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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0386200 |
Transcript ID | LotjaGi4g1v0386200.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | evolutionarily conserved C-terminal region 2; TAIR: AT3G13460.1 evolutionarily conserved C-terminal region 2; Swiss-Prot: sp|Q0VCZ3|YTHD2_BOVIN YTH domain-containing family protein 2; TrEMBL-Plants: tr|A0A0S3QYW4|A0A0S3QYW4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0386200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76445250..76448245) extracted from Lotus japonicus Gifu genome v1.2.
TCTTCCTTAATTCTTATGGTTTACACAGAAGCATCAGATTTGCTGCAGAAGTTATCGTTGGAAACTCAGGCCAAGCCCTT GGAAATTCCGGAGCCAACCAAGAAGGTAATTTTTTTTGATTATTTGTTGCTGCTTTTGTGGGAAATTCTTGATTGAATTC TTTTGTGATATCGTTGTAGCATTTGGAATACTGCTGAATTGACTGCTGAGAATGGAGTGATATCTATTTATATTTGTAGC TTGTTGTGTGATTTTTCTGTGAATGATATTGAGAGTTTTTGAAATTCTGTGTAGGTCTCTGGGAATCAATATGGAACGGT TGATTCGGGTAATGCTGCTAATGGTCAGATCCCATCATATGAACGGTCTGTAACACCTGTGTTGCAGGATTTTATTGATC CCACCATGTGTTACGTGCCAAATGGTTATGCATCCACTGCTTATTATTATGGTGGTGAGTCTATGGGTGCTTATTATTAT GGTGGTGAGTTTATGGGTGAAAACTGAAAGAAATGACTAATAGTGATTGTTTGGATGTCTTGGTTTAATTTTGTTAGATG GGTATTTGCAACTTTATGCAAGCTGAATTGTTTTGTTTCTTGCAGGTTATGATGGGACTGGTAATGAGTGGGATGATTAC TCTAGATATGTGAATCAGGAAGGACTTGACATGACTTCTGTGAGTATTTTTCCCTCATTTTTTCCATTTTGTCCCTTTTG ATATTTAAACCCTTAGCTAAATTTGTTTCACTCACCTAACATTTTGACAGGGAGTTTATGGTGATAATGGGTCTCTTTTG TATCACCATGGATATGGGTATGCACCCTACGGTCCTTATTCACCAGCAGGGTCCCCAGTTCCAACCATGGGGAATGATGG TCAGTTGTATGGGCCTCAACACTACCAGTATCCTCCCTATTTCCAGCCACTGACTCCAACCAGTGCGCCATTCACACCAA CTTCAGTCCTTCCTCAAGGCGAGATTTCAACCTCTGTAGCTGCTGATCAAAAGCCTCTTCCTGTGGATGCAGCTAATGGA AACTCCAATACTGTCCCTAGTGGTGGTAGTCCAAAAGGTAATAATGATGCAGCTCATGTCAATCATCTGATATATCAGTA TTCATCTTATACTCCCAGTGCTTCATACCAAAGTATTACTGTGCCAGGTCGCGGCCCTGCTTCTGGTTATCAGGATCCAA GATTTGGTTTTGATGGAGCTCGTTCACCTAACCCATGGCTAGATGCCCCACTATTTTCAGACGGGCAGCTTAGACCTGTG AGTAGCACAACCAACACCTCTTCAATATCAGGTGGCAACAATACTGCTTCAAGGAACCAGTCTTACCGCCCAAATTCTCA ATTTATGGTAAGCAGTGTTTTGTTTAGTACATGTGATTCTGTTATATATCATGGCTTGAGCGCAGGAGGGTTTATTGCTT GTTCTACCAATTGTATATCTTTCTTTTTGTAGCAAACTGTCTAGTCGTATATCTGGATTGGTTTTATAAATATTTATTCA TAATTTGTGATCTTTGTTATTTGTGTTTCTCTGCTAGGGCTTGCATCATCCGAGACCAATGCCTGCCATGGGTGCAACAC ATGGCTTCATTAACCGGATGTATCCGAACAAATTATATGGTCAGTATGGAAACACTGTCAGGTCTGGAATGGGTTATGGA ACACAGTATGATTCTCGCTCAAATGGACGGGCATGGCTAGCTGTTGACAACAAATACAAAACCAGGGGAAGAAGTGGTGG TTACTTTGGCTATGGCAATGAGAATGCTGATGGTTTGAATGAGCTGAACAGGGGACCTAGGGCCAAGGGTGGTAAGAACC AAAAGGGTTTTGCACCAACTATTCTGGCAGTCAAAGGGCAAAATTTGCCTGCAAATCTGACCACAGAAGAGGAGAAAGAC AAGACCAGTAATATTCCAGACCGTGAACAATATAACAAGGCTGATTTCTCTGAAGAATACACTGATGCCAAATTTTTTGT CATCAAGTCTTATAGCGAGGATGATATCCATAAAAGCATCAAGTATAACGTTTGGGCAAGCACACAAAATGGTAACAAAA AGCTTGATGCTGCATATCAGGAGGCCCAGCAGAAACCTGGTGGCTGCCCTGTCTTCCTGTTCTTCTCGGTGAGTATCGGT GTGCTATGGTCGAACAGTGTCCATTGTTGATCTGTTCTTTTGTCTCATTTGTTAAATTCATGTGCAGGTTAATACCAGTG GACAATTTGTTGGGCTTGCTGAGATGACTGGTCCAGTTGATTTTAACAAGAGTCTGGAGTATTGGCAGCAGGACAAGTGG AATGGTTGTTTCCCTCTGAAGTGGCACATTGTGAAGGATGTTCCCAACAATTTGTTGAGGCACATTACCTTGGACAACAA TGAGAACAAACCTGTCACCAACAGTAGGGATACACAAGAGGTAAATAAGTTCTGCTCTTGTATTTTTGTGTCTACTTGTA ATCTTGTGCTTTCATTTGATCAACAAAGTTTATGTTTGCAGATAATGCTGGAGCCAGGTCTGAAATTGGTCAAAATTTTC AAGGAATATAGCAGCAAGACATGCATTCTGGATGATTTTGGATTCTATGAGGCTCGTCAGAAGACAATCTTGGAGAAGAA AGCAAAGCAACAATTCCCAAAGCAGGCAAGACATCTTTTGATTCATTCTATAGTTTTGAAGATCATTTCAAAATTGATCT GTGCTTACCGTTTGTTGTCATCTTAATTTATTGATGCAGGTTTGGGAAGGGAAACCTACTGAGGAGAAGATAGAGGTCAA CGGGGAGGTTAATGCTCCAAAATCTGAAGTTACCTCGGAATTGCTGAAGGAGTCTACCCTGTCTGAGAAGGATAGTGAGG ATCCCAAACTCTTGGACAATGGAACTGTGGCAAAACCTGGAGATGCCCCAAAGGGTGCTAAACCAGTTGTATCTGAGAGT AAGATTGTAGTCAATGGTGTTGCTAATGGTTGCTAA
CDS sequence (LotjaGi4g1v0386200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTACACAGAAGCATCAGATTTGCTGCAGAAGTTATCGTTGGAAACTCAGGCCAAGCCCTTGGAAATTCCGGAGCC AACCAAGAAGGTCTCTGGGAATCAATATGGAACGGTTGATTCGGGTAATGCTGCTAATGGTCAGATCCCATCATATGAAC GGTCTGTAACACCTGTGTTGCAGGATTTTATTGATCCCACCATGTGTTACGTGCCAAATGGTTATGCATCCACTGCTTAT TATTATGGTGGTTATGATGGGACTGGTAATGAGTGGGATGATTACTCTAGATATGTGAATCAGGAAGGACTTGACATGAC TTCTGGAGTTTATGGTGATAATGGGTCTCTTTTGTATCACCATGGATATGGGTATGCACCCTACGGTCCTTATTCACCAG CAGGGTCCCCAGTTCCAACCATGGGGAATGATGGTCAGTTGTATGGGCCTCAACACTACCAGTATCCTCCCTATTTCCAG CCACTGACTCCAACCAGTGCGCCATTCACACCAACTTCAGTCCTTCCTCAAGGCGAGATTTCAACCTCTGTAGCTGCTGA TCAAAAGCCTCTTCCTGTGGATGCAGCTAATGGAAACTCCAATACTGTCCCTAGTGGTGGTAGTCCAAAAGGTCGCGGCC CTGCTTCTGGTTATCAGGATCCAAGATTTGGTTTTGATGGAGCTCGTTCACCTAACCCATGGCTAGATGCCCCACTATTT TCAGACGGGCAGCTTAGACCTGTGAGTAGCACAACCAACACCTCTTCAATATCAGGTGGCAACAATACTGCTTCAAGGAA CCAGTCTTACCGCCCAAATTCTCAATTTATGGGCTTGCATCATCCGAGACCAATGCCTGCCATGGGTGCAACACATGGCT TCATTAACCGGATGTATCCGAACAAATTATATGGTCAGTATGGAAACACTGTCAGGTCTGGAATGGGTTATGGAACACAG TATGATTCTCGCTCAAATGGACGGGCATGGCTAGCTGTTGACAACAAATACAAAACCAGGGGAAGAAGTGGTGGTTACTT TGGCTATGGCAATGAGAATGCTGATGGTTTGAATGAGCTGAACAGGGGACCTAGGGCCAAGGGTGGTAAGAACCAAAAGG GTTTTGCACCAACTATTCTGGCAGTCAAAGGGCAAAATTTGCCTGCAAATCTGACCACAGAAGAGGAGAAAGACAAGACC AGTAATATTCCAGACCGTGAACAATATAACAAGGCTGATTTCTCTGAAGAATACACTGATGCCAAATTTTTTGTCATCAA GTCTTATAGCGAGGATGATATCCATAAAAGCATCAAGTATAACGTTTGGGCAAGCACACAAAATGGTAACAAAAAGCTTG ATGCTGCATATCAGGAGGCCCAGCAGAAACCTGGTGGCTGCCCTGTCTTCCTGTTCTTCTCGGTTAATACCAGTGGACAA TTTGTTGGGCTTGCTGAGATGACTGGTCCAGTTGATTTTAACAAGAGTCTGGAGTATTGGCAGCAGGACAAGTGGAATGG TTGTTTCCCTCTGAAGTGGCACATTGTGAAGGATGTTCCCAACAATTTGTTGAGGCACATTACCTTGGACAACAATGAGA ACAAACCTGTCACCAACAGTAGGGATACACAAGAGATAATGCTGGAGCCAGGTCTGAAATTGGTCAAAATTTTCAAGGAA TATAGCAGCAAGACATGCATTCTGGATGATTTTGGATTCTATGAGGCTCGTCAGAAGACAATCTTGGAGAAGAAAGCAAA GCAACAATTCCCAAAGCAGGTTTGGGAAGGGAAACCTACTGAGGAGAAGATAGAGGTCAACGGGGAGGTTAATGCTCCAA AATCTGAAGTTACCTCGGAATTGCTGAAGGAGTCTACCCTGTCTGAGAAGGATAGTGAGGATCCCAAACTCTTGGACAAT GGAACTGTGGCAAAACCTGGAGATGCCCCAAAGGGTGCTAAACCAGTTGTATCTGAGAGTAAGATTGTAGTCAATGGTGT TGCTAATGGTTGCTAA
Protein sequence (LotjaGi4g1v0386200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVYTEASDLLQKLSLETQAKPLEIPEPTKKVSGNQYGTVDSGNAANGQIPSYERSVTPVLQDFIDPTMCYVPNGYASTAY YYGGYDGTGNEWDDYSRYVNQEGLDMTSGVYGDNGSLLYHHGYGYAPYGPYSPAGSPVPTMGNDGQLYGPQHYQYPPYFQ PLTPTSAPFTPTSVLPQGEISTSVAADQKPLPVDAANGNSNTVPSGGSPKGRGPASGYQDPRFGFDGARSPNPWLDAPLF SDGQLRPVSSTTNTSSISGGNNTASRNQSYRPNSQFMGLHHPRPMPAMGATHGFINRMYPNKLYGQYGNTVRSGMGYGTQ YDSRSNGRAWLAVDNKYKTRGRSGGYFGYGNENADGLNELNRGPRAKGGKNQKGFAPTILAVKGQNLPANLTTEEEKDKT SNIPDREQYNKADFSEEYTDAKFFVIKSYSEDDIHKSIKYNVWASTQNGNKKLDAAYQEAQQKPGGCPVFLFFSVNTSGQ FVGLAEMTGPVDFNKSLEYWQQDKWNGCFPLKWHIVKDVPNNLLRHITLDNNENKPVTNSRDTQEIMLEPGLKLVKIFKE YSSKTCILDDFGFYEARQKTILEKKAKQQFPKQVWEGKPTEEKIEVNGEVNAPKSEVTSELLKESTLSEKDSEDPKLLDN GTVAKPGDAPKGAKPVVSESKIVVNGVANGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 16 | 614 | 599 | 1.8E-244 | – | |
PANTHER | 16 | 614 | 599 | 1.8E-244 | – | |
MobiDBLite | 190 | 278 | 89 | - | – | |
MobiDBLite | 244 | 275 | 32 | - | – | |
MobiDBLite | 386 | 411 | 26 | - | – | |
MobiDBLite | 392 | 411 | 20 | - | – | |
Gene3D | 397 | 572 | 176 | 9.5E-70 | – | |
ProSiteProfiles | 421 | 558 | 138 | 50.417 | ||
Pfam | 422 | 559 | 138 | 1.2E-39 | ||
MobiDBLite | 611 | 656 | 46 | - | – | |
MobiDBLite | 623 | 638 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi4g1v0386200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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