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LotjaGi4g1v0363400.1

Overview

Field Value
Gene ID LotjaGi4g1v0363400
Transcript ID LotjaGi4g1v0363400.1
Lotus japonicus genome version Gifu v1.2
Description F-box family protein; TAIR: AT3G26000.1 Ribonuclease inhibitor; Swiss-Prot: sp|Q9LU91|SKI14_ARATH F-box protein SKIP14; TrEMBL-Plants: tr|A0A072TUL9|A0A072TUL9_MEDTR F-box SKIP28-like protein; Found in the gene: LotjaGi4g1v0363400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:74249383..74254417) extracted from Lotus japonicus Gifu genome v1.2.

AGATAGCGCACACCAAGCAAAACCAGAGGGTGATTTCGTCTCCCGCCACATGTATCTGCGAAGAAACTGTATCAACACTC TCCCTCACCGCCACGTGTCCTTTCCCTCACCCCCTTATCAATTTTCACCGTTGCGTTACATTTTTTTATTTTTTTTTATT CTCACCCTAATTTCATTTTTTCTTTTCTTTTTCTTCTCCCATTTATATATTTTTTTATTCCGTTTTTATTTTTCTCATTC ATTCTCTCTCTCTTCTCTCACATTCTCTCTCATTCGTTTCCGCGAACTCGATCGGCATCGGCAGCACCCTCTCCCGGTGG AAACAACCGCGATTCCCTCCCTCCGATTGGCAACCACCACCTCATTCTCCTCCTCTTCACGATTCCCAATACTTACGCTT CCTCCTCATATTTTCCTTCCCTTCAGGGTCACCATATTAGGGTTTCTTCTTCCTCTCTGGTAATTCGCTGTTTCCTTTTC TATCTTCTTCTCCCTTTGAATCCTTAGGCTTATCGGGTTGACGAGGGAAAAAAAAAAGAGAAAAAAAAACTAGAGATTTT TTCAATTTTCATTCTGTGTACAAATTCGATTCTATTGTTCTTCCTCTGATTCCATTCTAGCTGGGTTGTGTTGATTCTCC ATTAGATTATTACTATTATTATTGTTATCAATCAATCTCTATCTGGGTCTTCGCAAGGAACTCTGTGAAGTTTTTGGTGC GGTGTTTTAGTTTGCAATCCGAAATCGAGGGTTTTCTTGTTTCTTAGATCTCTTTTTATTTGTTCTTGTGTCAGGAAAAA AAAAAAGAAAAAAAAAGAATTTTTTTTGGTTTTGTGGGTAGAATCCCCTCAAAAAAATTAGGGTTTGGTTGGTTAGGGTG TGTATATTGGTAGATTGATAGGTAGAGATACATGAGATGGCGTTGAATTTGTCGCGTCGATCATTTTTTGCGGATGAGGA TAATTTGAGGATGGGGAATGGTTACCGAGTGGAGGGTAAAAAGCCTGAGATGAGTGGTGGTGGTGGTGATAGCTTTGGGA AGGTTTGGCCTGGTGTTGAGAATCCCTTTGCCAGTGATAGATGTAATAGGGGTCCCAATGTCGGTGCCAGTGCCGCCCAG GATTCTGTTTCCAAGGACATTCTTGATATTTTGCCCTCGGATCCATTTGGCATGGACATCAGCACTACCTTCACCGGGAT GGATATCGGTACTACCTTCACAGCCATCACCGGATGGCTTGAGGATTTGGAGTTTGATTATGGTGGATACCAGAGGGATC AGCTCAGGCCGACTGAACATAGTTACCAGCTGTTTGCCGAGTTGAATTTTTTTTGGAACAATGCTATGAGGTTCCACGGT TTCCCTGGCGGGAACACAGGTGTTGAGGAGAGGAATGTATTGCATGGGCAGAGCGGACCAGGCGAGTCTTCTTCTTCGAG AGGAGACGGAGCTGTGTCCTGTAATTTTGATTTCGGTTATGCTTGCGACGACATGCACGACATGTTGGGCTTGGGCCGTG AATTTAAAGATGTGGCCATTGCCAGCGTGTCAGGTGACACGTCATGTATGGATGATGTGAGTTGCCTTGGAGGAGATGAT CTTGCTCCTCATCCGGCTTTAAGTTTTTGTCTTAGTTATCTGGGGCTGCCCGATCTTCTTGTTGTTGAAGGAGTGTGCAA ATATCTGCAATCTACGGTTCGGGGTGATCCGCTTTTGTGGAGGAGTATCCACATTGACCAGCCTTTAAATGAGAGGATTA CTGATGATGTTCTTCTGGAATTAACCAGTAGAGCTCAAGGCAATCTTCAATGCTTGAGCCTGGTGGAGTGCACTAGGATA ACTGATGAAGGTCTGAAGCGTGTTCTTCTAGCCAATCCCAAGTTAATCAAGGTGAGCATGCATTACCATAATTCATTTGT GGATTTCAAATTAGATTTGAGATATGTTGCAGTTCATCTAAAACATGTATGTGTGTACTTATATTTAATTAATTTGGGTT TTGCTGGTGCTGTTGTTTTATTTTGATTAAATTTTTTAATTGGTGATAAAACCTTGAGTTGGCACTTTTGTATAACTAAG AAGTCAGCAGATTCTGTTTAGATCATTTGGCGCCTTTGACCGCTATAAGTATTTATTTCCGGAATTTCGTCGTTTGTCTT CATTAAATTCATTATTGAAATCAATTTAGCGTTATTATTAATTAATCTGTCGCAATATCATTTATTGGTAAAAAGGCAAA TATGGATGTAGGGGTAGTAAATGCTTTTTTTCTTTTCCAAAATAGTTAAACCGCATATCATTGGCTATAATTGTACATTT GCATTCCTGATTTACTGACCTAACAGTTGTAACATTTAATCATATTGCGATTTGCATCAATTCATGCATTGGTAGAAAAT GTTCTATACTTCGTTGTGGTTGGTGGCCGGTGGGAAATAAAGCCCATGTTCGAAGGGAAGACATAAAAGAAAAATAGATT ATATTCCAGCTGTCAACTGCGATACCTGTGAGATCCTTTTGTTATTTAGGTTGGGTCTGTTCAGGCTAAATAACTCTTAT GCATTTGCCATATCTTGGAACCTAAGTAATAGTGCTACCATAGTAGTCAATAGCGCGCGATAGCGCCGCTATAGCAGCGC AGCGGAGTGGCTCCCTGCCGCTATTGAAATGAAATAGCGGCGCACTTCACAATAGCGGCCGTAGCGGCGCGAATAGCGGG AAATAGCGGCGCTATATGGACAAAGGGAAAAATGACTCAAGCCCCTCGGTTTTAAATTGTTGGGGAACCTTTTTAGGGGC ATTTTAGGACTTCTCTGGACGATTTTATGTCAACCTTGAAAGAATGAAGCTTCATTCTTCATTCAGATTTGCAAATCAGA CTTCTTTACCTTGCTTTTGAGTGGTTTTTAGATGTGTGTTATTGTTCAAGACCTATGATTTTTATATCTATTATGAATTT TAGGCAATATTTGACATTTTTTAGGCATTTATATGTATATAGTAGTATACTATTAATTATATATAAAAAATCTGAATAGC GGCCATCCCGCTATGCGCTATCCCACTTTTGGGGTCGGCCGCTACGCACCGCTATCCGGGATTGACTACTATGAGTGCTA CTATTTGTGTTTCCTTCATATATCATGTGCTTCAGCGTTAATCCACTTCATATTCTCTAACTTTGTCAATTGTTATTGTG TTAACTTCTCTGAGCATTGGATACTCAAGAGCTCAGCCAACTTTTAGAGTTTTCTTTTTCCATTCATATGTTTTACAACT CTTTGGGGTATAACTAATTTTTTTCCCTTTTAAATGCAATACTATGCAGTTGAGTGTTCCTGGATGTACAAGACTCAGTA TTGAAGGTATTGTGGGTATTTTAAGAGTTCACAACTCTAGGGGTACCCAAAGGGTGAAGCATTTACACATAGGCGGCCTC TATGGTATTACACAGAAGCATTTTGAGGAACTGCAGCTCTTGTTGGGCACTGATAGCCAGCTGCAGCAGCACTCTCACAA ACCACACTACTATAGCAGAGCGAACTTATATATGTCCTGTGATGATGATCAGGCCATAGATATTGAAGTTTGTCCACGGT GTCAAAATTTAAGGCTTGTATATGATTGTCCTGCAGAGGGTTGTCAAGGGGATGGGCACCCCACTCAGATGTGCAGAGCA TGCACTCTTTGCATACCCCGGTGTAGTCAGTGTGGCCGCTGCATCAATGACAGTGAATACGAGGAAACATTTTGTCTGGA ATTACTTTGCTCTTCTTGTTCCAAGCAGCTAGTCAAATGTTCAGAAAAGATAGAGAGGAAGGATCGGCCATCCAATTCAT TTGTTATCGACGAGCAAAGTTAGGGCTTGTGTCGTCGTCATGAAGTTTCTGATGGAATTATTTTAAAGTTCCCCTATGAA GTCATGAGATATTGGGCGCTGTTGGAGTGGTGTGGTCAGTGGTGTTCTTTGTACTAGTTCTCAGAAGTGGGATGCATTCA GTGGGGGGTTTTTCTGTTGTATATAGAAAGTGGAAAGTGACTTCATTTGTGTTTCTGCAACTACTGGATTAATCTACAGG AACCAAATCAATTACCATGTTGTCGATCGTCTACTGCATAGTTACGGTTGATCTTCAATCTTGTGGCACTCTGATTATGA GGGGTGCAGTTGGATCGTTATGCTGTGGCATGCAGGCATTCTTTTTGGGTCATATTCAGGTGCATGACCAGTTTGAATTA TCTGATCTTTGGACGTTACTTCTTCATTGACTTTGTTGATGATTCACTCTTGCAAGGTTGTGGTATATCATATATGTCCC CTCTTTATTCCTTTTTTCCCATCCTTGGAGAGAAGTGAAAATAAAAATAAAAATAAGGATTTGTGATATTACGATTTAAT CCATACTCATGTCATTCCTAGCTTTGTATCATGTGATATTCGTTTATGGTGGATTTGTGGACCTTAAATTGAATACTATT GTCAATTTGTCATGAATATTTTTGGAGAAATCTGTTATTTGTGTATTTTTATTTCCCTTGTGAAGAGGTTCTTCATTATG TTGGCCCTCAAATGTCACTTGCGATGAAAAGTAGTTGAATGATTTGATATTTTAAAATGGCCCTGATATGTTTGGGATCA ATGTTACACCAAACATGCATGTCTTGGTGGCCAAACTATGTTGGCATTCAGCAGTGTGTGCTTGGCCTCGTAAGAAAGTT ATTCGTTGATGCTTGGTTAAATTTAGGAAGATGCTATGTTATGACATGTGAAGTTAGTTGGTTTCTGTTGCTAGAGAGAA TGGATAACCCATAGATTACTTCTTCGTTGTCTTTGCTTGGTTGCAAACTTTTCGGAATTGGGAGGATATACTACAACTGA AAGGAAAGAATATACACTGCTTTATTTTTTATTTATCCACTGCTTTATTTAACTTACTGTGAACTTCTGTTATCTATACA GCAAGCTATTATTTTTATTTATTTATCTACTGCTTTATTTTTCGGAATTGGGAGGATTTGTGGCGTGCAACAGTG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0363400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTTGAATTTGTCGCGTCGATCATTTTTTGCGGATGAGGATAATTTGAGGATGGGGAATGGTTACCGAGTGGAGGG TAAAAAGCCTGAGATGAGTGGTGGTGGTGGTGATAGCTTTGGGAAGGTTTGGCCTGGTGTTGAGAATCCCTTTGCCAGTG ATAGATGTAATAGGGGTCCCAATGTCGGTGCCAGTGCCGCCCAGGATTCTGTTTCCAAGGACATTCTTGATATTTTGCCC TCGGATCCATTTGGCATGGACATCAGCACTACCTTCACCGGGATGGATATCGGTACTACCTTCACAGCCATCACCGGATG GCTTGAGGATTTGGAGTTTGATTATGGTGGATACCAGAGGGATCAGCTCAGGCCGACTGAACATAGTTACCAGCTGTTTG CCGAGTTGAATTTTTTTTGGAACAATGCTATGAGGTTCCACGGTTTCCCTGGCGGGAACACAGGTGTTGAGGAGAGGAAT GTATTGCATGGGCAGAGCGGACCAGGCGAGTCTTCTTCTTCGAGAGGAGACGGAGCTGTGTCCTGTAATTTTGATTTCGG TTATGCTTGCGACGACATGCACGACATGTTGGGCTTGGGCCGTGAATTTAAAGATGTGGCCATTGCCAGCGTGTCAGGTG ACACGTCATGTATGGATGATGTGAGTTGCCTTGGAGGAGATGATCTTGCTCCTCATCCGGCTTTAAGTTTTTGTCTTAGT TATCTGGGGCTGCCCGATCTTCTTGTTGTTGAAGGAGTGTGCAAATATCTGCAATCTACGGTTCGGGGTGATCCGCTTTT GTGGAGGAGTATCCACATTGACCAGCCTTTAAATGAGAGGATTACTGATGATGTTCTTCTGGAATTAACCAGTAGAGCTC AAGGCAATCTTCAATGCTTGAGCCTGGTGGAGTGCACTAGGATAACTGATGAAGGTCTGAAGCGTGTTCTTCTAGCCAAT CCCAAGTTAATCAAGTTGAGTGTTCCTGGATGTACAAGACTCAGTATTGAAGGTATTGTGGGTATTTTAAGAGTTCACAA CTCTAGGGGTACCCAAAGGGTGAAGCATTTACACATAGGCGGCCTCTATGGTATTACACAGAAGCATTTTGAGGAACTGC AGCTCTTGTTGGGCACTGATAGCCAGCTGCAGCAGCACTCTCACAAACCACACTACTATAGCAGAGCGAACTTATATATG TCCTGTGATGATGATCAGGCCATAGATATTGAAGTTTGTCCACGGTGTCAAAATTTAAGGCTTGTATATGATTGTCCTGC AGAGGGTTGTCAAGGGGATGGGCACCCCACTCAGATGTGCAGAGCATGCACTCTTTGCATACCCCGGTGTAGTCAGTGTG GCCGCTGCATCAATGACAGTGAATACGAGGAAACATTTTGTCTGGAATTACTTTGCTCTTCTTGTTCCAAGCAGCTAGTC AAATGTTCAGAAAAGATAGAGAGGAAGGATCGGCCATCCAATTCATTTGTTATCGACGAGCAAAGTTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0363400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALNLSRRSFFADEDNLRMGNGYRVEGKKPEMSGGGGDSFGKVWPGVENPFASDRCNRGPNVGASAAQDSVSKDILDILP SDPFGMDISTTFTGMDIGTTFTAITGWLEDLEFDYGGYQRDQLRPTEHSYQLFAELNFFWNNAMRFHGFPGGNTGVEERN VLHGQSGPGESSSSRGDGAVSCNFDFGYACDDMHDMLGLGREFKDVAIASVSGDTSCMDDVSCLGGDDLAPHPALSFCLS YLGLPDLLVVEGVCKYLQSTVRGDPLLWRSIHIDQPLNERITDDVLLELTSRAQGNLQCLSLVECTRITDEGLKRVLLAN PKLIKLSVPGCTRLSIEGIVGILRVHNSRGTQRVKHLHIGGLYGITQKHFEELQLLLGTDSQLQQHSHKPHYYSRANLYM SCDDDQAIDIEVCPRCQNLRLVYDCPAEGCQGDGHPTQMCRACTLCIPRCSQCGRCINDSEYEETFCLELLCSSCSKQLV KCSEKIERKDRPSNSFVIDEQS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
157 177 21 - –
PANTHER
PTHR13382
228 483 256 2.3E-62 –
PANTHER
PTHR13382:SF9
228 483 256 2.3E-62 –
Gene3D
G3DSA:3.80.10.10
231 485 255 6.7E-14
IPR032675
SUPERFAMILY
SSF81383
231 273 43 4.25E-6
IPR036047
SUPERFAMILY
SSF52047
279 368 90 3.53E-6 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0363400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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