Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0379500 |
| Transcript ID | LotjaGi4g1v0379500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1685 family protein; TAIR: AT2G42760.1 DUF1685 family protein; Swiss-Prot: sp|Q9PQX0|Y173_UREPA Uncharacterized protein UU173; TrEMBL-Plants: tr|I3SU52|I3SU52_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0379500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75860175..75861253) extracted from Lotus japonicus Gifu genome v1.2.
ATAGTCATGAAAACAGAGTATATATATACTAGTTGATCAACATTCCTTAGGTAATTTAATCACTTCTTCTAACACAAAAT TCACAAGCCTTCTTCTAACTTTCCATAGCCGCCAGTAATGGAAGCAGAACATGTCATGAACCTCTTTGATTCTTTCTGGT TAGACCAAAACATTTTGAACAAAACATCATCATCAAAATCATCAACAAATTCTGCAGAAAATGTAGAAAATCAGGTGGTG AAAGAGTCATCAGATTCAGAGGTACCAAAGCTTCACCGGATCCGAACAGGGCACACTCGATCCATGAGTGACCAATCCAT AGCAACAAGTTTCAACCATGAATCTCTTTCACCAAACTCTGTTCTCCTTGCACCAAAACTTCAAACCATTTTCTCAGGTA AAGAAGTCGTAGACTCAGAAGCTGAAGAAACCCCTGTGGTTCAGCATCATGAGGTTCTGTTATCTGAGAAGAACAACAAT GGTAACAGCACCAGCTGTGAAAAGAAGAAGAAGAACAGGGGAAGCAAGAGTTTATCAGACCTTGAATTTGAGGAGCTAAA AGGGTTCATGGATCTGGGTTTTGTTTTCTCACTGGAAGATAAGAATTCAAGCTTGGCTTCAATCATTCCTGGGTTGCAAA GGCTAGGAAAGAAGGAAGAGGAACAAGGAGAAGAAGAAGAAGAAGAAGATTCCAATGAGTCTTTGGTTCCAAGACCTTAT CTTTCTGAAGCATGGGAGTTTCATGGAAAAAGGAAAAAAGAGAACCCTTTGATGAATTGGAAGGTCCCTTCTTTGAAAAA TGAAATCGACATGAAAGATAGTCTCAGATTATGGGCACATACAGTTGCTTCAACTGTCAGATGATGCAGTTAAACTTCAT CATCTAATTTTTTTCTCACATACACTTTTTGCCAATATCTTTGAGATTATTGGTTTTATACAGGATAATAATGTAACTAC ATTTTTTCCCCTTCTTTCTATATATTCCCTTTGATTTTTTTTTGCAATTCTGCATTCTATACACTTGTAAACTACTGTGA TTTTGAGTAATAAGGGAATAAATTTCATTCAGCATTTCA
CDS sequence (LotjaGi4g1v0379500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAGAACATGTCATGAACCTCTTTGATTCTTTCTGGTTAGACCAAAACATTTTGAACAAAACATCATCATCAAA ATCATCAACAAATTCTGCAGAAAATGTAGAAAATCAGGTGGTGAAAGAGTCATCAGATTCAGAGGTACCAAAGCTTCACC GGATCCGAACAGGGCACACTCGATCCATGAGTGACCAATCCATAGCAACAAGTTTCAACCATGAATCTCTTTCACCAAAC TCTGTTCTCCTTGCACCAAAACTTCAAACCATTTTCTCAGGTAAAGAAGTCGTAGACTCAGAAGCTGAAGAAACCCCTGT GGTTCAGCATCATGAGGTTCTGTTATCTGAGAAGAACAACAATGGTAACAGCACCAGCTGTGAAAAGAAGAAGAAGAACA GGGGAAGCAAGAGTTTATCAGACCTTGAATTTGAGGAGCTAAAAGGGTTCATGGATCTGGGTTTTGTTTTCTCACTGGAA GATAAGAATTCAAGCTTGGCTTCAATCATTCCTGGGTTGCAAAGGCTAGGAAAGAAGGAAGAGGAACAAGGAGAAGAAGA AGAAGAAGAAGATTCCAATGAGTCTTTGGTTCCAAGACCTTATCTTTCTGAAGCATGGGAGTTTCATGGAAAAAGGAAAA AAGAGAACCCTTTGATGAATTGGAAGGTCCCTTCTTTGAAAAATGAAATCGACATGAAAGATAGTCTCAGATTATGGGCA CATACAGTTGCTTCAACTGTCAGATGA
Protein sequence (LotjaGi4g1v0379500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAEHVMNLFDSFWLDQNILNKTSSSKSSTNSAENVENQVVKESSDSEVPKLHRIRTGHTRSMSDQSIATSFNHESLSPN SVLLAPKLQTIFSGKEVVDSEAEETPVVQHHEVLLSEKNNNGNSTSCEKKKKNRGSKSLSDLEFEELKGFMDLGFVFSLE DKNSSLASIIPGLQRLGKKEEEQGEEEEEEDSNESLVPRPYLSEAWEFHGKRKKENPLMNWKVPSLKNEIDMKDSLRLWA HTVASTVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 248 | 248 | 7.0E-82 | – | |
| PANTHER | 1 | 248 | 248 | 7.0E-82 | – | |
| MobiDBLite | 23 | 65 | 43 | - | – | |
| MobiDBLite | 23 | 43 | 21 | - | – | |
| MobiDBLite | 44 | 60 | 17 | - | – | |
| MobiDBLite | 114 | 135 | 22 | - | – | |
| Pfam | 141 | 173 | 33 | 7.5E-5 | ||
| MobiDBLite | 176 | 198 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0379500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…