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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0382000 |
| Transcript ID | LotjaGi4g1v0382000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Agamous MADS-box transcription factor; TAIR: AT4G18960.1 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|Q40885|AG_PETHY Floral homeotic protein AGAMOUS; TrEMBL-Plants: tr|Q533S0|Q533S0_LOTJA MADS box protein AGb; Found in the gene: LotjaGi4g1v0382000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76071317..76077688) extracted from Lotus japonicus Gifu genome v1.2.
CAGATGCATAAACCATCAATATTGATGAAAGGTGGTTTCCCCTTTATAAATACCCATCTTTGGCCACTTTCTGATATCTC TCCTTCCACTTCTGCTAAGTGGAAAAGAAGAGAGAAAATAGTATACTACATACAAAGGGCTTGAAACTTTGTGCTCCAAT CCTTAATATAAATTGTCTACTTTGTTTCCTTCACCAGGTTAGTGAGCAAAATTGAATCATCATTTACAATCCTCAATCAA TGCTTCACCTCTTTTGGTGGCAACTTTTTCACTTGAAACAAAGATTTGCCAACACAAACTCTGCTAGATTTGTAAACTAT TACAAGCAAATGAAATTTGGAGCTAAATAGCTAATTATTTAAAAGTTGTGTTGGTGCCTTGAGGCTTTTTGTTATTTTGA TTCAATTCATTTTACCTTTTAAGATTCTTCTTGATCAGAAAAAAAAACTAGCTGCAGTAAGACCAGAGACTATTCCTGGT TTTTGTTTTGAGGAAACAAAATTTGGTGACATTTTTTACTTGGTTCAGGTTGCAACAATGAGTTCTCCAAACCAATCCAT GTCAGCTAATAATTCTCCTCAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACAACCAATCGCC AAGTAACCTTCTGCAAACGCAGAAATGGGTTGCTTAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAAGTGGCT CTCATAGTCTTCTCAAACCGTGGCCGCCTCTATGAATATGCAAATAACAGGTACCCTTCTTTCTTTCTTTCTTTTTTTCC AGTTTTCTTATTGATTTGTTAAAAATGTTTCTGTTACTTCTTTTTTAGGCATACTGAATTTATATTTTCTCTCATGCAAA TTCATTTTTCAAAGAAGTTTGAGCACAAAGATCTAATCAATTTTGTTCCTCCCAAGTCATATTGTTTCTTCTATTAGTTT TGGCCTTTTTTCTCCTTCTATGAACTTTCAGAGACAGATAGATCTGTGTCTAACTATGACAATTTTCCTAGTTCTTGGTT TGGTGGGCACATATGTAGATCTGGTGAAACAGATACATATAGAAGCAATATGGTTGTTAGTAGCAACAGGTTATAAGAAT TTGGGAAAGTGAAATAAGCCAACCTCTAACTCCCTCTTCCTTTTGTTCATGAACTATCTGTTTCTTTTTTCCTCTTTCCC TTTCTATTATTCCCCTCCTCTCTCTCTCTACCCATCTAAAAGACTATATAAGTGTGTCTTTGTATATTAGTTGAGTTAAA GCACATTCATCAATGTATGTGAAGAGTTTTGTTCATTTTTATCTCGAAATAAGTGCTAATGCTAGTTAGCTTTGACGCCA ACCATACCTAAGATACCCTAAAGCAAAGTTAAGAAGACCTAAAACAAATTAGCTGTCATGTTTCCATTACCCAGTCCATT TCAACCCCTTGCCATTTCCTTAATAACAAGTCAGTTAGACATAAAAGCACACTGCAGTAAGTTTCAATAAATTGTCAATG ACTTAAATAGAAATTTTTGAACTAGCACAAAAAATGGGAAGGGTTAGGGTTTGTAAAAGCCTAAAAACTAGTTCCTCTCA TATTCTGCAAAATTTCTAACCCAGCCCTACAAAATCTGATCAGAAAACACTGGCCCCTTCTTAAAGTTTTTGATCCATTC CTAAATTGAACTGAAAAAATCTCCTAAATCTAACTTTCATCCACGTGCAACATCTCAACCTAGGTAAAAATATATAAACC TAGAAATTAGGGTTTTATTAATTAGATTCTATTACATGAATTTGACAGCAAGTAATAATCAGGCAAAAGACAAAAAAGAA AGAAAGAAACCTTTTTGCATAATATAATAGTTAGAACTTAGAAATGATGTCAAAAACACAATTTTTCTCGTTTAATAACT TCCCCATCCGTTTTAGGAAATGGAGTTAGGTAATGCAGGGTTAGGGCTTTAAGGGCTACACACACTAGGATTTTGTTTTT GTCTTGGTTGGAAGAATCTTTGGTCACGTCACACGTGATTAAATTATTCATTTTTTCAGTTTCTTGACATTGGACAGGAG AGTTTATGTCACCATTTCTATACTTGGATACCTCTTTAAATCTGAATCCTAAAGTTTTAGCTTCTCTATGGCCCTTACAT TACACTACTAACACTAGAAACCCCCTCTCTAGGAAACTTTCTCTTTCTTTCCCTTCTCTCCTCATAGGGTAAAAATCCTT TTACATGGATTGGAAGCAGTGAAAGAGAGTGATGAGGCAATGAAGAGGATCCAAACTGGCATATCATAACTGTGAAAGTT ATGGACTGAGAAAGAAAAAGAAAAGGGTTTTCTAAGCTTAATGGGTGTCTGTGTGTGTGAAGTGAGTGAATGAGTTAACG TACGACAACTTGAGAGAGCCAATGGGAGAGTTCTGAGCATCTTGGTTTCTTTCATGCAATGGGAAGTGTACATACAACTC TAGCTGCTTCTGCTGCTTTTGCAGTAGCTGAAATGGACGGCTGTGATGCAAGCAGACTCTCAGAAACAGACAGAAAAGAC TGAAAAGAAAAATAAGGGAAATCTATTATAGATCCTTCAAGATTTAAAAAAACTTGCACACCATATTGATTTGATCTCAA TAGACATCCAAAGAAGGCAAACGCTTTTTAAACACTTCATCATTTTTCCTATATTTTTTTTAATCATATTTATCATATGA GTGCGCTATTATTTTATACGATTCAGCATAATTTATATTTTTTTAAATATAATATAACAACCCGAAACAGAAAATAGTTT GTTCATTATCTTATATCACATTAATTTCTTATTTTCTTTTCTTCTTGTCTTATTTTAGTTATTTGTTAAATGATTACAAT ATGCGGTTGTGTATACAACACATTTCATTTGATTTTTGTAGAGTTAAAATTAAAAGTTGAAAAATATCAAATTTAATGTT TTTCATAATGCTTATAAGAAAAATGTATTTCATAATATTAAATGATGCATTTCAAAATAATTATTACTTTAGACTAATTC TTATGTGGTGTATATAAATGAAATTTGCATTTTGATACTAATAAACAAGGACAACCCTATAAATTAAGGTTTGAGCCTTT GAGGTTTACAATGGTCTATGTCAAAAAAAAAAAAAGGTTTACAATGGTCAAACCAATCACATTGTGGGAACCGATGCCAG CGTGACAGGAGCAGCCAATCAGGGGCTCGAGAAAATTAAGGTTTCGATTGATTGACAAAGAACTTTGACGTCTATGCCTT AGTAGTGAGATCATCTGATGTTTACTTTTTAAGATTACGTTTAAGATTCAGTACTGAGTTAAAGTTGGATGATTTGACCA TCAACCACAAACCATGTCTATATATGGTTAATCTCAAACTCATTCCTTCACTCCCTTTTGTATTTTTCTTTCCATTTATG CACAAAACAAGAAATCGAGTTAGGCACATTGGTCTTCTAGTTTAATGAGGAATCTATATAGACTTGGTAAAATGTGAAAT ATGATGATGTAAAATATGCAATGAAAGGAAAATTAAGAAAGAACTAATGATGCAGTTCTCCTACTGATGTTTAGCCGTAT AAGGAAAATAATTTGGAGTTCCAAATTAATTTTTTTTGGCTCAGTTCCATTTTGGATCGCTTACTGTAGATTGTGTTTGA TTTTGGCCCAAATAATCTTTTTCCAGCTAATAAAATTCCCATACTTTTAATATTACATAAATTTTGAAATTCTCTCAATT TTCTTATGTATAAAATTATTAATTTTTTTTTAAAATATTTTAGAGTTTATAATACATTAGATTTTAAAAATAAAAATAGT AATTATAAGAGGACTAAAGCCACACATAATCCAAATTATGATGAGAATTAAAAGTACAATTATAAGTCTTATTTTTTTCA CATTAGGGTAAAGGATACAAAATAGATAACTTGGATGACCATAGATGGGGGCTCAATCATAACCCCCGACAATTAAAGTC CTAAAAAATATCTCTACTAATCTTGAATTGTAGTTTTTAATTAGTGATCAGTGGGAAAATAACCCTCTTTAGTATAAATT AACAACATTGAAGGGAAAAAAAAAAAACTATTGGTTGGGTCCACCATTTGGGTGCTGACTGTGTGACGAAAGAGTTTCAT GGCTATTGGCAGTAGGAATATCTTGATTTTTTTTGAAAGTAGGATATCTCAATTAAGATAAAAAAAAAAAAGAATGAACT CAACAAGCAATGATCTTTCGTAGAGGTCTCAGGTTTGAGGTTCAATGGATGCAGCTGCATTGAATATTTGGTAAAGAAAG CTTTGCCGCTTATAATGATCTTACCCGGCTAGAAATTGCGATAGAAATTCAACAAAACCAAAAATAAAAGCATGCAATCA TCTTTTATGCTGATTAGAATTCATAAATCTTCTTCCCTTTATTATATGCCCTTGCTGAACCATTTAGCATACCAATTCAC AATGAACTGTAAAGTGTATATATATTATCATTATTTCAGTGTCAAAGCATCTATTGAGAGGTACAAGAAAGCATGTTCAG ATTCTTCTGGAGGTGGATCCACTTCTGGGGCTAATGCTCAGGTATTCACTGTTCATTCTCTATATTTTTTCCAGTGTGAT AAAATTGCAATGTAGGAAACTGAGTGTAAAATTAATGAATAAACTAACCCTTTTAATAACCATGATTGCACAATCTCAGT TTTACCAGCAAGAAGCTGCCAAACTGCGTGTCCAAATCAGTAACCTGCAGAATCACAACAGGTAAGTTGATTTAGTTTTG CAAGTACAAGGACAAGAAAAATTACTGTAAATTAAAGAAAAAATGAAAAATGAAAAATGAAAAATCATTTTAGTGATGAA AATATTTGAAATTGCAGGCAAATGCTGGGTGAGGCTTTGAGCAACATGAATGCCAGGGATCTCAAAAACCTTGAGACAAA ATTAGAAAAAGGAATTAGCAGAATTCGATCCAAGAAGGTTTTCTTTTAATAACATTAAGATTCTTATCATGTTTGAAACA ATAGATAATGTGATAATTAAGCTGATAACTTTTTCTTTCTGATTTTGTCCTTCATCTTCCTTTGTTTGTGCTAATTCCCG AACATCATCATCAGAACGAGATGCTATTTGCAGAAATCGAGTATATGCAGAAAAGGGTAAATGTGCTCCTTGTATTCATC TTTTAAGATTTTAAGTCCAATTTTTGCTTACAATTTTCATGTTCAGCATTAATCAATTGAGTCATTGCAGAAAGGTTATA TAGAATGTGTATAAGAGCTACATATTTTGTTAGTGCATTTTACAAGATTAATTTGTTCTAAAATGGGTAGCTAAAATGTA CATTTGATGCAGGAGATAGACTTGCATAATAGCAATCAGCTTCTTAGAGCAAAGGTCTGTTAGTGTCTCTCTGTCCTTAA TTTCTTCACATGCTTTTTTAAATGTGTGATGTTTGTTGTATTATTAAAGGTTTATGAATTTTTTTTTGTGGTGTAGATAG CAGAAAGTGATGAGAGGAAGAACCATAACTTTAACATGTTGCCTGGAACCACAAACTTTGAATCTCTGCAGCAATCTCAG CAGCCCTTTGATTCTCGCGGTTTCTTCCAAGTGACTGGATTACAACCCAATAACAATCAGTGTGCAAGGCAAGACCAGAT CTCACTTCAATTTGTGTAAGCTTCTTCTTCCTTTCTAGGCTCACATTCATTCATTCTCTAATCTCTATATAACTTTCTAG CTAAAAGTAGTTTTTTTTTCAATTCCATAAGTGTTACATCAATAGTTGTTACTACTTCCGTTCCATAATGTTTGTTGTTT TAACCGTTTTTCTTTTTTTTTTCAAAATTTCTGTTGTTTTTATAATGAAGAAGACAATGGTTTTATGCATAGACATGAAA TCTAATTAGTCCATTCCCTTTTCTTACTCCTGTGCAGTTGATGTGTTTGTGCTTAAGAAGGCAAACACTTGTGTAATTTG GCATCTAGTATATGAAAGCAGCTGCCTTATAAAGGAAATATAATCAGAGCTATGTGGAGGGGATTTATTAGGTGTTGCCC TTAGAACTATGTACTATAAGCTACCTTGCATCTATTGTGGAAGTTTGTAGAGTTGTTTGTGATAAAAATGTTTGTTATGA GATATTAAGGTTTGTAACTAGACAAATTACAAACTCTGCAATAAGCTACAAATATAGACTATTTTATTCATAAGCATTAC TTTGCTAGTGTATCTTTTTTATAAATTGAGTTGGAAGTCTGTTCATGTATTGCATTCAACTGATATTTAAATAAATACAC ATCAAAACAAGTTTGGCTCCCTGAAAGTTTTTGATGGGTAGTCTTTCTTTTT
CDS sequence (LotjaGi4g1v0382000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCTCCAAACCAATCCATGTCAGCTAATAATTCTCCTCAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCG GATTGAGAACACAACCAATCGCCAAGTAACCTTCTGCAAACGCAGAAATGGGTTGCTTAAGAAGGCATATGAGTTATCTG TGCTTTGTGATGCAGAAGTGGCTCTCATAGTCTTCTCAAACCGTGGCCGCCTCTATGAATATGCAAATAACAGTGTCAAA GCATCTATTGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGAGGTGGATCCACTTCTGGGGCTAATGCTCAGTTTTA CCAGCAAGAAGCTGCCAAACTGCGTGTCCAAATCAGTAACCTGCAGAATCACAACAGGCAAATGCTGGGTGAGGCTTTGA GCAACATGAATGCCAGGGATCTCAAAAACCTTGAGACAAAATTAGAAAAAGGAATTAGCAGAATTCGATCCAAGAAGAAC GAGATGCTATTTGCAGAAATCGAGTATATGCAGAAAAGGGAGATAGACTTGCATAATAGCAATCAGCTTCTTAGAGCAAA GATAGCAGAAAGTGATGAGAGGAAGAACCATAACTTTAACATGTTGCCTGGAACCACAAACTTTGAATCTCTGCAGCAAT CTCAGCAGCCCTTTGATTCTCGCGGTTTCTTCCAAGTGACTGGATTACAACCCAATAACAATCAGTGTGCAAGGCAAGAC CAGATCTCACTTCAATTTGTTTGA
Protein sequence (LotjaGi4g1v0382000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPNQSMSANNSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVK ASIERYKKACSDSSGGGSTSGANAQFYQQEAAKLRVQISNLQNHNRQMLGEALSNMNARDLKNLETKLEKGISRIRSKKN EMLFAEIEYMQKREIDLHNSNQLLRAKIAESDERKNHNFNMLPGTTNFESLQQSQQPFDSRGFFQVTGLQPNNNQCARQD QISLQFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| PANTHER | 13 | 211 | 199 | 3.2E-112 | – | |
| PANTHER | 13 | 211 | 199 | 3.2E-112 | – | |
| SMART | 18 | 77 | 60 | 2.3E-42 | ||
| ProSiteProfiles | 18 | 78 | 61 | 34.076 | ||
| SUPERFAMILY | 19 | 90 | 72 | 1.44E-32 | ||
| CDD | 19 | 88 | 70 | 2.29751E-44 | ||
| PRINTS | 20 | 40 | 21 | 6.2E-33 | ||
| ProSitePatterns | 20 | 74 | 55 | - | ||
| Pfam | 27 | 74 | 48 | 2.1E-26 | ||
| Gene3D | 30 | 93 | 64 | 7.0E-29 | ||
| PRINTS | 40 | 55 | 16 | 6.2E-33 | ||
| PRINTS | 55 | 76 | 22 | 6.2E-33 | ||
| Pfam | 103 | 188 | 86 | 4.7E-26 | ||
| ProSiteProfiles | 104 | 194 | 91 | 14.343 | ||
| Coils | 104 | 131 | 28 | - | – | |
| Coils | 141 | 161 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0382000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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