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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0353100 |
| Transcript ID | LotjaGi4g1v0353100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A0R0KIY3|A0A0R0KIY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0353100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73159089..73161719) extracted from Lotus japonicus Gifu genome v1.2.
TCAGCTTCTGCTTTTCTTCTTCTCCGTCACTGAGCTGCCACCCATGGCAAACTTCACCTTCTCCTCCTCCTCCTCCTCCA ACGCTACTCTACCTCCGTTGCGCCTTCCAGCTTCATCATCTCCCGCGGCTTCGGACGATGGTTCGGGGGACACCATCAGC ATATCCATGGCGTCCAGTCCACCAATGTCTCCGACGCCGTATGACCCGCGTCCCACTTTTTTTTTTTCCCGACCCATTAC TTTAATTTGCTCTATTTTTACTTCGCTCATAGCTATTTCTGAAAAAGTTACAAACTTTGTTCAGTCATTTTTTTTCCATT GGATGAGCTTACTTGTCTGTGCTGAAGTTATTTGTTTTCATGTATTGAACTTTATATGCACTCATTCAAACTTTCTAAAT GTGCATATTTTCCTTCTAAAATCTGCATTCTTTGACATTGGTTGGTGTCTAAATGCTGGTAAGGTTAGTAACTATAATTG TATTCTTGACAGGTCCATGGAATGGTTTCTGCAAATTCAAGTCAGCTAGAAGATGACTTACAAGGGAGTGAAAACGACGA AGATCGAGTAAACAGCGATTTAGTCATAAAGAGAAAGAGGCAGAAAACTTCAGCTGTTTTGGATGATTTTGATGAAGTTG TTCAATTTCAGCCTTCCAATTCAAGTAACCCATTTGTGAGTTGTGATGGTGTTAGATACTGTAATGGAAAGATGAGGGAA ATAATTGCCACTGCTGTTATGGTTCATGAACTTCCGTTTAGTATTGTTGAGGATGAGGTTTGGATGTGGGCCTTCCAGTA TGCAAATTCAAGTTTCCAAAAGGTGACTTCAGAAACTGTTAGAAGTGATTGTTTATCAATATATGAGGCGGAGAAGAAAA AGTTGAAGACTTTGTTGACTAGTGTGAATAAGATTAGTTTAACTATAGATATGTGGAAATCAAGCCACCAAGTAGATGAA TATATGGTCATCTCAGGTCATTTCGTTGATGCAGGGTGGAAGCTTCAAAAGAGAGTGTTGAGTTGTGTGAAAGTGCCTTC TCCCAGGTGTGGAATTGATGTGGCTGGTGCAATTTTCAAGTGTTTGAAAGCTTGGAGGATTGAAAATAAAGTTTTTTCAG TATCGGTTGATAATGATACTTATAATGATTCATGCCTAGCAAATCTGAAGGAGAAGTTATCATTGAGCAGCAAGGTATTC CTCGGTGGTGCTTTGTTTCATGTCAGATCTTATTTGCACGTATTAAATTCGTTAGTGCAAGATGGCCTAAGTAAGATTGA GGATATCATTTTCAATATTCGTGAAAGTATGGAGTATATTAACTACAATGATGCAAGGTTGAAGACATTTTGTGATGTTG TTGAACAGAAGCGCTTGGGAGTTAGAAAACTTCTTATTGATTGTCCAACAAGATGGAATACCACATTTCATATGTTGACA GCTGCATTGAAATTTAAAATTGCCTTTGCAGCTTACAAAGAAAGAGAGCCCCATTATGATTATGCACCTTCACTTGAAGA TTGGGACAAGGTTGAGAAAGTTTGTACACTTCTAGAAGTGTTTAACTCTTCTACTCATGTAGTCTCAGGTTGTGAGTATC CTACTGCTAGTTTGTGTCTTGCTAAAGTTTTGAGGGTGAAACAACTAATTGATAATGCGGCTAAGGATGGAGATCTCTTC ATGAGAGAAATGGTAGCTCCAATGAAAGTAAAATTTGACAAATATTTGGGGGAATGTAGTTTGCTATTGGGTGTTGCAAG TATTTTAGATCCTAGGTGCAAATATCACATTGTTGATATATGCTTTCCCTTGATATATGAGTCTGAGGAAGTTGCCAAAG AGAATATAAAGAAGGTACGGAGTTCTTTGGAAGAATTATATGATGAGTATGTGTCTCTAAGTTTGGAGGGTTCATCCTCT GCGGAAGCAAATAATGGTGTTAACAATCCAACATCTTCCACTAAACCTAGATCTTCATTCATCACTGGATTTGACCACCT TATGAGTATTTTGCATGAAAAGGAAGTTGTTCCTCCAGTGAAATCTGAATTACAAGCTTATCTTGATGGATGCGTTTATG TCCCAGATGTTGATAATAACTCATTTAGCGTCTTGGAGTGGTGGAGGAACAACAACTCAAAATATAAAATTTTGTCAAAA TTGGCTATTGATATACTAGCTGTTCCAATATCCACCATGTCATTGGAGGATACGTTTAGTGCTAGAGGTAGAGTTATTGG TGAAATGTGTTCTAGATCGAATGAGGAATCTATTGAAGCACTTATTTGTGGCGGGGATTGGCTTCGTCATAAGTATAATA TAAAGAGGAAGTCAAAGGTAATACTTAGTTTGTCATTTTATTTTCTTTTATTTGTTAACATAATTATTGTTAAATTATTT TTCAGTCTAATGACATAAGTTATTTTCCTGTTTTGAAGGTGGATGAAGGACAGGAAGAGATCATGTTGAAGGTTTAATGC CTTTTTAGCTGCTTGTTGGCTGTTCTATTATTTTTATTGTTTAACTGAGACCCGTTGTTATCAGTCTTTGTTAAATGAGA CCGTATTGTTGTTTTGAAATTTAAGGCTTGAGGTCTATTTGGTTGTTTTTGTTAATTTAATGCTTGAGGTC
CDS sequence (LotjaGi4g1v0353100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCTGCAAATTCAAGTCAGCTAGAAGATGACTTACAAGGGAGTGAAAACGACGAAGATCGAGTAAACAGCGATTT AGTCATAAAGAGAAAGAGGCAGAAAACTTCAGCTGTTTTGGATGATTTTGATGAAGTTGTTCAATTTCAGCCTTCCAATT CAAGTAACCCATTTGTGAGTTGTGATGGTGTTAGATACTGTAATGGAAAGATGAGGGAAATAATTGCCACTGCTGTTATG GTTCATGAACTTCCGTTTAGTATTGTTGAGGATGAGGTTTGGATGTGGGCCTTCCAGTATGCAAATTCAAGTTTCCAAAA GGTGACTTCAGAAACTGTTAGAAGTGATTGTTTATCAATATATGAGGCGGAGAAGAAAAAGTTGAAGACTTTGTTGACTA GTGTGAATAAGATTAGTTTAACTATAGATATGTGGAAATCAAGCCACCAAGTAGATGAATATATGGTCATCTCAGGTCAT TTCGTTGATGCAGGGTGGAAGCTTCAAAAGAGAGTGTTGAGTTGTGTGAAAGTGCCTTCTCCCAGGTGTGGAATTGATGT GGCTGGTGCAATTTTCAAGTGTTTGAAAGCTTGGAGGATTGAAAATAAAGTTTTTTCAGTATCGGTTGATAATGATACTT ATAATGATTCATGCCTAGCAAATCTGAAGGAGAAGTTATCATTGAGCAGCAAGGTATTCCTCGGTGGTGCTTTGTTTCAT GTCAGATCTTATTTGCACGTATTAAATTCGTTAGTGCAAGATGGCCTAAGTAAGATTGAGGATATCATTTTCAATATTCG TGAAAGTATGGAGTATATTAACTACAATGATGCAAGGTTGAAGACATTTTGTGATGTTGTTGAACAGAAGCGCTTGGGAG TTAGAAAACTTCTTATTGATTGTCCAACAAGATGGAATACCACATTTCATATGTTGACAGCTGCATTGAAATTTAAAATT GCCTTTGCAGCTTACAAAGAAAGAGAGCCCCATTATGATTATGCACCTTCACTTGAAGATTGGGACAAGGTTGAGAAAGT TTGTACACTTCTAGAAGTGTTTAACTCTTCTACTCATGTAGTCTCAGGTTGTGAGTATCCTACTGCTAGTTTGTGTCTTG CTAAAGTTTTGAGGGTGAAACAACTAATTGATAATGCGGCTAAGGATGGAGATCTCTTCATGAGAGAAATGGTAGCTCCA ATGAAAGTAAAATTTGACAAATATTTGGGGGAATGTAGTTTGCTATTGGGTGTTGCAAGTATTTTAGATCCTAGGTGCAA ATATCACATTGTTGATATATGCTTTCCCTTGATATATGAGTCTGAGGAAGTTGCCAAAGAGAATATAAAGAAGGTACGGA GTTCTTTGGAAGAATTATATGATGAGTATGTGTCTCTAAGTTTGGAGGGTTCATCCTCTGCGGAAGCAAATAATGGTGTT AACAATCCAACATCTTCCACTAAACCTAGATCTTCATTCATCACTGGATTTGACCACCTTATGAGTATTTTGCATGAAAA GGAAGTTGTTCCTCCAGTGAAATCTGAATTACAAGCTTATCTTGATGGATGCGTTTATGTCCCAGATGTTGATAATAACT CATTTAGCGTCTTGGAGTGGTGGAGGAACAACAACTCAAAATATAAAATTTTGTCAAAATTGGCTATTGATATACTAGCT GTTCCAATATCCACCATGTCATTGGAGGATACGTTTAGTGCTAGAGGTAGAGTTATTGGTGAAATGTGTTCTAGATCGAA TGAGGAATCTATTGAAGCACTTATTTGTGGCGGGGATTGGCTTCGTCATAAGTATAATATAAAGAGGAAGTCAAAGGTGG ATGAAGGACAGGAAGAGATCATGTTGAAGGTTTAA
Protein sequence (LotjaGi4g1v0353100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSANSSQLEDDLQGSENDEDRVNSDLVIKRKRQKTSAVLDDFDEVVQFQPSNSSNPFVSCDGVRYCNGKMREIIATAVM VHELPFSIVEDEVWMWAFQYANSSFQKVTSETVRSDCLSIYEAEKKKLKTLLTSVNKISLTIDMWKSSHQVDEYMVISGH FVDAGWKLQKRVLSCVKVPSPRCGIDVAGAIFKCLKAWRIENKVFSVSVDNDTYNDSCLANLKEKLSLSSKVFLGGALFH VRSYLHVLNSLVQDGLSKIEDIIFNIRESMEYINYNDARLKTFCDVVEQKRLGVRKLLIDCPTRWNTTFHMLTAALKFKI AFAAYKEREPHYDYAPSLEDWDKVEKVCTLLEVFNSSTHVVSGCEYPTASLCLAKVLRVKQLIDNAAKDGDLFMREMVAP MKVKFDKYLGECSLLLGVASILDPRCKYHIVDICFPLIYESEEVAKENIKKVRSSLEELYDEYVSLSLEGSSSAEANNGV NNPTSSTKPRSSFITGFDHLMSILHEKEVVPPVKSELQAYLDGCVYVPDVDNNSFSVLEWWRNNNSKYKILSKLAIDILA VPISTMSLEDTFSARGRVIGEMCSRSNEESIEALICGGDWLRHKYNIKRKSKVDEGQEEIMLKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 30 | 606 | 577 | 4.9E-118 | – | |
| PANTHER | 30 | 606 | 577 | 4.9E-118 | – | |
| SUPERFAMILY | 125 | 603 | 479 | 5.23E-69 | ||
| Pfam | 362 | 463 | 102 | 1.8E-25 | ||
| Coils | 442 | 462 | 21 | - | – | |
| Pfam | 517 | 601 | 85 | 1.7E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0353100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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