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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0386200 |
| Transcript ID | LotjaGi4g1v0386200.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | evolutionarily conserved C-terminal region 2; TAIR: AT3G13460.1 evolutionarily conserved C-terminal region 2; Swiss-Prot: sp|Q0VCZ3|YTHD2_BOVIN YTH domain-containing family protein 2; TrEMBL-Plants: tr|A0A0S3QYW4|A0A0S3QYW4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0386200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76445250..76448245) extracted from Lotus japonicus Gifu genome v1.2.
TCTTCCTTAATTCTTATGGTTTACACAGAAGCATCAGATTTGCTGCAGAAGTTATCGTTGGAAACTCAGGCCAAGCCCTT GGAAATTCCGGAGCCAACCAAGAAGGTAATTTTTTTTGATTATTTGTTGCTGCTTTTGTGGGAAATTCTTGATTGAATTC TTTTGTGATATCGTTGTAGCATTTGGAATACTGCTGAATTGACTGCTGAGAATGGAGTGATATCTATTTATATTTGTAGC TTGTTGTGTGATTTTTCTGTGAATGATATTGAGAGTTTTTGAAATTCTGTGTAGGTCTCTGGGAATCAATATGGAACGGT TGATTCGGGTAATGCTGCTAATGGTCAGATCCCATCATATGAACGGTCTGTAACACCTGTGTTGCAGGATTTTATTGATC CCACCATGTGTTACGTGCCAAATGGTTATGCATCCACTGCTTATTATTATGGTGGTGAGTCTATGGGTGCTTATTATTAT GGTGGTGAGTTTATGGGTGAAAACTGAAAGAAATGACTAATAGTGATTGTTTGGATGTCTTGGTTTAATTTTGTTAGATG GGTATTTGCAACTTTATGCAAGCTGAATTGTTTTGTTTCTTGCAGGTTATGATGGGACTGGTAATGAGTGGGATGATTAC TCTAGATATGTGAATCAGGAAGGACTTGACATGACTTCTGTGAGTATTTTTCCCTCATTTTTTCCATTTTGTCCCTTTTG ATATTTAAACCCTTAGCTAAATTTGTTTCACTCACCTAACATTTTGACAGGGAGTTTATGGTGATAATGGGTCTCTTTTG TATCACCATGGATATGGGTATGCACCCTACGGTCCTTATTCACCAGCAGGGTCCCCAGTTCCAACCATGGGGAATGATGG TCAGTTGTATGGGCCTCAACACTACCAGTATCCTCCCTATTTCCAGCCACTGACTCCAACCAGTGCGCCATTCACACCAA CTTCAGTCCTTCCTCAAGGCGAGATTTCAACCTCTGTAGCTGCTGATCAAAAGCCTCTTCCTGTGGATGCAGCTAATGGA AACTCCAATACTGTCCCTAGTGGTGGTAGTCCAAAAGGTAATAATGATGCAGCTCATGTCAATCATCTGATATATCAGTA TTCATCTTATACTCCCAGTGCTTCATACCAAAGTATTACTGTGCCAGGTCGCGGCCCTGCTTCTGGTTATCAGGATCCAA GATTTGGTTTTGATGGAGCTCGTTCACCTAACCCATGGCTAGATGCCCCACTATTTTCAGACGGGCAGCTTAGACCTGTG AGTAGCACAACCAACACCTCTTCAATATCAGGTGGCAACAATACTGCTTCAAGGAACCAGTCTTACCGCCCAAATTCTCA ATTTATGGTAAGCAGTGTTTTGTTTAGTACATGTGATTCTGTTATATATCATGGCTTGAGCGCAGGAGGGTTTATTGCTT GTTCTACCAATTGTATATCTTTCTTTTTGTAGCAAACTGTCTAGTCGTATATCTGGATTGGTTTTATAAATATTTATTCA TAATTTGTGATCTTTGTTATTTGTGTTTCTCTGCTAGGGCTTGCATCATCCGAGACCAATGCCTGCCATGGGTGCAACAC ATGGCTTCATTAACCGGATGTATCCGAACAAATTATATGGTCAGTATGGAAACACTGTCAGGTCTGGAATGGGTTATGGA ACACAGTATGATTCTCGCTCAAATGGACGGGCATGGCTAGCTGTTGACAACAAATACAAAACCAGGGGAAGAAGTGGTGG TTACTTTGGCTATGGCAATGAGAATGCTGATGGTTTGAATGAGCTGAACAGGGGACCTAGGGCCAAGGGTGGTAAGAACC AAAAGGGTTTTGCACCAACTATTCTGGCAGTCAAAGGGCAAAATTTGCCTGCAAATCTGACCACAGAAGAGGAGAAAGAC AAGACCAGTAATATTCCAGACCGTGAACAATATAACAAGGCTGATTTCTCTGAAGAATACACTGATGCCAAATTTTTTGT CATCAAGTCTTATAGCGAGGATGATATCCATAAAAGCATCAAGTATAACGTTTGGGCAAGCACACAAAATGGTAACAAAA AGCTTGATGCTGCATATCAGGAGGCCCAGCAGAAACCTGGTGGCTGCCCTGTCTTCCTGTTCTTCTCGGTGAGTATCGGT GTGCTATGGTCGAACAGTGTCCATTGTTGATCTGTTCTTTTGTCTCATTTGTTAAATTCATGTGCAGGTTAATACCAGTG GACAATTTGTTGGGCTTGCTGAGATGACTGGTCCAGTTGATTTTAACAAGAGTCTGGAGTATTGGCAGCAGGACAAGTGG AATGGTTGTTTCCCTCTGAAGTGGCACATTGTGAAGGATGTTCCCAACAATTTGTTGAGGCACATTACCTTGGACAACAA TGAGAACAAACCTGTCACCAACAGTAGGGATACACAAGAGGTAAATAAGTTCTGCTCTTGTATTTTTGTGTCTACTTGTA ATCTTGTGCTTTCATTTGATCAACAAAGTTTATGTTTGCAGATAATGCTGGAGCCAGGTCTGAAATTGGTCAAAATTTTC AAGGAATATAGCAGCAAGACATGCATTCTGGATGATTTTGGATTCTATGAGGCTCGTCAGAAGACAATCTTGGAGAAGAA AGCAAAGCAACAATTCCCAAAGCAGGCAAGACATCTTTTGATTCATTCTATAGTTTTGAAGATCATTTCAAAATTGATCT GTGCTTACCGTTTGTTGTCATCTTAATTTATTGATGCAGGTTTGGGAAGGGAAACCTACTGAGGAGAAGATAGAGGTCAA CGGGGAGGTTAATGCTCCAAAATCTGAAGTTACCTCGGAATTGCTGAAGGAGTCTACCCTGTCTGAGAAGGATAGTGAGG ATCCCAAACTCTTGGACAATGGAACTGTGGCAAAACCTGGAGATGCCCCAAAGGGTGCTAAACCAGTTGTATCTGAGAGT AAGATTGTAGTCAATGGTGTTGCTAATGGTTGCTAA
CDS sequence (LotjaGi4g1v0386200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTACACAGAAGCATCAGATTTGCTGCAGAAGTTATCGTTGGAAACTCAGGCCAAGCCCTTGGAAATTCCGGAGCC AACCAAGAAGGTCTCTGGGAATCAATATGGAACGGTTGATTCGGGTAATGCTGCTAATGGTCAGATCCCATCATATGAAC GGTCTGTAACACCTGTGTTGCAGGATTTTATTGATCCCACCATGTGTTACGTGCCAAATGGTTATGCATCCACTGCTTAT TATTATGGTGGTTATGATGGGACTGGTAATGAGTGGGATGATTACTCTAGATATGTGAATCAGGAAGGACTTGACATGAC TTCTGGAGTTTATGGTGATAATGGGTCTCTTTTGTATCACCATGGATATGGGTATGCACCCTACGGTCCTTATTCACCAG CAGGGTCCCCAGTTCCAACCATGGGGAATGATGGTCAGTTGTATGGGCCTCAACACTACCAGTATCCTCCCTATTTCCAG CCACTGACTCCAACCAGTGCGCCATTCACACCAACTTCAGTCCTTCCTCAAGGCGAGATTTCAACCTCTGTAGCTGCTGA TCAAAAGCCTCTTCCTGTGGATGCAGCTAATGGAAACTCCAATACTGTCCCTAGTGGTGGTAGTCCAAAAGGTCGCGGCC CTGCTTCTGGTTATCAGGATCCAAGATTTGGTTTTGATGGAGCTCGTTCACCTAACCCATGGCTAGATGCCCCACTATTT TCAGACGGGCAGCTTAGACCTGTGAGTAGCACAACCAACACCTCTTCAATATCAGGTGGCAACAATACTGCTTCAAGGAA CCAGTCTTACCGCCCAAATTCTCAATTTATGGGCTTGCATCATCCGAGACCAATGCCTGCCATGGGTGCAACACATGGCT TCATTAACCGGATGTATCCGAACAAATTATATGGTCAGTATGGAAACACTGTCAGGTCTGGAATGGGTTATGGAACACAG TATGATTCTCGCTCAAATGGACGGGCATGGCTAGCTGTTGACAACAAATACAAAACCAGGGGAAGAAGTGGTGGTTACTT TGGCTATGGCAATGAGAATGCTGATGGTTTGAATGAGCTGAACAGGGGACCTAGGGCCAAGGGTGGTAAGAACCAAAAGG GTTTTGCACCAACTATTCTGGCAGTCAAAGGGCAAAATTTGCCTGCAAATCTGACCACAGAAGAGGAGAAAGACAAGACC AGTAATATTCCAGACCGTGAACAATATAACAAGGCTGATTTCTCTGAAGAATACACTGATGCCAAATTTTTTGTCATCAA GTCTTATAGCGAGGATGATATCCATAAAAGCATCAAGTATAACGTTTGGGCAAGCACACAAAATGGTAACAAAAAGCTTG ATGCTGCATATCAGGAGGCCCAGCAGAAACCTGGTGGCTGCCCTGTCTTCCTGTTCTTCTCGGTTAATACCAGTGGACAA TTTGTTGGGCTTGCTGAGATGACTGGTCCAGTTGATTTTAACAAGAGTCTGGAGTATTGGCAGCAGGACAAGTGGAATGG TTGTTTCCCTCTGAAGTGGCACATTGTGAAGGATGTTCCCAACAATTTGTTGAGGCACATTACCTTGGACAACAATGAGA ACAAACCTGTCACCAACAGTAGGGATACACAAGAGATAATGCTGGAGCCAGGTCTGAAATTGGTCAAAATTTTCAAGGAA TATAGCAGCAAGACATGCATTCTGGATGATTTTGGATTCTATGAGGCTCGTCAGAAGACAATCTTGGAGAAGAAAGCAAA GCAACAATTCCCAAAGCAGGCAAGACATCTTTTGATTCATTCTGTTTGGGAAGGGAAACCTACTGAGGAGAAGATAGAGG TCAACGGGGAGGTTAATGCTCCAAAATCTGAAGTTACCTCGGAATTGCTGAAGGAGTCTACCCTGTCTGAGAAGGATAGT GAGGATCCCAAACTCTTGGACAATGGAACTGTGGCAAAACCTGGAGATGCCCCAAAGGGTGCTAAACCAGTTGTATCTGA GAGTAAGATTGTAGTCAATGGTGTTGCTAATGGTTGCTAA
Protein sequence (LotjaGi4g1v0386200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVYTEASDLLQKLSLETQAKPLEIPEPTKKVSGNQYGTVDSGNAANGQIPSYERSVTPVLQDFIDPTMCYVPNGYASTAY YYGGYDGTGNEWDDYSRYVNQEGLDMTSGVYGDNGSLLYHHGYGYAPYGPYSPAGSPVPTMGNDGQLYGPQHYQYPPYFQ PLTPTSAPFTPTSVLPQGEISTSVAADQKPLPVDAANGNSNTVPSGGSPKGRGPASGYQDPRFGFDGARSPNPWLDAPLF SDGQLRPVSSTTNTSSISGGNNTASRNQSYRPNSQFMGLHHPRPMPAMGATHGFINRMYPNKLYGQYGNTVRSGMGYGTQ YDSRSNGRAWLAVDNKYKTRGRSGGYFGYGNENADGLNELNRGPRAKGGKNQKGFAPTILAVKGQNLPANLTTEEEKDKT SNIPDREQYNKADFSEEYTDAKFFVIKSYSEDDIHKSIKYNVWASTQNGNKKLDAAYQEAQQKPGGCPVFLFFSVNTSGQ FVGLAEMTGPVDFNKSLEYWQQDKWNGCFPLKWHIVKDVPNNLLRHITLDNNENKPVTNSRDTQEIMLEPGLKLVKIFKE YSSKTCILDDFGFYEARQKTILEKKAKQQFPKQARHLLIHSVWEGKPTEEKIEVNGEVNAPKSEVTSELLKESTLSEKDS EDPKLLDNGTVAKPGDAPKGAKPVVSESKIVVNGVANGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 609 | 594 | 2.8E-244 | – | |
| PANTHER | 16 | 609 | 594 | 2.8E-244 | – | |
| MobiDBLite | 190 | 278 | 89 | - | – | |
| MobiDBLite | 244 | 275 | 32 | - | – | |
| MobiDBLite | 386 | 411 | 26 | - | – | |
| MobiDBLite | 392 | 411 | 20 | - | – | |
| Gene3D | 397 | 572 | 176 | 9.7E-70 | – | |
| ProSiteProfiles | 421 | 558 | 138 | 50.417 | ||
| Pfam | 422 | 559 | 138 | 1.2E-39 | ||
| MobiDBLite | 623 | 664 | 42 | - | – | |
| MobiDBLite | 631 | 646 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi4g1v0386200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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