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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0384200 |
| Transcript ID | LotjaGi4g1v0384200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kinase-related protein DUF1296; TAIR: AT1G29350.1 RNA polymerase II degradation factor-like protein (DUF1296); Swiss-Prot: sp|A4FVR1|GIP1L_ARATH GBF-interacting protein 1-like; TrEMBL-Plants: tr|A0A0R0IQR6|A0A0R0IQR6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0384200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76273440..76280052) extracted from Lotus japonicus Gifu genome v1.2.
GAGAAGGGTAAGTTAGAAAAGGAGAAGAAGGGTTTCAATTTCTCTCTTTTTCCGTTTGGGTGCAAATCTAGGTTTAGAGA GAGAAACACTGAGAGAACGAACGAACGAACTAGATAGAAAGAGAAAGAGACTCTCTATTTTGATCGCGGTGTTTCTATTT GAGGCGGAACCCTAGCCGGGACTGTGCGTGACGGCGGCGGCGGATCGGAGAGTAACCACCATGAGCGGCAAAGTCGGTGG CGCTGCGGGCCACAACAAGGCTTCACTCGCGGGGATCCCGCCGGCGAGTCGGAAGATGGTTCAGAGCTTGAAGGAAATAG TCAGTAACATCCCCGATAACGAGATCTACGCCACTCTCAAAGACTGTAACATGGACCCTAACGAAGCTGTTAGTCGCTTA CTCTCACAAGGTACCGAGAACTCTCGAACTAGGGTTTTTCAATTTCAGCACTATGAATTCAATTTTTTCATTCCCTTTTG TAATCTCGTGTTTGCTAATCGTTTTTGTAGATCCTTTTCACGAGGTCAAGAGCAAACGAGAGAAGAAGAAAGAGGTATTA TTATTTATTTTTTTGAAATTTAATTATGTCTTCAATCTCTGTGTAATTTATGTATTTGACATGTTTTTGTGGTTATTTTG ATTCAGAGTAAGGATACAACAGATTCTAGGCCTCGCGGGGCGAATAATAATTCATCTAGTCGCGGCGGCGGTGGTGGTGT TAGAGGTGGTGCTGACCGTTATGCTGGGCGTGGGGGCGCGGCCCAGTTTAATAGTAGTGGTATGTGTGGAGGGTGGTTGT TGCTATTTTTGAATTATGTGAATTGAATTGATATGCTTTTGTTCTAACTTTGCTGTGGAGTTTATATATGAAGTTTGTTT TAGTTGTTTTTAAAATTTTGTATGCTGTGTTTGGGGATCAGATTCTGGTCTCCTGCAGGGAAAGCCTGCTTCGAGGAAGG AAAATGGAACGCCGGCTTATGGAGGAGGCTCGACGTTTTTTGCACCCAATGCGTGGGATAATAGTGCGAGCAGACAAGTA CCATCCTACAGCCACAGGTATATTTTCCTTCTTCACACATGTAGTTAGATAGTAAAAGAACCGTGCTTGATTGAATTCGA ATTAAATAAATTCTTTAGGATAGCGTGTGTGGCTTAGTTATTCTCAAGTGAGACTGAATCAGGCTACTTTTATATGGCAT GAAATGCAATAGTATGATTTACAAATGTTAAAAATTGTGGCAGTGATTCTGCTGGTGTCAGTGATGGAGTATCTTCATCA TTACAACATGGTGGAGTGCAATCTGCATGGGCGTTGAACCCGGGTCAAGTGTCAATGGCTGACATTGTCAAGATGGGTAG GCCACAGCCCAAGGCACCCGTGCATAACTCAGCAGCGTCAAATCACAATTTGAATTCATATCAAGGTCATGCTTCCAAGG TTTCAGAGAACACTAATGATCAAAGCTTTGCTGTTAATCCCAATGTTGAACAGAATGATGAATGGCCTTCTATTGAACAC CAACCAGCTGTTTATGGCTCCTCGGTCGTTGATACGCATCCAAATACTGAGTACTACACGAACTCATCTAACTTTGGTGA AGCCAATCGGCAACTGAATAACCATGTTGATGAATTTGTACCTGAAGATAGTCCTGTTGAGAATCCAGACAATGTCGGAT CTACTTCTGTACCTGTTCAAAGTGTACCTGAGGATAGTTCAGAAAGTGCATCTGCTTTTGATGGTAGCTTGTACAAGGAC ATAAATTCTTACCAATCTCATCGGCACCCTTTTGATAATAATGAAGGTGAAGAGGACGCCTTTTCATTTTACATGTCTTC TGCAGTTGTATCTCTTTTCTATTGAACATATATGCTTTCCATAAAATTTGTTTTAACTACTTGAGATAGAGTGATTATAC CACCATATAAATATGCTTTAAAATCCTCCACTTTTCATGTTTTTTATGTCTATTTTGTACACTTTAAAGCACACATGCTA GATTTTGCCAGAAACACTTGACTACTTGAGTCATGGAAATGTCATAAGGCGATGTGCTTTTGATATCCCTTTCTCTAAGT CAATCCGATTTTTTCATGATTATCTTTATCACAATTATTTGTTCATTTTGTTTTTTCCCCCTCATCCTCCATATGTTTGA GTGTATTAGGAGCATTATTGTAATACTAATTATCTAATATATTCACACACCTGTATATGGTCTCTAATAGTTTAAATTCT TTAAAAAGTGTATTAATTAACTTAATACTGCTATTTGATTATCATGACAATACTCCATATGAGCCTACATACATACGGTC TGAGTCTTAATTTCTTTCAGCTGAAGATGGTACTTCATCGGTGGCTGCAAACTTAGAGCAGCTTAATTTACACAATGATG ATCAAGGGACAGAACCAGAGGAGGAGAATCCTTCTGTAGTAATTCCAAATCACCTACTACTTCATACTCCAGAATGCTTA AATCTTAGCTTTGGAAGTTTTGGAGCTGTCAATGATGCTTCCCTTTCTGGATCTGGGCCACATGCTTCTAGGCCTTTGAA AAGTAACTTGGAGGATACATCTGGAGCAACCGATGTTGCAACAATTGGGTCCTCAGATGCCAGGTATGTACCTAGGAAAT GGTATGCTTTATTGTGCATATTATAGTCATTCATAGTTCACTTAGTTGTATGTCTTAAATTTTTCTTGCAGAAATCCTGA GTATTATGGAGACGAGCATCTTACTACTACCTCAGATCGGAATATGGCTCACATAACCAACGTGGATGCTGGGGTTTATG AACATCCTTCCATTTCACAACCTGAGGGTTTAAAACCCGAACCCCCTGAAACTTCTCATGAAAATCAATATTCATTTCCT TCATCTTCACATGAGTTTACTTATGAAAATGCTCAACAGCCAGATGTGACATATCCTCATTCACAGACAAGCTCGCAGAT CCAGAACCTGTCTCCCTTCTCTAGTGTAATGGTAATACATATAGTTGTTAGATTTTGGATGTGCATTATGTAATATATTT CAAAACTGCTTCTTACTTTGGGTCCTAAATTTATTAGAGCTCTATAACGATCTAATCAGATATTTTCTAATGTTTCAAAT AGGGAATGGTTGGTGCTTTGATGCTATCCATTTTTAGAGAGTAAATGAAGCTTATTCTTTCCAAAAAATTGTGGTAGTAG AATCGTGGTGTATTGTAGAGTTACGAATTTCAGGATGGGTCTTATTACGGGTCTTCAATTAATCAGTTTTTTTTTTTTTT TTCTGGAACGAACTAATTAGAGACTAATGTTAATGCTAGGTGATAATTGGTTCTTTGCTTCTATACATTCCTAGAGAGTA AATCAAGTAGATGCTCTCTGTGAAATTGTGGTAGTTCTATAGTAGAATACTGGCTTAGAAAAATTTTAAAGTGTATTTTG TGAAGGAATTGAGAATTTCAGCATCAAATGCCTCCTCTTGGATATTTCATTCTTCTTGGTGTTGTGCTGTGTTCTTACTG TTCTTCTCTGTTGCATAGAATAAACCTGGTGTTTCTTTGATTTGTTGTATCTTACAATGTTGATACTTTGATAGGATCTG TCAATTCTGCTATCAAGATTTAACTTGTAGTGCCATTTTTTAGCAGGCATACACTACTTTGCCCAGTGCTCTGTTGGCTT CAACGGTTCAAACAGCAAGGGAGGACAACCCATACTCACCTTTCCCTGCAACTCAATCGATGCCTACGAAATATAGCAAC ATAGCTTCTTCAATTGGTGGTCCCTCTATAACCATGTCAGAGGTACACTTCTGCACTAGCATATTCAACCTTTTTTTGTT TATTAGCTTCTTTGAGTGGTTGAATCATAAATAAAACCTAGTATTATGGTTTGTAAAGTGTTTGATTATTCTCATCCAGA AGTGTTTTAGAATTCATTGGCACAATGTATTTAAGCCTTAAGGGCTGCTATTATATACCGATAAATTCTGGTTAACAGTG AAAAAAATTAACGACAACCACATCTGTTAAGGAAATGGAAATTTCTCCCTAGCTATTATGTTTATAGGTCAACTTTGGTG TTGTATGTGTATTACTTACATACCAACTGTTTACTTGAGCACCATGTGACATTATTTAAAATCCGAAGATGTCCTGATTG TTTTCATTCATGAATTATTGTCAGAAAAGGAAAATCCTTTTACATGTTTTGGTTTAAGCTACTTGAGTGATAACTGATTA CTACCTTTATATGAGCTGATCTTTTGCTGATCAGTGTTTCCTATATGACATTGTATGAAGGAAAAAATGCTTGCAATCCT CTCTTTAACACTCCAATTTATTGGTTAAAGTTCATGTGGGGTCCACTAAAAACACGGAACCCACTTCTAATATAGTGGGC CCCACATGAATTTCTACCAATCAATGAGAGTGTTACTAGCATTTCAGAGGACATGTTAAATGAGGAAGGCTTTTGAACTT TTGTGCCAAGGTGTCAGAATTAACTTGACCTGTGGCCAATATAGTATGTGTTTGATTTAATCCATATTTTTCTGCAGTGC ACTGCTTCCTGGTTGTATGCTAGTGATCTATCAGTAACATGCCTTATGTTGTTCCATGCATATATTGATTACAAGTAGTG ATTAGATGATGAGCTATTACATATTTATACCAGTGTTAGTGTATTCTGAGTATATCAGTATCAAATATGGATATGGTAGT AAAGATGAACCACCGTTTTTTGGAGTATCCTTATTATGTAAAAAAAATTACCCGTATTTTTAAGGGTATACCAAACTGAA TCTAAAAAATGTTATAGTTCATAAATGTCATGGGTAGTGGGTTCATCTGTATCTACAATGTTAGCTATTCATTACATTTG CAATGTGTGTTAAATTATATTTATTTTCACTCTTGTTTTTAAAGGGTATATACCCAATTGTGTCCAAGACATATTCTTAG AAGAAGTCATAGATGCGTCTGTATTAATATTGTTTAGTATTACATATATGCTCTGAGTAATTTGTGTCTTGATTGTATTG CTTTAGTGAGAGAGAACATAGGAGATCAGTCTTTTGATAATTTTTTTCATCAACATGCAGGCTCTAAGGGCAAACAACAT TTCAGCGCCTCAACCTAATCCACAAGCTTTGCCTGGTGCCAATGTTGCCACTGGACCTTCACTTCCTCAACACCTTGCTG TCCATCCCTACGCCCAGCCTACTCTTCCTCCGGGACATTATCCTAACATGATAAGTTATCCATTTTTGCCTCAGAGCTAT ACCTACATGCCATCTGCGTTTCAGCAGGCTTTTGCTGGAAGTAGCACATACCACCAATCTTTGGCAGCTGTGCTTCCACA GTACAAAAACAGCATTTCTGTCAGCAGCTTGCCTCAGTCTGCTGCTGTTCCATCTGGATATGGTTTTGGAAGTTCCACCA GCATTCCTGGTGGAAACTATCCTTTAAATCCACCATCTGCCCCTACTAGCACAACCATTGGATATGATGATGTTATAAGC TCCCAGTACAAGGATGCCAATCACATGATTTCACTACAGCAGCAGCAGGTAGAAAGCACTTCATTTCAAAATGCTTCAAC TGTTTCTAATTCTGTTACAATACAATATACAATGAAGAGAATGAACGAGGCTGATTGTCTTTTTTTTTTTCTTTTTTTGT GTCAGAATGAGAATTCTCCAATGTGGGTTCATGGGCCCGGCTCGCGAACAATGTCTGCAGTTCCTCCCAGCACCTATTAC AGCTTCCAGGGACAGAATCAGCAACCGGCTGGGTTTCGACAAAACCAGCAGCCGTCCCAGCAGCAGCATTTCGGACAACT TGGGTACCCTAATTTCTACCATTCTCAGACTGGGATGTCTCTGGAACATCAGCAACAGCAGCAGCAGCAGAATGCTAGGG AGTCTCTTGCTGGTTCTCAGAGCCAACAACCTAAGCAGTCCCAACAAATTTGGCAAAACAGCTACTAATCGTAATCGCTC CCGGTTTTTAAGGGTCTTGATGTGAGCTTGATATTATCAGAGGCATTTCCACGGTCTAATTATCAAGTGTTTGGTCTGAA GCTGCCCCGTGGAAATTGTATTCTACATAATTATGCTCGTGATGTTTAACTTAGGTACTTAAGTTAAGTGTGTGCTGATT TGGTGTACTGCAAACAATACTCTTTTTTCCCATTAGGTTTTTCTCATCTGGTTATAGTGAAAAGTTTCTTGGATGTTACC TCTTTTAAGCTTGTCTGATATTGCTTCTTCTTTTCTTAGTCTTTTGATATGCATTCCACATAGCTAACAAATCATTCACC ATCACCCGTATGAATCAATACTCAATAACATAATACCGTTTAGATTGTTTGATATGAAGATTTGCTCCTCTATTACTGAA AAATGCATTCATGCCGTTATTTTGATGTTTTTGTCCTATATCCACCTTTAATTTTTATAACTTACATGACCATTTTTGTT GATTTGGTCTTTGATTTTAAGATAATTAAACACACCCTTAGGATTATAATCTTGTTTGACTTTGAAGGATCAGGTTATTA GGATTTCCTACATCTCGAGTTTGAGCATATCTCACTCATTTTAGTTGGCAAAT
CDS sequence (LotjaGi4g1v0384200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGGCAAAGTCGGTGGCGCTGCGGGCCACAACAAGGCTTCACTCGCGGGGATCCCGCCGGCGAGTCGGAAGATGGT TCAGAGCTTGAAGGAAATAGTCAGTAACATCCCCGATAACGAGATCTACGCCACTCTCAAAGACTGTAACATGGACCCTA ACGAAGCTGTTAGTCGCTTACTCTCACAAGATCCTTTTCACGAGGTCAAGAGCAAACGAGAGAAGAAGAAAGAGAGTAAG GATACAACAGATTCTAGGCCTCGCGGGGCGAATAATAATTCATCTAGTCGCGGCGGCGGTGGTGGTGTTAGAGGTGGTGC TGACCGTTATGCTGGGCGTGGGGGCGCGGCCCAGTTTAATAGTAGTGATTCTGGTCTCCTGCAGGGAAAGCCTGCTTCGA GGAAGGAAAATGGAACGCCGGCTTATGGAGGAGGCTCGACGTTTTTTGCACCCAATGCGTGGGATAATAGTGCGAGCAGA CAAGTACCATCCTACAGCCACAGTGATTCTGCTGGTGTCAGTGATGGAGTATCTTCATCATTACAACATGGTGGAGTGCA ATCTGCATGGGCGTTGAACCCGGGTCAAGTGTCAATGGCTGACATTGTCAAGATGGGTAGGCCACAGCCCAAGGCACCCG TGCATAACTCAGCAGCGTCAAATCACAATTTGAATTCATATCAAGGTCATGCTTCCAAGGTTTCAGAGAACACTAATGAT CAAAGCTTTGCTGTTAATCCCAATGTTGAACAGAATGATGAATGGCCTTCTATTGAACACCAACCAGCTGTTTATGGCTC CTCGGTCGTTGATACGCATCCAAATACTGAGTACTACACGAACTCATCTAACTTTGGTGAAGCCAATCGGCAACTGAATA ACCATGTTGATGAATTTGTACCTGAAGATAGTCCTGTTGAGAATCCAGACAATGTCGGATCTACTTCTGTACCTGTTCAA AGTGTACCTGAGGATAGTTCAGAAAGTGCATCTGCTTTTGATGGTAGCTTGTACAAGGACATAAATTCTTACCAATCTCA TCGGCACCCTTTTGATAATAATGAAGCTGAAGATGGTACTTCATCGGTGGCTGCAAACTTAGAGCAGCTTAATTTACACA ATGATGATCAAGGGACAGAACCAGAGGAGGAGAATCCTTCTGTAGTAATTCCAAATCACCTACTACTTCATACTCCAGAA TGCTTAAATCTTAGCTTTGGAAGTTTTGGAGCTGTCAATGATGCTTCCCTTTCTGGATCTGGGCCACATGCTTCTAGGCC TTTGAAAAGTAACTTGGAGGATACATCTGGAGCAACCGATGTTGCAACAATTGGGTCCTCAGATGCCAGAAATCCTGAGT ATTATGGAGACGAGCATCTTACTACTACCTCAGATCGGAATATGGCTCACATAACCAACGTGGATGCTGGGGTTTATGAA CATCCTTCCATTTCACAACCTGAGGGTTTAAAACCCGAACCCCCTGAAACTTCTCATGAAAATCAATATTCATTTCCTTC ATCTTCACATGAGTTTACTTATGAAAATGCTCAACAGCCAGATGTGACATATCCTCATTCACAGACAAGCTCGCAGATCC AGAACCTGTCTCCCTTCTCTAGTGTAATGGCATACACTACTTTGCCCAGTGCTCTGTTGGCTTCAACGGTTCAAACAGCA AGGGAGGACAACCCATACTCACCTTTCCCTGCAACTCAATCGATGCCTACGAAATATAGCAACATAGCTTCTTCAATTGG TGGTCCCTCTATAACCATGTCAGAGGCTCTAAGGGCAAACAACATTTCAGCGCCTCAACCTAATCCACAAGCTTTGCCTG GTGCCAATGTTGCCACTGGACCTTCACTTCCTCAACACCTTGCTGTCCATCCCTACGCCCAGCCTACTCTTCCTCCGGGA CATTATCCTAACATGATAAGTTATCCATTTTTGCCTCAGAGCTATACCTACATGCCATCTGCGTTTCAGCAGGCTTTTGC TGGAAGTAGCACATACCACCAATCTTTGGCAGCTGTGCTTCCACAGTACAAAAACAGCATTTCTGTCAGCAGCTTGCCTC AGTCTGCTGCTGTTCCATCTGGATATGGTTTTGGAAGTTCCACCAGCATTCCTGGTGGAAACTATCCTTTAAATCCACCA TCTGCCCCTACTAGCACAACCATTGGATATGATGATGTTATAAGCTCCCAGTACAAGGATGCCAATCACATGATTTCACT ACAGCAGCAGCAGAATGAGAATTCTCCAATGTGGGTTCATGGGCCCGGCTCGCGAACAATGTCTGCAGTTCCTCCCAGCA CCTATTACAGCTTCCAGGGACAGAATCAGCAACCGGCTGGGTTTCGACAAAACCAGCAGCCGTCCCAGCAGCAGCATTTC GGACAACTTGGGTACCCTAATTTCTACCATTCTCAGACTGGGATGTCTCTGGAACATCAGCAACAGCAGCAGCAGCAGAA TGCTAGGGAGTCTCTTGCTGGTTCTCAGAGCCAACAACCTAAGCAGTCCCAACAAATTTGGCAAAACAGCTACTAA
Protein sequence (LotjaGi4g1v0384200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGKVGGAAGHNKASLAGIPPASRKMVQSLKEIVSNIPDNEIYATLKDCNMDPNEAVSRLLSQDPFHEVKSKREKKKESK DTTDSRPRGANNNSSSRGGGGGVRGGADRYAGRGGAAQFNSSDSGLLQGKPASRKENGTPAYGGGSTFFAPNAWDNSASR QVPSYSHSDSAGVSDGVSSSLQHGGVQSAWALNPGQVSMADIVKMGRPQPKAPVHNSAASNHNLNSYQGHASKVSENTND QSFAVNPNVEQNDEWPSIEHQPAVYGSSVVDTHPNTEYYTNSSNFGEANRQLNNHVDEFVPEDSPVENPDNVGSTSVPVQ SVPEDSSESASAFDGSLYKDINSYQSHRHPFDNNEAEDGTSSVAANLEQLNLHNDDQGTEPEEENPSVVIPNHLLLHTPE CLNLSFGSFGAVNDASLSGSGPHASRPLKSNLEDTSGATDVATIGSSDARNPEYYGDEHLTTTSDRNMAHITNVDAGVYE HPSISQPEGLKPEPPETSHENQYSFPSSSHEFTYENAQQPDVTYPHSQTSSQIQNLSPFSSVMAYTTLPSALLASTVQTA REDNPYSPFPATQSMPTKYSNIASSIGGPSITMSEALRANNISAPQPNPQALPGANVATGPSLPQHLAVHPYAQPTLPPG HYPNMISYPFLPQSYTYMPSAFQQAFAGSSTYHQSLAAVLPQYKNSISVSSLPQSAAVPSGYGFGSSTSIPGGNYPLNPP SAPTSTTIGYDDVISSQYKDANHMISLQQQQNENSPMWVHGPGSRTMSAVPPSTYYSFQGQNQQPAGFRQNQQPSQQQHF GQLGYPNFYHSQTGMSLEHQQQQQQQNARESLAGSQSQQPKQSQQIWQNSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 851 | 851 | 0.0 | – | |
| PANTHER | 1 | 851 | 851 | 0.0 | – | |
| SUPERFAMILY | 15 | 81 | 67 | 1.68E-14 | ||
| Pfam | 19 | 78 | 60 | 1.7E-32 | ||
| CDD | 26 | 61 | 36 | 0.00668977 | – | |
| MobiDBLite | 56 | 183 | 128 | - | – | |
| MobiDBLite | 65 | 85 | 21 | - | – | |
| MobiDBLite | 150 | 183 | 34 | - | – | |
| MobiDBLite | 207 | 244 | 38 | - | – | |
| MobiDBLite | 214 | 244 | 31 | - | – | |
| MobiDBLite | 299 | 331 | 33 | - | – | |
| MobiDBLite | 308 | 331 | 24 | - | – | |
| MobiDBLite | 417 | 446 | 30 | - | – | |
| MobiDBLite | 417 | 456 | 40 | - | – | |
| MobiDBLite | 481 | 509 | 29 | - | – | |
| MobiDBLite | 750 | 851 | 102 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0384200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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