Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0393800.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0393800
Transcript ID	LotjaGi4g1v0393800.1
Lotus japonicus genome version	Gifu v1.2
Description	Protein mizu-kussei 1; TAIR: AT5G65340.1 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617); Swiss-Prot: sp\|O22227\|MIZ1_ARATH Protein MIZU-KUSSEI 1; TrEMBL-Plants: tr\|I1K4G3\|I1K4G3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0393800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:77219623..77220625) extracted from Lotus japonicus Gifu genome v1.2.

TGAAACTTTATGACTTGATGGGGTGGCTATACATCATCTATAAATAAGTATAAACAAACCCTATATACCGTACACCAGTT AGCTAGAGTGCAAGCACATGGCCACTGGAGTAACAACAGTGGACTGCCACAAACAAGTTCGATCATGGAGGCTGCTACGT TCTCTCATGCAACTTCTAATCCCCACTTGCAACTGTGCCACCATCATCAAAGACGACCACGATTATGCAATATCAGAAAA ATACCTCCATAACTCCAACAAGCACTCTTCATCATCACTCACCACCTCCACCACCATCACCGGCACAATATTCGGATACC GCAGAGGAAAAATCAACTTCTGCATCCAAGAAAACGCCAACTCCACCACCAACCCAATTCTCCTCCTAGAACTCGCAGTT CCAACAAGCACTTTGGCCAAGGAAATGAGAGGAGGAACACTCAGAATCACGTTAGAGAGCAGCAATACTGATGAAAGAAA TTACCCTGCAAAATCACTTTTGTCCACTCCTCTATGGACCATGTACTGCAATGGAAGAAAAGTGGGTTATGCGGTTAAGC GCAGGCCTTCGAAAACCGATATTGAAGCGCTGAGGTTGATGCGTTCGGTGGTTGTGGGAACTGGCGTGCGTCAATTAGAA GATGATGAGCTTATGTATCTTAGAGCCAGCTTTCAAAGGGTTTGTGGCTCGTCTGATTGTGAATCTTTTCATCTGATTCA TCCTGAGGGAGATATTGATCAGGAGCTTAGTATTTTCTTTTTTAGATCAAGGTGAATGTGATGAATATGACCTTTTGTTT CTTCCTCCACATCCTTTACCTTTTTGAGCCATGCTTAATTACCATGGTCAACATGTCGACCAGAGTATCATGGCTTTACC CATTTTAACTCTTTTTACTTTTTAGAGTCTACATCCACCAACGTCACTTTTTTTTTTTTTTTTATCTATCTTCGTTTCAT ATTACATCTATTATGTATATCTCTCATTTTATCTGATTTTAGG

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0393800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCACTGGAGTAACAACAGTGGACTGCCACAAACAAGTTCGATCATGGAGGCTGCTACGTTCTCTCATGCAACTTCT AATCCCCACTTGCAACTGTGCCACCATCATCAAAGACGACCACGATTATGCAATATCAGAAAAATACCTCCATAACTCCA ACAAGCACTCTTCATCATCACTCACCACCTCCACCACCATCACCGGCACAATATTCGGATACCGCAGAGGAAAAATCAAC TTCTGCATCCAAGAAAACGCCAACTCCACCACCAACCCAATTCTCCTCCTAGAACTCGCAGTTCCAACAAGCACTTTGGC CAAGGAAATGAGAGGAGGAACACTCAGAATCACGTTAGAGAGCAGCAATACTGATGAAAGAAATTACCCTGCAAAATCAC TTTTGTCCACTCCTCTATGGACCATGTACTGCAATGGAAGAAAAGTGGGTTATGCGGTTAAGCGCAGGCCTTCGAAAACC GATATTGAAGCGCTGAGGTTGATGCGTTCGGTGGTTGTGGGAACTGGCGTGCGTCAATTAGAAGATGATGAGCTTATGTA TCTTAGAGCCAGCTTTCAAAGGGTTTGTGGCTCGTCTGATTGTGAATCTTTTCATCTGATTCATCCTGAGGGAGATATTG ATCAGGAGCTTAGTATTTTCTTTTTTAGATCAAGGTGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0393800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATGVTTVDCHKQVRSWRLLRSLMQLLIPTCNCATIIKDDHDYAISEKYLHNSNKHSSSSLTTSTTITGTIFGYRRGKIN FCIQENANSTTNPILLLELAVPTSTLAKEMRGGTLRITLESSNTDERNYPAKSLLSTPLWTMYCNGRKVGYAVKRRPSKT DIEALRLMRSVVVGTGVRQLEDDELMYLRASFQRVCGSSDCESFHLIHPEGDIDQELSIFFFRSR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31276:SF4 View details on PTHR31276:SF4 Search for proteins/transripts with this domain View external data on PTHR31276:SF4	1	224	224	6.3E-118	–
PANTHER	PTHR31276 View details on PTHR31276 Search for proteins/transripts with this domain View external data on PTHR31276	1	224	224	6.3E-118	–
Pfam	PF04759 View details on PF04759 Search for proteins/transripts with this domain View external data on PF04759	67	223	157	4.5E-60	IPR006460 Show description in modal box View details on IPR006460 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR01570 View details on TIGR01570 Search for proteins/transripts with this domain View external data on TIGR01570	67	224	158	3.4E-59	IPR006460 Show description in modal box View details on IPR006460 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0010274 View details of GO:0010274 AmiGO InterPro QuickGO	Biological process	Hydrotropism	Growth or movement in a sessile organism toward or away from water, as of the roots of a plant.	Subterm of View details of GO:0009606

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0393800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…