Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0395600 |
| Transcript ID | LotjaGi4g1v0395600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyadenylate-binding protein family protein; TAIR: AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LX90|PABN3_ARATH Polyadenylate-binding protein 3; TrEMBL-Plants: tr|B7FID7|B7FID7_MEDTR Polyadenylate-binding protein II; Found in the gene: LotjaGi4g1v0395600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77370064..77374631) extracted from Lotus japonicus Gifu genome v1.2.
CACAATTTTTTCAAGTGGGTCAACATACAAATATCATTTCAAAAAGAACATACAAATATAAAATGTGTCATTGAGCACAA AGAGATTTGGGCCATTCGATCCACCAAATAGTTGCAGTTTCGTAACCCACATAAATTAGAAGAAGGAGGTAACCTAATCT GCATTACAATTCACAATTCGCACTTGTAATTTACAGAGAGGAGGAAAGGTCTTGTTGAGCAGAATCAGAAGAATATGGAC GAGGAAGAGCACGAGGTGTACGGAGGAGAAATCCCCGACGTCGGAGAAATGGAAGCAGACGTCGACATGTCCGCCGCCGA CGATGACGCCGCCGCCGTCAAGGAGCTCGACGAAATGAAGCGCCGCTTGAAGGAAATGGAAGAAGAAGCCGCCGCTCTTC GTGAGATGCAAGCTAAAGTCGAGAAGGAGATTGGCACCGTTCAAGGTTTGCATAATCCTCTAATCATCAATTCAATTATC ATCCATGTTCAAATGTTTATGAGTTTGCTGGAATTCTACGTTGTTATTGTCTTTGACTTTCTCAACGTTTTGGCCACACT TGAGAGCACGCTTATCATCATCACGAGCTACCTTGTTTTTTTCTGCAAAGTCTTTTACGTTTCTGTTGTTTCATATAAGC TTAGCTAAAAGTCAAATTCTCAATTAAGCTCAACTTTAATGGTTATTGGAAAAATCTAAATCAATGAGAGCTTAGGTAAC AACTAACAACCTTGCCTCGAATTGCTTGTTGGCGTTTTCATCGAAATCAACAAATCAAAGTTTTCTGAGACCCTTGGGCA TGTATGATGTTTCTAGGACCAAGCCAGGTTATTTGAGCCGGAGACACCCACATCTAGGTGGGGCTAGCTCTCGGAGTGTG GATTTTTTTCATCCATGAGACTCAAACCCGGCATCATCGTAATCACCATTATTATTGATAATAACTTGTTCATTGAATAT CTTTTGCAGATCCGGCTGCTGCAGCTGCTTCACAAGCAAACAAGGAGGAGACAGATGGTCGGTCCGTTTTTGTTGGCAAT GTATGAAAGCCTATTTCTCCCCCTCTCTATCTCCTTTATGTGGATGTGCCATTGTAATTGGTGTTATTTAGAGTTGAACT AGAAGGGGAACAGAATGAATGTGTTCTGTGCTTATGAAATTTAAAAAGATATCACAGAAAGGAATAAAAAGTGAAAAAAG ATTGAGGAGAAAAACTCGTATGTTTCTGAAAAGAAAAGAAAAAAGAAATGGAAAAAAAAGTCAAAAACATTTACAGAAGG AAAAAATAGAATGAAGTTGAGAGAAAATTGAAAAATATGAAAAAAAGAAAAGGGAAAAATAAGAACATGTTGGGGGAATA TGTGTATGGCATCTCATGGGAGTGGCAGGAAGTGGTACACCTGGAGTTAGAATGTGTTAAAGATGCTTCAACTTCACCAC CGGAGGAGACAGCTTGTGGTTCTTTTGGAATAACATTCTGTAAGTGTTGGGCATGCAATCTTAGTCATATAGCCCTTTTG TTGATTGCAATGAGGTCTGAGGTGCGTCTGATGTGTGTCATTTGACCAACATGCCAAAGGGTATGCAGGTGCTGCTTCCC TATGGTCTTAATTGTTGATCTCATAACTGTTCTCTTCTCTATGAATTAAACTACCCAATATCTTTTGGTTCAGGGTTTTG ATTTCTTATTCCAAGTCATTTCACTGAACATGAAGTTGCAAGTGAATGATTATATACATTCTTTTTTTCTTTTCCCCCCT CTGCTATCACTTCTTACAAAATTCTGATACTGCAAGTTTTACTAAAACAGTTTGAATTTGGACACATTTATTCATGTTCC ACTTATTCATTATCTGTTGGTGATGCATTAGATTAATAAATTTCATAGGATATAGGTATTGCAATCTTGCTCATTCTTGG GGAAACTTGTAGACCGGATAAGGTTGGCCATGTTTTAAATTGCTTTCAGGAGGAAACCAATTTGTAGAATGTGTGAGAAT GTTTCTGTAGTTTGAGCAAAAGCCTGTAATATGACTATAATCTATTATCATTAAGTCTTTGCTAAGTTAACTTTTCAAGG AGTGTGTAGCTTAGTTTGGTTTTGTGTTTGGGATGTCATATGATGATTGCCTTTTGTGGTTTACGAAGTCAGAATTCCTC TGACGTGCAAGGAGTTTGAAAAATGCAGATTCATGTTGTGATTTAGAGAGGAGAATGGTTATGTTGTGAATTGTGGTACA TTCAGAGGTCTATCTCTTTTTGGCTCCTTTCTTTAGGGATAAAAGTATAATTTGATTTTAAAATTGAGGGATACACCCTG GAGTTTTATGAGAGTTGAGTAATTTATGCAATTCCCCGTGAAATATATCGTAAATATGTTAGTAATAAGCTTCTATATTT GGGGTAAGATGGTAGCATAATATAAACCGGGACAAGAGTCCTGAATATATTTATGTGATCTATAAGGTGTAATTATGAAT TCTAGTTTTTTTTCATTATAACTGGATTAAATGTGAGCACCCCTGAATTAACTTCATATGTTGCTCACTATTGGTGTCAA AATCCTTTGAAATTGATTTGTCTTTTACAGGTTGATTATGCATGCACACCTGAAGAAGTGCAGCAACACTTTCAATCATG TGGTACAGTTAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTGGAAG CTGAAGCTGTTCAAGAGGCTCTCCGGTTGAATGAATCTGAACTGCATGGCCGTCAACTGAAGGTATGTTATTTCAATTGC TACTGTTCGCGTAATTCATACAACCCTTGGGTTCAAAAGAGCCATGAAATCATTATACTAAAATAGTAGTTTTTAATGAT ATTGATTAATTTATGATTCCAGGTTCTGCCTAAGAGGACCAATGTTCCTGGAATGAAGCAATATCGTCCTAGGCGCTATG ATCCTTACATGGCATATGGTTTCAGGAGGCCATATGCTCCTTCTCCATACTTCTACTCCCCTTATGGGTATGCTGCATGC CGCTTTTGTTTAATTCACGTATGTTATGCCTAGCTGTTTTATTGATGTTTTGTGGTTTCTTTTCGTTTTCTGTTGAACTA ATTGCAGGAAGGTTCCTAGGTTTAGAAGGCCAGCGCGTTACATGCCTTACTACTAGAAGTTCTTATGGAATGGTGTTGAA GATTTGGTGATGGGTGCATCCTGGAGTAAATAACTTATTCTGGCGAGCTTTTAGTGATGCTAATCTTCATCTCAATTATG TACTCTGTGACTAAGAATATATTTTTTTGTCCATTTTTCTTACTTAGATCTTGGGAGATAGTCATTATGTGACTGTATTG TTGCAAGGTCAGTCTTTATACTTTACATTACAGTGACAAAAGAATATAAACTGCATTAAACTTGTCTGGTCTCTTTCCCT GTTTAGAGCCACCAACACATGATGATTAATGTCTGGTGTTTAGATACATAATCGCCTTAGAAATGCTTATGCCTTAGCTT TCTCCCTTAAGATAGGGACTAGGCTAGGAGGAGTCTCCCTTAGAAATGCTTATACTTTAGCTTTCTCCCTCCCTTTCTTC CTCTGCTTAATGCTTATTAACCAACTCTTGGATCTTAAAGTTCAAGTCCCCTATGGGAGATAATTACAACATGATAATGT TTGCGATGACCTGAGAGTTCATTTCTATGACCTTTGGCAAGTATTAGGATCAAGCCAACCGAAGGATGATAAAACTTAAA TATAATATTGGGATAAAACCCTCTTATATAAAAGCACATGAGGGTTTAATACAGACACACACTTTCGTTTTGGGAGAGGG GAGGGGGGAGGTTGTTACAGTGGTTTGTCAGAAACAATGATGGGGAGAAAGGGTGGTGGGTGGGAGGAGGAGGAAGAAGG GAGGAAAGGGAAATAACCCTCCTCTTATTTTGTTTAGGAGAGTGTTTAAAACATTTATTTTTAGGGTTAGGGCTCGTTTG GCACGCCGTATTAGGCATGATAGTATAAGCTTATACAATACATTATGAGTTTATCCATTGTTTGGTGATGACATTGTATT GTATAAGCTTATCCATCAAAGTCCCCTTATACGTTAAAATGGCGTATTATTTAATCCATCATGTGAGTGATGGATAAGAC ATGATAAGGTTGTGACGTATAAGTCACCATCACTACCACCCTCCATTGCTGCCAACTTACACCACCATTGGCACCACCAC CGGGTGTTGCCGCCACCACCCGATAACCACCGCCGCCCAACCGTCACCACCACCACCACCGCCCTACCGCCACCACAACC ACCACCATATCGCCACCACCACCATAATCGCCACCACCACCCTATTGCCGCCACCAACACCACAACCACCACCCTATCGC CACCACTATCACCATTGCCTCCACCCTCCACCGTTGCCGCCACGCTACTGCAGCCGCCACCGCCACCCTATCGTCGCCAA CACCACAACCACCATCGCTGCCACCACCTCCGCCGCCACCACCGGTGTTACCGCCACCACCACCGACACCACAACCACCA CCCTATCG
CDS sequence (LotjaGi4g1v0395600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGAGGAAGAGCACGAGGTGTACGGAGGAGAAATCCCCGACGTCGGAGAAATGGAAGCAGACGTCGACATGTCCGC CGCCGACGATGACGCCGCCGCCGTCAAGGAGCTCGACGAAATGAAGCGCCGCTTGAAGGAAATGGAAGAAGAAGCCGCCG CTCTTCGTGAGATGCAAGCTAAAGTCGAGAAGGAGATTGGCACCGTTCAAGATCCGGCTGCTGCAGCTGCTTCACAAGCA AACAAGGAGGAGACAGATGGTCGGTCCGTTTTTGTTGGCAATGTTGATTATGCATGCACACCTGAAGAAGTGCAGCAACA CTTTCAATCATGTGGTACAGTTAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGG AATTTGTGGAAGCTGAAGCTGTTCAAGAGGCTCTCCGGTTGAATGAATCTGAACTGCATGGCCGTCAACTGAAGGTTCTG CCTAAGAGGACCAATGTTCCTGGAATGAAGCAATATCGTCCTAGGCGCTATGATCCTTACATGGCATATGGTTTCAGGAG GCCATATGCTCCTTCTCCATACTTCTACTCCCCTTATGGGAAGGTTCCTAGGTTTAGAAGGCCAGCGCGTTACATGCCTT ACTACTAG
Protein sequence (LotjaGi4g1v0395600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEEEHEVYGGEIPDVGEMEADVDMSAADDDAAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGTVQDPAAAAASQA NKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQEALRLNESELHGRQLKVL PKRTNVPGMKQYRPRRYDPYMAYGFRRPYAPSPYFYSPYGKVPRFRRPARYMPYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 210 | 210 | 3.6E-125 | – | |
| PANTHER | 1 | 210 | 210 | 3.6E-125 | – | |
| Gene3D | 14 | 171 | 158 | 1.1E-27 | ||
| Coils | 31 | 65 | 35 | - | – | |
| SUPERFAMILY | 78 | 183 | 106 | 1.16E-26 | ||
| ProSiteProfiles | 88 | 164 | 77 | 17.08 | ||
| CDD | 89 | 160 | 72 | 5.18534E-48 | – | |
| SMART | 89 | 160 | 72 | 3.1E-21 | ||
| Pfam | 90 | 158 | 69 | 1.3E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0395600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…