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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0390400 |
| Transcript ID | LotjaGi4g1v0390400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein root primordium defective 1; TAIR: AT5G48040.1 Ubiquitin carboxyl-terminal hydrolase family protein; Swiss-Prot: sp|Q689D6|RPD1_ARATH Protein ROOT PRIMORDIUM DEFECTIVE 1; TrEMBL-Plants: tr|A0A0B2SUB1|A0A0B2SUB1_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0390400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76912882..76916155) extracted from Lotus japonicus Gifu genome v1.2.
GACTTACCTCTAGCTATCAACGCTGATCTTGATAAAGTGTTATCCTCACTTTTCATGATTATTTCTTCATAAATAATTTT ATAGCAACTTCTTCAAAACTCAAAGTTTTCTTGCTATACATCAAAGTTGGATTGATGTGCTCATAGGAAAACGAAAAATA TCATATAAGTCTCAATGCATTAATTAATTTATCTTCATCCTCAATCTAAACATCACGTCACATCAGCTGCCTACATGTCC AAAACAACCCATAAGTTGTTTTTTAATATATATTTTTTTAGATATTTTTAAACAAACCTAAATCCTAACGAAACAGAGAC GAGAGCAAACCCAATCCAATCCTCGTACCGATGAAGCAGCTGACAACAGTGATGGTGTAGCACATGGGCAGTGTGATTCT CCAATCTTTGAGTTCAAGCTCCCAATGATTCTCAGTTAGTTTCAGGTACCTTCATTTTTTATCTTAATTGCGATGCTTTT CCTTTTGATTTGATGCTAAAGCTATTCGTGCTAGCTTCAATGCTTCCTTTCTATCACTACATAGTGTAAAGAAGCTCATT TTCGTTCTTCGTTTATCAATAATCATGTCCTGCTCATTTACATTTTGTGGAATATGAAAAATTATGATTGTATATTTAAC ATAGAAATTTTCTGCCATTGTAGTTTAAATTCTCAGTTTTGATTGCAGTAGTCATCGTTTATTTCTGTATACAAGTACAA GAATTTTGACATGTTCTGTTTTATAAAGAAAATAAGATGGCATTCACTTATATGATGTTATAAGGTTGATTGTGATGATG GGAGGAATAGTTTGTTTTTGAAATTCAATGGTACCTTGATGATTAGCTCATAATTCTGTGATTACATTTGTGGTCCTGGG ATATTGCTTTTAGATCTGATTTTGTATTGAGTAAGGGGAGAATGTTTCTTACTTTGATTAAATTTTCTTGAAACCACATC TGATATCTGCAGTAGCATTTTTTGAAGCAAAGTGTGGATTCTGGTACCTACAAGGACAAAAGGGCATCAACCTGTGCTGG TTATGCGATCCATAACTATTTTGTGTGATGTTTCGTTGGTTATTTGGAACTGCGAGAAATTGCGGGTTCCTTCATGGTTG TCAACAAGAATACATTTACCAGCAGAAGTTTAGTCTGGTGAACATAAAGTTGAAATGGGTGAAAGATAGGACACTGGATG CTGCTGTTGCTGGTGAGAGGGATCTTAAGGCAGCTGGAATCCTTGTTTCACTCATTTATTCTTCTTCTGAATGCTGCGTT CCCATATACCATCTTTCTCGACATCGCGGACAACTTGGTCTTCCCCATGACCTTAAGCTCTCCACTTTTATCAGAAGGTA TCCTAATATTTTTACTGAGTCCTTTTTTCATGATAGTGGAGGCACTCCTGTCCCGTGTTTCGGCTTGAGTCCTGAAGCGT TGAAGCTCCACCGTGAGGAAGTCAGCATACTTGAGCAAAATCGGTTGGAACTCAGGGACAGGCTATGCAAATTGCTCATG CTCACAAGAGATAGGATCCTTCCACTGCAAACCATTGACCAGTTGAAATGGGACTTGGGTTTACCGTATGATTACCAGCA TTCTTTTGTTCCGAATCACCCCGAAAGGTTCTCTTTCGTTCGGCTCCCTGATGATCGTGCTGGCTTGAAATTGTTATTTT GGGATGACGAGCTTGCCATCTCAGAGTTACAGAAGAATATTTCTCTGCAACAAAATGAAGAAGACATAAAAAACGGATCC TTAGCATTTCCAGTTAGTTTCACAAGGGGTTTTGGTTTGAAGAGAAAGTGCATGGAGTGGTTGAAAGAGTGGCAGAAACT TCCCTATACTTCGCCTTACACCAATGCATCGCATTTGGATCCTCGTACTGATGTATCTGAGAAGAGGGTCGTTGGAGTCT TTCATGAGCTCCTTCACCTCACACTTCATAAGCAAACCGAGCGTAAGAATGTTAGCAACTTACGTACACCCTTGGCCCTT CCTCAGAAGTTCACTAAAGCGTTCGAGCGTCATCCTGGTATTTTTTACATATCCAGGAAGAGTGACACCCAAACAGTTGT TCTAAGGGAGGCCTTCAATGGTCGGGAACTAATGCAGAAACATCCTCTTGTGAAAATTAGAGAGGAATTTGCAAGTCTAC TGAAGAAAGGGCTACTCGATCGGAGTAGGGGCGTGTACAAAAAACGCATAGATGCTAATTGCGTGGAGGGAGCGAGAAAG GAAGTTCGCATCACTCAAAATACTAGCCAGCTTAATTCTGATGATGAATTAGATTCTATGTTTTCTGAATATGATTCAGA TGATGACCCTCTACATAACCCTAGCTGATGTATCCCAATGTTGATTCTCCTTGCTTGCCATTGTGTTGTTGTGGTTTGGC TTAGTGAGATTCTCGAAATCTGGCCTTGATGGGATGCTTTCATCACACCGTGCGCCAACTTCGTCCACTTAACTTGTGAA GATCTGTCAGCAGCCAAATATATCAACAGTGTTATTATCTTAGCGAGGGAGAGCATATTGTGTTAAGATAAGATTCTGGA ATGAGGGTGCCAGCTCAATCTGGTTAGAAGATTAGTGGCATGGTTAAGATGGACGCAGGTACATGTACAGCTACAATTTA ATTTCACTGCAAGAAAGTTTTGTTAAAATGCCTAAAACGAACTTTGTAGAAATTGAAATTTTGATCTAAAAACTGAATAG ATGCCTATAAGAGCATTCTTTTGCAAGCTGATATACTTTTTCCAGGGATTTATGAGATGTTGTTTTAACATAATCTCTTT ATTTTATGATTAGGATGAACTTTCCATTATGTCCAAGCTGAATTCACACTTTTATATTGATATGAACAGATCTCCAAGTT GCAAACATCCCTGACTGGGGTGAGACAAAGCTCTATGCCGCTTAGTTTTGCCATGACGTGTGAGGATACTTGCTTTTTCT GTTATGAGAAGAAAAATTAGGATCTTACCAAGCCAGAAAAGTTATGGTGCCCTCATAACATGATCATTGAGATTGGATGT GAACAGGCACAGCATTGCAACTATCTTACATTTTTATGTATTGGAAACCAAACGAGTTCTTGAACGTTAACGAGGGAGGT TTTAAGTTTTAAGATCTAACTACAATTAAGTGGGAGTTATGCATGTGTTGAGAGAGCATTGAAGTTATGTACTTTTGTCT TCTTATTGTTTCCAACAGAAACATAATACTTCAGCAAAAGATTTTATAAACGAGAAAATGCTAGTTTTTAAAAA
CDS sequence (LotjaGi4g1v0390400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCGTTGGTTATTTGGAACTGCGAGAAATTGCGGGTTCCTTCATGGTTGTCAACAAGAATACATTTACCAGCAGAA GTTTAGTCTGGTGAACATAAAGTTGAAATGGGTGAAAGATAGGACACTGGATGCTGCTGTTGCTGGTGAGAGGGATCTTA AGGCAGCTGGAATCCTTGTTTCACTCATTTATTCTTCTTCTGAATGCTGCGTTCCCATATACCATCTTTCTCGACATCGC GGACAACTTGGTCTTCCCCATGACCTTAAGCTCTCCACTTTTATCAGAAGGTATCCTAATATTTTTACTGAGTCCTTTTT TCATGATAGTGGAGGCACTCCTGTCCCGTGTTTCGGCTTGAGTCCTGAAGCGTTGAAGCTCCACCGTGAGGAAGTCAGCA TACTTGAGCAAAATCGGTTGGAACTCAGGGACAGGCTATGCAAATTGCTCATGCTCACAAGAGATAGGATCCTTCCACTG CAAACCATTGACCAGTTGAAATGGGACTTGGGTTTACCGTATGATTACCAGCATTCTTTTGTTCCGAATCACCCCGAAAG GTTCTCTTTCGTTCGGCTCCCTGATGATCGTGCTGGCTTGAAATTGTTATTTTGGGATGACGAGCTTGCCATCTCAGAGT TACAGAAGAATATTTCTCTGCAACAAAATGAAGAAGACATAAAAAACGGATCCTTAGCATTTCCAGTTAGTTTCACAAGG GGTTTTGGTTTGAAGAGAAAGTGCATGGAGTGGTTGAAAGAGTGGCAGAAACTTCCCTATACTTCGCCTTACACCAATGC ATCGCATTTGGATCCTCGTACTGATGTATCTGAGAAGAGGGTCGTTGGAGTCTTTCATGAGCTCCTTCACCTCACACTTC ATAAGCAAACCGAGCGTAAGAATGTTAGCAACTTACGTACACCCTTGGCCCTTCCTCAGAAGTTCACTAAAGCGTTCGAG CGTCATCCTGGTATTTTTTACATATCCAGGAAGAGTGACACCCAAACAGTTGTTCTAAGGGAGGCCTTCAATGGTCGGGA ACTAATGCAGAAACATCCTCTTGTGAAAATTAGAGAGGAATTTGCAAGTCTACTGAAGAAAGGGCTACTCGATCGGAGTA GGGGCGTGTACAAAAAACGCATAGATGCTAATTGCGTGGAGGGAGCGAGAAAGGAAGTTCGCATCACTCAAAATACTAGC CAGCTTAATTCTGATGATGAATTAGATTCTATGTTTTCTGAATATGATTCAGATGATGACCCTCTACATAACCCTAGCTG A
Protein sequence (LotjaGi4g1v0390400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFRWLFGTARNCGFLHGCQQEYIYQQKFSLVNIKLKWVKDRTLDAAVAGERDLKAAGILVSLIYSSSECCVPIYHLSRHR GQLGLPHDLKLSTFIRRYPNIFTESFFHDSGGTPVPCFGLSPEALKLHREEVSILEQNRLELRDRLCKLLMLTRDRILPL QTIDQLKWDLGLPYDYQHSFVPNHPERFSFVRLPDDRAGLKLLFWDDELAISELQKNISLQQNEEDIKNGSLAFPVSFTR GFGLKRKCMEWLKEWQKLPYTSPYTNASHLDPRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRTPLALPQKFTKAFE RHPGIFYISRKSDTQTVVLREAFNGRELMQKHPLVKIREEFASLLKKGLLDRSRGVYKKRIDANCVEGARKEVRITQNTS QLNSDDELDSMFSEYDSDDDPLHNPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 397 | 385 | 1.9E-206 | – | |
| PANTHER | 13 | 397 | 385 | 1.9E-206 | – | |
| Pfam | 38 | 368 | 331 | 2.6E-118 | ||
| Coils | 125 | 145 | 21 | - | – | |
| MobiDBLite | 399 | 426 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0390400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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