCCAAGGCCCAATCGGAGATTTCGTGGA GCAGAACCCACCCGACTGCATCGTTGCCGATTTCATGATGCCATGGGTTGGTGACCTCGCCAACAGGCTTCGAATCCCGA GACTCGCCTTCAACGGCTTCTCCCTCTTCACCGTCTCCGCCATGGAATCCATCAGAAAACACCGCTCCCAAACCGACCCG TTTACCATCCCGGATTTTCCTCACCATATCACCCTGCGCGCGAGACCACCGAAATCCACCACCGGATTCATGGAATCTCT GCTGGAGAAAGAGCTCACAAGCCACGGGTTGATAGTGAACAACTTCGCCGAGCTCGACGGAGAAGAGTACATCGAGCACT ACGAGAGAATCACTGGTCACAAGGCTTGGCATCTTGGCCCTGTTTCTCTGATTCGAAGAACAGAGCAAGATAAAGCAGAG AGGGGGCAGAACAGCGTGGTGAAAGTGGACGAGTTACTGAGTTGGCTCAACTCGAAGCCACTAAACTCAGTTCTCTACAT CTGCTTCGGTAGCGTGTGCCATTTTCCTGATAATCAGCTTTACGAGATTGCAAGCGCTATTGAAGCTTCAGGTTATGGAT TCATATGGGTGGTTCCTGAGAAGAAGGGGAAAGAGGAAGAGAGTGAAGAAGAGAAGAGAAAATGGCTTCCGATTGGGTTT GAAAAGAAGGGGATAATTATCAGGGGGTGGGCTCCGCAGGTGGTTATACTGGGCCACCGTGCGGTGGGTGCGTTTGTGAC GCATTGTGGGTGGAACTCCACTTTGGAGGCGGTTAGCGAGGGGGTTCCGATGATCACGTGGCCGGTGCACAGTGAGCAAT TCTATAACGAGAAGCTGATTACGGAGGTGCGGGGGATTGGCGTGGAGGTGGGTGCAGAGGAGTGGAGCTCCATTGGGTTT GGGGAGAGGGAGAAGGTGGTGAGCAGGGAGAGTATAGAGAAGGCTGTGAGGAGGTTGATGGACGGTGGTGATGAAGCGGA GCAGATCAGACGGCGGGCACATGAGTATGGGAGGAAGGCTAGGCTGGCTGTTGAAGAAGGTGGCTCCTCCCACAACAATT TGACGGCTTTGATTGATGATATTAAAAGATTGAGGGCCTAA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0349400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDEENTLKLYFIPYLAAGHMIPLCDIATLFASRGQHVTIITTPSNAQILRKSISDAVIHLHTVQFPSKQVGLPDGVETMT ALTNLADSAKFYQAAMLLQGPIGDFVEQNPPDCIVADFMMPWVGDLANRLRIPRLAFNGFSLFTVSAMESIRKHRSQTDP FTIPDFPHHITLRARPPKSTTGFMESLLEKELTSHGLIVNNFAELDGEEYIEHYERITGHKAWHLGPVSLIRRTEQDKAE RGQNSVVKVDELLSWLNSKPLNSVLYICFGSVCHFPDNQLYEIASAIEASGYGFIWVVPEKKGKEEESEEEKRKWLPIGF EKKGIIIRGWAPQVVILGHRAVGAFVTHCGWNSTLEAVSEGVPMITWPVHSEQFYNEKLITEVRGIGVEVGAEEWSSIGF GEREKVVSRESIEKAVRRLMDGGDEAEQIRRRAHEYGRKARLAVEEGGSSHNNLTALIDDIKRLRA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SUPERFAMILY	SSF53756 View details on SSF53756 Search for proteins/transripts with this domain View external data on SSF53756	5	462	458	8.64E-104	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	11	450	440	4.8E-113	–
CDD	cd03784 View details on cd03784 Search for proteins/transripts with this domain View external data on cd03784	11	453	443	2.7847E-75	–
PANTHER	PTHR11926 View details on PTHR11926 Search for proteins/transripts with this domain View external data on PTHR11926	143	379	237	6.4E-31	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	250	445	196	4.8E-113	–
Pfam	PF00201 View details on PF00201 Search for proteins/transripts with this domain View external data on PF00201	253	404	152	5.8E-23	IPR002213 Show description in modal box View details on IPR002213 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00375 View details on PS00375 Search for proteins/transripts with this domain View external data on PS00375	330	373	44	-	IPR035595 Show description in modal box View details on IPR035595 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016758 View details of GO:0016758 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring hexosyl groups	Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor).	Subterm of View details of GO:0016757

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0349400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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